Basfia succiniciproducens (DSM 22022, CCUG 57335, JF4016)

Name: Basfia succiniciproducens (DSM 22022, CCUG 57335, JF4016)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11757

Type strain

Strain Designation JF4016

Culture col. no. DSM 22022 CCUG 57335 JF4016

NCBI tax ID(s) 653940

Special Collections DSMZ CCUG Literature strains

History DSMZ <- P. Kuhnert, Univ. Bern, Switzerland; JF4016

Links

Basfia succiniciproducens JF4016 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from rumen of a Simmental cow.

Gram-negative ovoid-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402638

DSM 22022,CCUG 57335

@ref 20215

Last LPSN update 2026-05-29 08:27:38

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Basfia

Species Basfia succiniciproducens

Full scientific name Basfia succiniciproducens Kuhnert et al. 2010

BacDive ID	Other strains from **Basfia succiniciproducens** (5)	Type strain
155436	B. succiniciproducens CCUG 57762
155437	B. succiniciproducens CCUG 57763
155438	B. succiniciproducens CCUG 57764
155439	B. succiniciproducens CCUG 57765
155440	B. succiniciproducens CCUG 57766

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Confidence
29375	negative	0.3 µm	ovoid-shaped
125438				93.542
125438	negative			98.5

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
16038	alpha	1	1-2 days
61289			1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16038	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16038	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16038	positive	growth	37
29375	positive	growth	37
61289	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16038	aerobe
29375	facultative anaerobe
61289	microaerophile
125439	obligate aerobe	97.532

Spore formation

@ref	Spore formation	Confidence
125439		95.863
125438		91.441

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
29375	23652 ChEBI	dextrin	+	carbon source
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
29375	28757 ChEBI	fructose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
29375	17306 ChEBI	maltose	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
16038	catalase	-	1.11.1.6
29375	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
16038	cytochrome-c oxidase	+	1.9.3.1
68369	gelatinase	-		from API 20NE
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
16038	+	-	+	-	-	-	-	+	+	+	+	+	+	+	+	-	-	+	-	-	-
16038	+	-	+	-	-	-	-	+	+/-	+	+/-	+/-	+	+	+	-	-	+/-	-	-	not determinedn.d.
16038	+	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
16038	+	+	+	+	-	-	+	+	+	-	+	-	-
16038	+	+	-	+	-	-	-	-	-	-	-	-	-
16038	-	+	+	-	+	-	-	-	-	-	-	-	-
16038	-	+	+	+	+	-	-	+	+	+	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16038	rumen of a Simmental cow		Bern	Switzerland	CHE	Europe
61289	Rumen of a Simmental cow	2007-05-01	Bern	Switzerland	CHE	Europe

Taxonmaps

69479

Global distribution of 16S sequence FJ463881 (>99% sequence identity) for Basfia from Microbeatlas

Aquatic Samples	273
Soil Samples	129
Animal Samples	6032
Plant Samples	32
Total Samples	6466

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16038	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1145587v1 assembly for Basfia succiniciproducens JF4016	complete	GCA_011455875	653940.7	8048270178	653940	99.29
66792	IMG-taxon 2593339214 annotated assembly for Basfia succiniciproducens DSM 22022	scaffold	GCA_900101275	653940.3	2593339214	653940	72.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16038	Basfia succiniciproducens strain JF4016 16S ribosomal RNA gene, partial sequence	FJ463881	1365		653940

GC content

16038

GC-content (mol%)42.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1145587v1 assembly for Basfia succiniciproducens JF4016
NCBI: GCA_011455875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.53	no
125439	gram_stain	BacteriaNetⓘ	negative	70.45	no
125439	spore_formation	BacteriaNetⓘ	no	95.86	no
125439	motility	BacteriaNetⓘ	no	68.79	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Basfia succiniciproducens JF4016
NCBI: GCA_011455875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	92.77	no
125438	aerobic	aerobicⓘ	no	74.05	no
125438	spore-forming	spore-formingⓘ	no	91.44	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	93.54	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Organic Acid Production by Basfia succiniciproducens from Agro-Industrial By-Products.	Balazs M, Peter I, Bartos H, Bodor Z, Antal E, Albert C, Miklossy I.	BioTech (Basel)	10.3390/biotech14030068	2025
	Substrate type and CO₂ addition significantly influence succinic acid production of Basfia succiniciproducens.	Balazs M, Bartos H, Lanyi S, Bodor Z, Miklossy I.	Biotechnol Lett	10.1007/s10529-023-03406-7	2023
	Bioprocess optimization for lactic and succinic acid production from a pulp and paper industry side stream.	Olszewska-Widdrat A, Xiros C, Wallenius A, Schneider R, Rios da Costa Pereira LP, Venus J.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1176043	2023
	Evaluation of organic fractions of municipal solid waste as renewable feedstock for succinic acid production.	Stylianou E, Pateraki C, Ladakis D, Cruz-Fernandez M, Latorre-Sanchez M, Coll C, Koutinas A.	Biotechnol Biofuels	10.1186/s13068-020-01708-w	2020
	Technologies for Biogas Upgrading to Biomethane: A Review.	Adnan AI, Ong MY, Nomanbhay S, Chew KW, Show PL.	Bioengineering (Basel)	10.3390/bioengineering6040092	2019
	Valorisation of xylose to renewable fuels and chemicals, an essential step in augmenting the commercial viability of lignocellulosic biorefineries.	Narisetty V, Cox R, Bommareddy R, Agrawal D, Ahmad E, Pant KK, Chandel AK, Bhatia SK, Kumar D, Binod P, Gupta VK, Kumar V.	Sustain Energy Fuels	10.1039/d1se00927c	2021
Phylogeny	Basfia succiniciproducens gen. nov., sp. nov., a new member of the family Pasteurellaceae isolated from bovine rumen.	Kuhnert P, Scholten E, Haefner S, Mayor D, Frey J	Int J Syst Evol Microbiol	10.1099/ijs.0.011809-0	2009

References

#16038	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22022
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25783	IJSEM 44 2010 ( DOI 10.1099/ijs.0.011809-0 , PubMed 19648315 )
#29375	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25783
#61289	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57335
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68377	Automatically annotated from API NH .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Basfia succiniciproducens (DSM 22022, CCUG 57335, JF4016)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_011455875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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