Bibersteinia trehalosi (DSM 23101, ATCC 29703, CCUG 27190)

Name: Bibersteinia trehalosi (DSM 23101, ATCC 29703, CCUG 27190)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11747

Type strain

Strain Designation A92, S110, serovar 3/T15, CNP 908

Culture col. no. DSM 23101 ATCC 29703 CCUG 27190 CIP 103829 NCTC 10370 6 more

NCBI tax ID(s) 47735

Special Collections DSMZ CCUG CIP

Links

Bibersteinia trehalosi A92 is a microaerophile, mesophilic animal pathogen that was isolated from ovine septicaemia.

microaerophile mesophilic animal pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 44847

DSM 23101,ATCC 29703,NCTC 10370,CCUG 27190,CIP 103829,CCM 4733,BCRC 13947,CCRC 13947

@ref 20215

Last LPSN update 2025-12-16 09:49:40

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Bibersteinia

Species Bibersteinia trehalosi

Full scientific name Bibersteinia trehalosi (Sneath and Stevens 1990) Blackall et al. 2007

Synonyms (1)

Pasteurella trehalosi

BacDive ID	Other strains from **Bibersteinia trehalosi** (13)	Type strain
136443	B. trehalosi CIP 105784, CCM 5422
138112	B. trehalosi CIP 104864, NCTC 11549, CIP 103288
138113	B. trehalosi CIP 104865, NCTC 11550
138114	B. trehalosi CIP 104866, NCTC 11551
138115	B. trehalosi CIP 104867, ATCC 29705, NCTC 10626
138116	B. trehalosi CIP 104868, NCTC 10627
138117	B. trehalosi CIP 104869, NCTC 10628
138118	B. trehalosi CIP 104870, NCTC 10629
139231	B. trehalosi CIP 103427, ATCC 29704, NCTC 10369
142404	B. trehalosi CCUG 12393
148624	B. trehalosi CCUG 35739
149426	B. trehalosi CCUG 37711
152349	B. trehalosi CCUG 46489

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.9
125438	negative	97.5

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16699	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16699	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40804	MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola		Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
123577	CIP Medium 118-b	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16699	positive	growth	37	mesophilic
40804	positive	growth	37	mesophilic
48678	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
16699	microaerophile
48678	microaerophile
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		97

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	+	3.4.11.5	from API NH
68377	tryptophan deaminase	-	4.1.99.1	from API NH

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
16699	+/-	+	-	+	-	-	+/-	+	-	+	+	-	-
16699	-	+/-	+	-	+	-	-	+/-	+	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease
#Host	#Mammals

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
16699	ovine septicaemia	United Kingdom	GBR	Europe
48678	Lamb,septicaemia
123577	Animal, Lamb, septicemia

Taxonmaps

69479

Global distribution of 16S sequence AY362927 (>99% sequence identity) for Bibersteinia trehalosi subclade from Microbeatlas

Aquatic Samples	177
Soil Samples	67
Animal Samples	5902
Plant Samples	29
Total Samples	6175

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
16699		2	Risk group (German classification) According to TRBA 466
123577		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM434620v1 assembly for Bibersteinia trehalosi DSM 23101	scaffold	GCA_004346205	47735.17	2784746803	47735	73.75

Genome browser: GCA_004346205

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16699	Bibersteinia trehalosi strain NCTC 10370 16S ribosomal RNA gene, partial sequence	AY362927	1362		47735

GC content

16699

GC-content (mol%)42.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bibersteinia trehalosi DSM 23101
NCBI: GCA_004346205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	yes	56.40	no
125439	gram_stain	BacteriaNetⓘ	negative	97.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bibersteinia trehalosi DSM 23101
NCBI: GCA_004346205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	95.01	no
125438	aerobic	aerobicⓘ	no	74.73	yes
125438	spore-forming	spore-formingⓘ	no	89.17	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Title	Authors	Journal	DOI	Year
Comprehensive serotyping of Mannheimia haemolytica by a PCR system using the diversity of capsule biosynthesis genes.	Iguchi A, Ueno Y, Hoshinoo K, Okuno M, Uemura R, You G, Ogura Y, Takamatsu D.	Sci Rep	10.1038/s41598-025-97176-z	2025
Development and validation of a real-time PCR specific for the leukotoxin gene of Bibersteinia trehalosi.	Killion HJ, Edwards W, Jennings-Gaines J, Wood M, Fox K, Sondgeroth K.	J Vet Diagn Invest	10.1177/1040638717753497	2018
Development of a multiplex real-time PCR assay using two thermocycling platforms for detection of major bacterial pathogens associated with bovine respiratory disease complex from clinical samples.	Loy JD, Leger L, Workman AM, Clawson ML, Bulut E, Wang B.	J Vet Diagn Invest	10.1177/1040638718800170	2018
A Sensitive and Accurate Recombinase Polymerase Amplification Assay for Detection of the Primary Bacterial Pathogens Causing Bovine Respiratory Disease.	Conrad CC, Daher RK, Stanford K, Amoako KK, Boissinot M, Bergeron MG, Alexander T, Cook S, Ralston B, Zaheer R, Niu YD, McAllister T.	Front Vet Sci	10.3389/fvets.2020.00208	2020
Assessing shared respiratory pathogens between domestic (Ovis aries) and bighorn (Ovis canadensis) sheep; methods for multiplex PCR, amplicon sequencing, and bioinformatics to characterize respiratory flora.	Fox KA, MacGlover CAW, Blecha KA, Stenglein MD.	PLoS One	10.1371/journal.pone.0293062	2023
Reclassification of [Pasteurella] trehalosi as Bibersteinia trehalosi gen. nov., comb. nov.	Blackall PJ, Bojesen AM, Christensen H, Bisgaard M	Int J Syst Evol Microbiol	10.1099/ijs.0.64521-0	2007

References

#16699	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23101
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40804	; Curators of the CIP;
#48678	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27190
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123577	Collection of Institut Pasteur ; Curators of the CIP; CIP 103829
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bibersteinia trehalosi (DSM 23101, ATCC 29703, CCUG 27190)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004346205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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