Pasteurella dagmatis (DSM 22969, ATCC 43325, CCUG 12397)

Name: Pasteurella dagmatis (DSM 22969, ATCC 43325, CCUG 12397)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11735

Type strain

Strain Designation SDH 953/60, 953/60

Culture col. no. DSM 22969 ATCC 43325 CCUG 12397 CIP 103293 NCTC 11617 2 more

NCBI tax ID(s) 667128 754

Special Collections DSMZ CCUG CIP

History DSMZ <- CCUG <- W. Frederiksen, Statens Serum Inst., Copenhagen, Denmark <- S. D. Hendriksen; SDH 953/60 CIP <- 1989, NCTC <- R. Mutters, Phillipps Univ., Marburg, Germany <- W. Frederiksen, Stat. Ser., Copenhagen, Denmark <- S.D. Henriksen, Oslo, Norway : strain 953/60

Links

Pasteurella dagmatis SDH 953/60 is a bacterium that was isolated from human respiratory tract.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 41774

ATCC 43325,NCTC 11617,CCUG 12397,CIP 103293,DSM 22969

@ref 20215

Last LPSN update 2026-05-29 08:27:38

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Pasteurella

Species Pasteurella dagmatis

Full scientific name Pasteurella dagmatis Mutters et al. 1985

BacDive ID	Other strains from **Pasteurella dagmatis** (34)	Type strain
134942	P. dagmatis 16-87, CIP 102773, ATCC 51570
137580	P. dagmatis 18.87, CIP 102774
141334	P. dagmatis CCUG 997
141651	P. dagmatis CCUG 4405
141770	P. dagmatis CCUG 6577 A
141783	P. dagmatis CCUG 6724
142445	P. dagmatis CCUG 12532
143034	P. dagmatis CCUG 16438
143124	P. dagmatis CCUG 17293
143603	P. dagmatis CCUG 20556
143657	P. dagmatis CCUG 20848
143680	P. dagmatis CCUG 20945
144253	P. dagmatis CCUG 23965
144641	P. dagmatis CCUG 26021
144858	P. dagmatis CCUG 26854
144893	P. dagmatis CCUG 26991, MCCM 00702
146103	P. dagmatis CCUG 30384
146271	P. dagmatis CCUG 30764
146648	P. dagmatis CCUG 31721
146973	P. dagmatis CCUG 32578
147022	P. dagmatis CCUG 32658
147373	P. dagmatis CCUG 33474
147407	P. dagmatis CCUG 33540
147915	P. dagmatis CCUG 34486
148035	P. dagmatis CCUG 34715
148468	P. dagmatis CCUG 35497
148469	P. dagmatis CCUG 35498
150605	P. dagmatis CCUG 41728
150621	P. dagmatis CCUG 41782
150940	P. dagmatis CCUG 42805
152042	P. dagmatis CCUG 45626 B
153708	P. dagmatis CCUG 50710
156067	P. dagmatis CCUG 60255
172662	P. dagmatis CIMB 04-9582, CRBIP17.127

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		92.363
125438		97.769	negative

Colony morphology

@ref	Type of hemolysis	Hemolysis ability
16565	alpha	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16565	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40589	MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola		Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
118850	CIP Medium 118-b	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16565	positive	growth	37
40589	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.681
125438		90.93

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68374	29016 ChEBI	arginine	-	hydrolysis	from API ID32E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68374	17634 ChEBI	D-glucose	-	builds acid from	from API ID32E
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68374	16899 ChEBI	D-mannitol	-	builds acid from	from API ID32E
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68377	17306 ChEBI	maltose	+	builds acid from	from API NH
68374	17306 ChEBI	maltose	-	builds acid from	from API ID32E
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68374	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68374	27082 ChEBI	trehalose	-	builds acid from	from API ID32E
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68374	27897 ChEBI	tryptophan	+	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68381	16199 ChEBI	urea	+	hydrolysis	from API rID32STR
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
68381	15688 ChEBI	acetoin	from API rID32STR
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68381	15688 ChEBI	acetoin	-		from API rID32STR
68368	15688 ChEBI	acetoin	+		from API 20E
68374	35581 ChEBI	indole		+	from API ID32E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68374	arginine dihydrolase	-	3.5.3.6	from API ID32E
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68374	beta-galactosidase	-	3.2.1.23	from API ID32E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68382	beta-glucosidase	-	3.2.1.21	from API zym
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
16565	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
16565	cytochrome-c oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68368	gelatinase	-		from API 20E
68381	glycyl tryptophan arylamidase	-		from API rID32STR
68374	L-aspartate arylamidase	+	3.4.11.21	from API ID32E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68374	lipase	-		from API ID32E
68382	lipase (C 14)	-		from API zym
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68377	proline-arylamidase	-	3.4.11.5	from API NH
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68382	trypsin	-	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68381	urease	+	3.5.1.5	from API rID32STR
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
45689	-	-	-	-	-	-	+	-	+	+	-	+	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
45689	-	+	-	-	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
45689	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
45689	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
45689	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
16565	+	+	+	+	-	+	-	+	-	-	-	+	-
16565	-	+	+	+	+	-	+	-	+	-	-	-	+

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
16565	-	-	-	-	-	+	+	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+
45689	-	-	-	-	-	+	+	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Airways

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
16565	human respiratory tract	Homo sapiens	Norway	NOR	Europe
45689	Human respiratory tract	Homo sapiens
118850	Human, Nose	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence AY362920 (>99% sequence identity) for Pasteurella dagmatis subclade from Microbeatlas

Aquatic Samples	26
Soil Samples	4
Animal Samples	1939
Plant Samples	6
Total Samples	1975

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16565	2	Risk group (German classification) According to TRBA 466
118850	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	49950_F01 assembly for Pasteurella dagmatis NCTC11617	complete	GCA_900186835	754.3	2773857813	754	99.15
66792	ASM16347v1 assembly for Pasteurella dagmatis ATCC 43325	scaffold	GCA_000163475	667128.3	647000288	667128	73.47

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Pasteurella dagmatis ATCC 43325 16S ribosomal RNA gene, partial sequence	M75051	1486		667128
16565	Pasteurella dagmatis ATCC 43325 strain CCUG 12397 16S ribosomal RNA gene, partial sequence	AY362920	1364		667128

GC content

16565

GC-content (mol%)40.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 49950_F01 assembly for Pasteurella dagmatis NCTC11617
BV-BRC: 754.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	61.88	no
125439	gram_stain	BacteriaNetⓘ	negative	70.40	no
125439	motility	BacteriaNetⓘ	no	81.57	no
125439	spore_formation	BacteriaNetⓘ	no	99.68	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pasteurella dagmatis NCTC11617
NCBI: GCA_900186835.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.77	no
125438	anaerobic	anaerobicⓘ	no	91.45	no
125438	aerobic	aerobicⓘ	no	82.96	no
125438	spore-forming	spore-formingⓘ	no	90.93	no
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	no	92.36	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacteremia due to Pasteurella dagmatis acquired from a dog bite, with a review of systemic infections and challenges in laboratory identification.	Xiong J, Krajden S, Kus JV, Rawte P, Blondal J, Downing M, Zurawska U, Chapman W.	Can J Infect Dis Med Microbiol	10.1155/2015/946812	2015
Enzymology	Rapid and accurate identification of human isolates of Pasteurella and related species by sequencing the sodA gene.	Gautier AL, Dubois D, Escande F, Avril JL, Trieu-Cuot P, Gaillot O.	J Clin Microbiol	10.1128/jcm.43.5.2307-2314.2005	2005
Pathogenicity	Linezolid activity compared to those of selected macrolides and other agents against aerobic and anaerobic pathogens isolated from soft tissue bite infections in humans.	Goldstein EJ, Citron DM, Merriam CV.	Antimicrob Agents Chemother	10.1128/aac.43.6.1469	1999
Pathogenicity	Comparative in vitro activities of DU-6859a, levofloxacin, ofloxacin, sparfloxacin, and ciprofloxacin against 387 aerobic and anaerobic bite wound isolates.	Goldstein EJ, Citron DM, Hunt Gerardo S, Hudspeth M, Merriam CV.	Antimicrob Agents Chemother	10.1128/aac.41.5.1193	1997
Pathogenicity	Activity of gatifloxacin compared to those of five other quinolones versus aerobic and anaerobic isolates from skin and soft tissue samples of human and animal bite wound infections.	Goldstein EJ, Citron DM, Merriam CV, Tyrrell K, Warren Y.	Antimicrob Agents Chemother	10.1128/aac.43.6.1475	1999
Phylogeny	The aquatic budding bacterium Blastobacter denitrificans is a nitrogen-fixing symbiont of Aeschynomene indica.	van Berkum P, Eardly BD.	Appl Environ Microbiol	10.1128/aem.68.3.1132-1136.2002	2002
Pathogenicity	Comparative in vitro activities of azithromycin, Bay y 3118, levofloxacin, sparfloxacin, and 11 other oral antimicrobial agents against 194 aerobic and anaerobic bite wound isolates.	Goldstein EJ, Nesbit CA, Citron DM.	Antimicrob Agents Chemother	10.1128/aac.39.5.1097	1995
Pathogenicity	In vitro activity of Bay 12-8039, a new 8-methoxyquinolone, compared to the activities of 11 other oral antimicrobial agents against 390 aerobic and anaerobic bacteria isolated from human and animal bite wound skin and soft tissue infections in humans.	Goldstein EJ, Citron DM, Hudspeth M, Hunt Gerardo S, Merriam CV.	Antimicrob Agents Chemother	10.1128/aac.41.7.1552	1997
Pathogenicity	Activities of HMR 3004 (RU 64004) and HMR 3647 (RU 66647) compared to those of erythromycin, azithromycin, clarithromycin, roxithromycin, and eight other antimicrobial agents against unusual aerobic and anaerobic human and animal bite pathogens isolated from skin and soft tissue infections in humans.	Goldstein EJ, Citron DM, Hunt Gerardo S, Hudspeth M, Merriam CV.	Antimicrob Agents Chemother	10.1128/aac.42.5.1127	1998
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Genetics	Pasteurella multocida genome assembly of Indonesian local isolates using long-read Oxford Nanopore Technology sequencing.	Prihandani SS, Wayan Teguh Wibawan I, Noor SM, Safika S, Khairullah AR, Susanti S, Wahyuwardani S, Andriani A, Sumarningsih S, Kurnianto H, Ariyanti T, Adinata Y, Nuradji H, Puarada ARR.	Open Vet J	10.5455/ovj.2025.v15.i6.46	2025
Enzymology	Development of PCR assays for species- and type-specific identification of Pasteurella multocida isolates.	Townsend KM, Frost AJ, Lee CW, Papadimitriou JM, Dawkins HJ.	J Clin Microbiol	10.1128/jcm.36.4.1096-1100.1998	1998
	Frischella japonica sp. nov., an anaerobic member of the Orbales in the Gammaproteobacteria, isolated from the gut of the eastern honey bee, Apis cerana japonica Fabricius.	Wolter LA, Suenami S, Miyazaki R.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004712	2019

References

#16565	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22969
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40589	; Curators of the CIP;
#45689	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12397
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68374	Automatically annotated from API ID32E .
#68377	Automatically annotated from API NH .
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118850	Collection of Institut Pasteur ; Curators of the CIP; CIP 103293
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pasteurella dagmatis (DSM 22969, ATCC 43325, CCUG 12397)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

API 50CHac

API ID32E

API NH

API rID32STR

Isolation, sampling and environmental information

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Sequence information

Genome sequences

Genome browser: GCA_900186835

16S sequences

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