Avibacterium avium (DSM 18557, ATCC 29546, CCM 3836)

Name: Avibacterium avium (DSM 18557, ATCC 29546, CCM 3836)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11695

Type strain

Culture col. no. DSM 18557 ATCC 29546 CCM 3836 CCUG 12833 CIP 100919 1 more

NCBI tax ID(s) 751

Special Collections DSMZ CCUG CIP

Links

Avibacterium avium DSM 18557 is a mesophilic, Gram-negative, rod-shaped animal pathogen that was isolated from infraorbital sinus of chicken.

Gram-negative rod-shaped mesophilic animal pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 39584

ATCC 29546,CCUG 12833,CIP 100919,CCM 3836,NCTC 11297,DSM 18557

@ref 20215

Last LPSN update 2025-12-16 09:49:39

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Avibacterium

Species Avibacterium avium

Full scientific name Avibacterium avium (Hinz and Kunjara 1977) Blackall et al. 2005

Synonyms (2)

Haemophilus avium
Pasteurella avium

BacDive ID	Other strains from **Avibacterium avium** (3)	Type strain
144753	A. avium CCUG 26457
144754	A. avium CCUG 26458
148835	A. avium CCUG 36062, MCCM 03023

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116666	negative	rod-shaped
125438			94.409
125438	negative		97.5

Colony morphology

@ref	Type of hemolysis	Incubation period
7589	gamma	1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7589	HAEMOPHILUS MEDIUM (DSMZ Medium 804)	Medium recipe at MediaDive	Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
36476	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
116666	CIP Medium 463	Medium recipe at CIP
116666	CIP Medium 6	Medium recipe at CIP
116666	CIP Medium 118-b	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7589	positive	growth	37	mesophilic
36476	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.1

Spore formation

@ref	Spore formation	Confidence
125439		98.9
125438		93.247

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
116666	17632 ChEBI	nitrate	+	reduction
116666	16301 ChEBI	nitrite	-	reduction
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH
116666	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116666	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
7589	catalase	+	1.11.1.6
116666	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
7589	cytochrome-c oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116666	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116666	ornithine decarboxylase	-	4.1.1.17
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
116666	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
116666	urease	-	3.5.1.5
68377	urease	-	3.5.1.5	from API NH
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116666	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
7589	+	+	-	+	-	-	-	+	-	-	+	-	-
7589	+	+/-	-	+	-	-	-	+	-	-	+	-	-
7589	-	+	+/-	-	+	-	-	-	+	-	-	+	-
7589	-	+	+	-	+	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken
#Host Body-Site	#Oral cavity and airways	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7589	infraorbital sinus of chicken	USA	USA	North America
45835	Chick,infraorbital sinus	USA	USA	North America
116666	Animal, Chick, infraorbital sinus	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence M75058 (>99% sequence identity) for Avibacterium avium from Microbeatlas

Aquatic Samples
Soil Samples	4
Animal Samples	76
Plant Samples
Total Samples	80

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
7589		2	Risk group (German classification) According to TRBA 466
116666		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	46338_B01 assembly for Avibacterium avium NCTC 11297	contig	GCA_900454535	751.5	2894400626	751	78.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Avibacterium avium strain CCUG 12833 16S ribosomal RNA gene, partial sequence	AY362916	1363		751
7589	Avibacterium avium strain NCTC 11297 16S ribosomal RNA gene, partial sequence	M75058	1478		751

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Avibacterium avium NCTC 11297
NCBI: GCA_900454535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	no	73.70	no
125439	gram_stain	BacteriaNetⓘ	negative	80.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Avibacterium avium strain NCTC 11297 strain NCTC11297
PATRIC: 751.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	93.74	no
125438	aerobic	aerobicⓘ	no	84.08	no
125438	spore-forming	spore-formingⓘ	no	93.25	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	94.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	A Highly Sensitive and Specific Probe-Based Real-Time PCR for the Detection of Avibacterium paragallinarum in Clinical Samples From Poultry.	Kuchipudi SV, Yon M, Surendran Nair M, Byukusenge M, Barry RM, Nissly RH, Williams J, Pierre T, Mathews T, Walner-Pendleton E, Dunn P, Barnhart D, Loughrey S, Davison S, Kelly DJ, Tewari D, Jayarao BM.	Front Vet Sci	10.3389/fvets.2021.609126	2021
Biotechnology	Soleris®Enterobacteriaceae for the Detection of Enterobacteriaceae in Select Foods: AOAC Performance Tested MethodSM 121901.	Alles S, Roman B, Betts G, Jordan S, Everis L, Montei C, Biswas P, Mozola M, Donofrio R.	J AOAC Int	10.1093/jaoacint/qsaa001	2020
Phylogeny	Reclassification of Pasteurella gallinarum, [Haemophilus] paragallinarum, Pasteurella avium and Pasteurella volantium as Avibacterium gallinarum gen. nov., comb. nov., Avibacterium paragallinarum comb. nov., Avibacterium avium comb. nov. and Avibacterium volantium comb. nov.	Blackall PJ, Christensen H, Beckenham T, Blackall LL, Bisgaard M	Int J Syst Evol Microbiol	10.1099/ijs.0.63357-0	2005

References

#7589	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18557
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36476	; Curators of the CIP;
#45835	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12833
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116666	Collection of Institut Pasteur ; Curators of the CIP; CIP 100919
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Avibacterium avium (DSM 18557, ATCC 29546, CCM 3836)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900454535

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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