Avibacterium paragallinarum DSM 18554 is a microaerophile, Gram-negative, rod-shaped animal pathogen that was isolated from infraorbital sinus of a chicken.
Gram-negative rod-shaped microaerophile animal pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pasteurellales |
| Family Pasteurellaceae |
| Genus Avibacterium |
| Species Avibacterium paragallinarum |
| Full scientific name Avibacterium paragallinarum (Biberstein and White 1969) Blackall et al. 2005 |
| Synonyms (1) |
| BacDive ID | Other strains from Avibacterium paragallinarum (6) | Type strain |
|---|---|---|
| 148833 | A. paragallinarum CCUG 36041, MCCM 01288 | |
| 148834 | A. paragallinarum CCUG 36042, MCCM 01270 | |
| 153746 | A. paragallinarum CCUG 50852, MCCM 01290 | |
| 153747 | A. paragallinarum CCUG 50854, MCCM 01271 | |
| 153748 | A. paragallinarum CCUG 50855, MCCM 01272 | |
| 153749 | A. paragallinarum CCUG 50856, MCCM 01303 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7586 | CHOCOLATE AGAR (DSMZ Medium 429b) | Medium recipe at MediaDive | Name: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base | ||
| 34281 | MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml) | |||
| 121558 | CIP Medium 10 | Medium recipe at CIP | |||
| 7586 | HAEMOPHILUS MEDIUM (DSMZ Medium 804) | Medium recipe at MediaDive | Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68377 | 17634 ChEBI | D-glucose | + | builds acid from | from API NH |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 121558 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 121558 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 121558 | 17632 ChEBI | nitrate | - | reduction | |
| 121558 | 16301 ChEBI | nitrite | - | reduction | |
| 68377 | 18257 ChEBI | ornithine | - | degradation | from API NH |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68377 | 27897 ChEBI | tryptophan | - | energy source | from API NH |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68377 | 16199 ChEBI | urea | - | hydrolysis | from API NH |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 121558 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 121558 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 121558 | beta-galactosidase | + | 3.2.1.23 | |
| 68377 | beta-galactosidase | - | 3.2.1.23 | from API NH |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 7586 | catalase | - | 1.11.1.6 | |
| 121558 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 7586 | cytochrome-c oxidase | + | 1.9.3.1 | |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 121558 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 68377 | gamma-glutamyltransferase | - | 2.3.2.2 | from API NH |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 121558 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 121558 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68377 | ornithine decarboxylase | - | 4.1.1.17 | from API NH |
| 121558 | oxidase | + | ||
| 68377 | proline-arylamidase | - | 3.4.11.5 | from API NH |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68377 | tryptophan deaminase | - | 4.1.99.1 | from API NH |
| 121558 | urease | - | 3.5.1.5 | |
| 68377 | urease | - | 3.5.1.5 | from API NH |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | ubiquinone biosynthesis | 100 | 7 of 7 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | tetrahydrofolate metabolism | 100 | 14 of 14 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | palmitate biosynthesis | 95.45 | 21 of 22 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | photosynthesis | 85.71 | 12 of 14 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | ||
| 66794 | degradation of sugar alcohols | 81.25 | 13 of 16 | ||
| 66794 | myo-inositol biosynthesis | 80 | 8 of 10 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | valine metabolism | 77.78 | 7 of 9 | ||
| 66794 | lipid A biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | citric acid cycle | 71.43 | 10 of 14 | ||
| 66794 | Entner Doudoroff pathway | 70 | 7 of 10 | ||
| 66794 | phenylalanine metabolism | 69.23 | 9 of 13 | ||
| 66794 | purine metabolism | 69.15 | 65 of 94 | ||
| 66794 | serine metabolism | 66.67 | 6 of 9 | ||
| 66794 | flavin biosynthesis | 66.67 | 10 of 15 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | ||
| 66794 | aspartate and asparagine metabolism | 66.67 | 6 of 9 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | glutamate and glutamine metabolism | 64.29 | 18 of 28 | ||
| 66794 | proline metabolism | 63.64 | 7 of 11 | ||
| 66794 | methionine metabolism | 61.54 | 16 of 26 | ||
| 66794 | pyrimidine metabolism | 60 | 27 of 45 | ||
| 66794 | glycogen metabolism | 60 | 3 of 5 | ||
| 66794 | glycolysis | 58.82 | 10 of 17 | ||
| 66794 | heme metabolism | 57.14 | 8 of 14 | ||
| 66794 | CO2 fixation in Crenarchaeota | 55.56 | 5 of 9 | ||
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | ||
| 66794 | alanine metabolism | 55.17 | 16 of 29 | ||
| 66794 | isoprenoid biosynthesis | 53.85 | 14 of 26 | ||
| 66794 | urea cycle | 53.85 | 7 of 13 | ||
| 66794 | leucine metabolism | 53.85 | 7 of 13 | ||
| 66794 | oxidative phosphorylation | 52.75 | 48 of 91 | ||
| 66794 | tryptophan metabolism | 52.63 | 20 of 38 | ||
| 66794 | sulfopterin metabolism | 50 | 2 of 4 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | cis-vaccenate biosynthesis | 50 | 1 of 2 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | degradation of hexoses | 50 | 9 of 18 | ||
| 66794 | starch degradation | 50 | 5 of 10 | ||
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | ||
| 66794 | NAD metabolism | 50 | 9 of 18 | ||
| 66794 | butanoate fermentation | 50 | 2 of 4 | ||
| 66794 | glutathione metabolism | 50 | 7 of 14 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | degradation of pentoses | 50 | 14 of 28 | ||
| 66794 | tyrosine metabolism | 50 | 7 of 14 | ||
| 66794 | non-pathway related | 50 | 19 of 38 | ||
| 66794 | histidine metabolism | 48.28 | 14 of 29 | ||
| 66794 | lysine metabolism | 47.62 | 20 of 42 | ||
| 66794 | cysteine metabolism | 44.44 | 8 of 18 | ||
| 66794 | degradation of sugar acids | 44 | 11 of 25 | ||
| 66794 | propanol degradation | 42.86 | 3 of 7 | ||
| 66794 | lipid metabolism | 41.94 | 13 of 31 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | arginine metabolism | 41.67 | 10 of 24 | ||
| 66794 | propionate fermentation | 40 | 4 of 10 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 40 | 2 of 5 | ||
| 66794 | metabolism of disaccharids | 36.36 | 4 of 11 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | ascorbate metabolism | 31.82 | 7 of 22 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 30.77 | 4 of 13 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | 3-phenylpropionate degradation | 26.67 | 4 of 15 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | dTDPLrhamnose biosynthesis | 25 | 2 of 8 | ||
| 66794 | phenol degradation | 25 | 5 of 20 | ||
| 66794 | sulfate reduction | 23.08 | 3 of 13 |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121558 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Global distribution of 16S sequence AY498868 (>99% sequence identity) for Avibacterium paragallinarum from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 54424_E01 assembly for Avibacterium paragallinarum NCTC11296 | contig | 728 | 78.15 | ||||
| 66792 | ASM292115v1 assembly for Avibacterium paragallinarum CCUG 12835 | contig | 728 | 9.99 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 7586 | Haemophilus paragallinarum strain NCTC 11296T 16S ribosomal RNA gene, partial sequence | AY498868 | 1463 | 728 | ||
| 124043 | Avibacterium paragallinarum strain NCTC 11296 16S ribosomal RNA gene, partial sequence. | M75057 | 1483 | 728 | ||
| 124043 | Avibacterium paragallinarum strain CCM6075 16S ribosomal RNA gene, partial sequence. | OR764865 | 1382 | 728 | ||
| 124043 | Avibacterium paragallinarum strain ATCC 29545 16S ribosomal RNA gene, partial sequence. | PQ774927 | 1431 | 728 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 79.05 | no |
| 125439 | motility | BacteriaNetⓘ | no | 83.49 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 80.80 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.23 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.62 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 92.55 | no |
| 125438 | aerobic | aerobicⓘ | no | 79.83 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 97.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 93.31 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Research Note: Isolation and genomic characterization of Avibacterium paragallinarum from the Hubei Province, China. | Guo Y, Yin M, Zhang T, Zhang W, Lu Q, Hu Q, Zhai X, Luo Q. | Poult Sci | 10.1016/j.psj.2025.105514 | 2025 | |
| Epidemiological Investigation of Infectious Coryza in Central China and the Effect of Enterococcus faecium on Improving Vaccine Immunity. | Cui W, Wang C, Wu Y, Wang T, Wang Z, Zhang W, Hu T, Zhang W, Hu S, Zhou H, Li Z, Zhou Z. | Poult Sci | 10.1016/j.psj.2025.105622 | 2025 | ||
| Phylogeny | Development of selective culture media for efficient isolation of Avibacterium paragallinarum from chickens. | Srednik ME, Shelkamy MMS, Hashish A, R De Macedo N, Sato Y, El-Gazzar MM, Sahin O, Zhang Q. | J Clin Microbiol | 10.1128/jcm.00311-25 | 2025 | |
| Development and Validation of PCR Diagnostic Assays for Detection of Avibacterium paragallinarum and Ornithobacterium rhinotracheale. | Krylova E, Bogomazova A, Kirsanova N, Putintseva A, Gorbacheva N, Prasolova O, Soltynskaya I, Ivanova O. | Vet Sci | 10.3390/vetsci11010007 | 2023 | ||
| Novel NAD-independent Avibacterium paragallinarum: Isolation, characterization and molecular identification in Iran. | Beiranvand S, Piri-Gharaghie T, Dehganzad B, Khedmati F, Jalali F, AsadAlizadeh M, Momtaz H. | Vet Med Sci | 10.1002/vms3.754 | 2022 | ||
| A Highly Sensitive and Specific Probe-Based Real-Time PCR for the Detection of Avibacterium paragallinarum in Clinical Samples From Poultry. | Kuchipudi SV, Yon M, Surendran Nair M, Byukusenge M, Barry RM, Nissly RH, Williams J, Pierre T, Mathews T, Walner-Pendleton E, Dunn P, Barnhart D, Loughrey S, Davison S, Kelly DJ, Tewari D, Jayarao BM. | Front Vet Sci | 10.3389/fvets.2021.609126 | 2021 | ||
| Genetics | Genetic diversity of Avibacterium paragallinarum: uncovering novel genotypes in Iranian poultry farms. | Bashashati M, Moradi Haghgou L, Nouri A, Hassanzadeh M, Abdoshah M, Sabouri F. | Avian Pathol | 10.1080/03079457.2025.2584352 | 2025 | |
| Draft genome sequence of the HP60 serovar of Avibacterium paragallinarum. | Coertzen A, Erasmus M, McCarlie SJ, Bragg RR. | Microbiol Resour Announc | 10.1128/mra.00146-25 | 2025 | ||
| Efficacy of Different Vaccination Plans Against Experimental Infection with a Serovar B Variant of Avibacterium paragallinarum from Argentina in Laying Hens. | Huberman YD, Mendez LL, Mendez AM, Lomonaco JC, Gulle AH, Gulle CH, De-Soler-Pinart M, Baratelli M, Criado JL, Dardi M, Ponti M. | Avian Dis | 10.1637/aviandiseases-d-25-00017 | 2025 | ||
| Genetics | Genotypic and Biochemical Divergence of Avibacterium paragallinarum Isolates in China. | Chen L, Hu J, Dai N, Du P, Tian Y, Zhang Q, Yang C, Fu B, Feng S, Liao M. | Avian Dis | 10.1637/aviandiseases-d-24-00042 | 2025 | |
| Exploring the indoor airborne microbiome and resistome in layer barns across Alberta, Canada. | Ghaffar A, Liljebjelke K, Checkley SL, Farooq M, Abdul-Careem MF. | Res Vet Sci | 10.1016/j.rvsc.2025.105930 | 2025 | ||
| Genetics | Avibacterium paragallinarum, the Causative Agent of Infectious Coryza: A Comprehensive Review. | El-Gazzar M, Gallardo R, Bragg R, Hashish A, Sun HL, Davison S, Feberwee A, Huberman Y, Skein T, Coertzen A, Kelly D, Soriano-Vargas E, Morales-Erasto V, Silva AD, Guo MJ, Ladman B, Dijkman R, Ghanem M. | Avian Dis | 10.1637/aviandiseases-d-24-00105 | 2025 | |
| Eight complete and four draft genome sequences of nonpathogenic Avibacterium paragallinarum isolates from naive, healthy layer chickens in the USA. | Shelkamy MMS, Hashish A, Srednik ME, Gadu E, Chaves M, Macedo N, Zhang Q, Sato Y, Schmitz-Esser S, El-Gazzar M. | Microbiol Resour Announc | 10.1128/mra.01334-24 | 2025 | ||
| Development and Validation of PCR Assays for Improved Diagnosis of Infectious Coryza by Differentiating Pathogenic and Nonpathogenic Avibacterium paragallinarum. | Shelkamy MMS, Hashish A, Chaves M, Srednik ME, Macedo NR, Gadu E, Sato Y, Schmitz-Esser S, Zhang Q, El-Gazzar M. | Avian Dis | 10.1637/aviandiseases-d-24-00041 | 2025 | ||
| A Retrospective Analysis to Identify Epidemiologic Patterns of the Infectious Coryza Outbreak in California 2016-22. | Nguyen V, Stoute S, Ramsubeik S, Miller I, Jerry C, Corsiglia C, Gallardo RA. | Avian Dis | 10.1637/aviandiseases-d-24-00022 | 2025 | ||
| Identifcation of the genes involved in biofilm formation of Avibacterium paragallinarum using random transposon mutagenesis. | Guo M, Wang H, Zhang H, Bo Z, Zhang C, Zhang X, Wu Y. | Vet Microbiol | 10.1016/j.vetmic.2025.110410 | 2025 | ||
| Identification and characterization of biosynthetic loci of lipooligosaccharide and capsular polysaccharide in Avibacterium paragallinarum. | Chen L, Sun J, Hu J, Tian Y, Du P, Guo Q, Yang C, Zhang Q, Feng S, Liao M. | Vet Microbiol | 10.1016/j.vetmic.2024.110317 | 2024 | ||
| The quadruplex fluorescent quantitative PCR method for the simultaneous detection of respiratory diseases in quail: Pasteurella multocida, Avibacterium paragallinarum, Mycoplasma gallisepticum, and Mycoplasma synoviae. | Wang H, Xue L, Wang L, Liu Y, Chen J, Sun Y, An T, Li C, Chen H, Yu C, Xia C, Zhang H. | Front Microbiol | 10.3389/fmicb.2025.1605356 | 2025 | ||
| Isolation, molecular detection, and sequence analysis of Avibacterium paragallinarum from suspected cases of infectious coryza infected chickens from different areas of Ethiopia, 2022-2024. | Deresse G, Assefa E, Tesfaw L, Dufera D, Adamu K, Akalu M, Bayissa B, Abayneh T, Zewdie G, Abebe A, Jemal M, Megra A, Legesse A, Birhanu K, Gelaye E. | BMC Microbiol | 10.1186/s12866-025-03862-3 | 2025 | ||
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| Phylogeny | A detailed analysis of 16S rRNA gene sequencing and conventional PCR-based testing for the diagnosis of bacterial pathogens and discovery of novel bacteria. | Li MN, Wang T, Wang N, Han Q, You XM, Zhang S, Zhang CC, Shi YQ, Qiao PZ, Man CL, Feng T, Li YY, Zhu Z, Quan KJ, Xu TL, Zhang GF. | Antonie Van Leeuwenhoek | 10.1007/s10482-024-01999-1 | 2024 | |
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| New molecular diagnostic targets for Avibacterium paragallinarum and a set of single-plex and multiplex qPCR methods for the rapid differential diagnosis of Mycoplasma gallisepticum, Mycoplasma synoviae, and Avibacterium paragallinarum. | Xu B, Wang S, Yao W, Ni B, Yuan T, Liu B, Yuan L, Wei Y, Ma S, Lyu L, Wang X, Ouyang W, Zhang Z, Feng Z. | Poult Sci | 10.1016/j.psj.2025.105665 | 2025 | ||
| Prevalence of Nonpathogenic Avibacterium paragallinarum in Naïve-Healthy Layer Flocks Across Multiple States in the United States. | Shelkamy MMS, Hashish A, Srednik ME, Chaves M, Macedo NR, Gadu E, Schmitz-Esser S, Zhang Q, Wang C, Sato Y, El-Gazzar M. | Transbound Emerg Dis | 10.1155/tbed/9994679 | 2025 | ||
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| Case reports involving coinfection with Avibacterium paragallinarum and Ornithobacterium rhinotracheale in broiler chickens and Avibacterium endocarditis in broiler breeding hens in Poland. | Stepien-Pysniak D, Dec M, Hauschild T, Kursa O, Marek A, Wilczynski J, Brzeski M. | Avian Pathol | 10.1080/03079457.2024.2323029 | 2024 | ||
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| Molecular characterization of the HMTp210 gene of Avibacterium paragallinarum and the proposition of a new genotyping method as alternative for classical serotyping. | Buter R, Feberwee A, de Wit S, Heuvelink A, da Silva A, Gallardo R, Soriano Vargas E, Swanepoel S, Jung A, Todte M, Dijkman R. | Avian Pathol | 10.1080/03079457.2023.2239178 | 2023 | ||
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| Standardization and validation of a novel reverse transcriptase polymerase chain reaction method for detecting virulent strains of the infectious bursal disease virus. | Longa-Bobadilla V, Ormeno-Vasquez P, Criollo-Orozco M, Tataje-Lavanda L, Huaman-Gutierrez K, Montalvan A, Zimic M, Fernandez-Sanchez M, Fernandez-Diaz M. | Vet World | 10.14202/vetworld.2024.2998-3004 | 2024 | ||
| Molecular detection and pyrG sequence analysis of Avibacterium paragallinarum using clinical samples of infraorbital exudates from layer chickens with infectious coryza symptoms in Indonesia. | Putra FN, Wahyuni AETH, Sutrisno B. | Vet World | 10.14202/vetworld.2023.1655-1660 | 2023 | ||
| Establishment of a Multilocus Sequence Typing Scheme for the Characterization of Avibacterium paragallinarum. | Guo M, Jin Y, Wang H, Zhang X, Wu Y. | Vet Sci | 10.3390/vetsci11050208 | 2024 | ||
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| Relationship Between the Serotypes and Hemagglutinin Gene Sequences of Avibacterium paragallinarum. | Tan DH, Gong YS, Ou SC, Yang CY, Pan YC, Shien JH, Chang PC. | Avian Dis | 10.1637/aviandiseases-d-21-00017 | 2021 | ||
| Questionnaire study suggests grave consequences of infectious laryngotracheitis, infectious coryza and mycoplasmosis in small chicken flocks. | Etterlin PE, Comin A, Eriksson H, Bagge E, Jinnerot T, Jonare L, Jansson DS. | Acta Vet Scand | 10.1186/s13028-023-00703-z | 2023 | ||
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| HutZ is required for efficient heme utilization and contributes to the pathogenicity of Avibacterium paragallinarum. | Huo C, Jiao L, Li G, Li D, Lin W, Sun Y, Sun H. | Microbiol Spectr | 10.1128/spectrum.03979-22 | 2023 | ||
| Phylogeny | Identification, HPG2 Sequence Analysis, and Antimicrobial Susceptibility of Avibacterium paragallinarum Isolates Obtained from Outbreaks of Infectious Coryza in Commercial Layers in Sonora State, Mexico. | Luna-Castrejon LP, Buter R, Pantoja-Nunez GI, Acuna-Yanes M, Ceballos-Valenzuela K, Talavera-Rojas M, Salgado-Miranda C, Heuvelink A, de Wit S, Soriano-Vargas E, Feberwee A. | Avian Dis | 10.1637/aviandiseases-d-20-00103 | 2021 | |
| Development of a one-run real-time PCR detection system for pathogens associated with poultry infectious diseases. | Shibanuma T, Nunomura Y, Oba M, Kawahara F, Mizutani T, Takemae H. | J Vet Med Sci | 10.1292/jvms.22-0482 | 2023 | ||
| Commensal bacteria contribute to the growth of multidrug-resistant Avibacterium paragallinarum in chickens. | Zhu J, Chen Y, Wu Y, Wang Y, Zhu K. | Front Microbiol | 10.3389/fmicb.2022.1010584 | 2022 | ||
| The Protective Efficacy of an Inactivated Vaccine against Avibacterium paragallinarum Field Isolates. | Guo M, Liu D, Xu H, Zhang H, Jin Y, Tan H, Wu Y, Zhang X. | Vet Sci | 10.3390/vetsci9090458 | 2022 | ||
| In silico analysis to develop PCR assays for identification of bacterial pathogens in animals: what can we improve? | Bogomazova A, Krylova E, Soltynskaya I, Prasolova O, Ivanova O. | Front Vet Sci | 10.3389/fvets.2023.1235837 | 2023 | ||
| Sodium toxicosis in chickens: case series (2014-2023) and literature review. | Gornatti-Churria CD, Poppenga R, Jerry CF, Stoute ST. | J Vet Diagn Invest | 10.1177/10406387241300476 | 2025 | ||
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| Serotypes and Hemagglutinin Gene Sequences of Avibacterium paragallinarum Isolated in Taiwan. | Tan DH, Ou SC, Shien JH, Huang SW, Hsieh MK, Chang PC. | Avian Dis | 10.1637/0005-2086-64.2.197 | 2020 | ||
| Infectious coryza in a grey crowned crane (Balearica regulorum) recovered from captivity. | Nsengimana O, Habarugira G, Ojok L, Ruhagazi D, Kayitare A, Shyaka A. | Vet Med Sci | 10.1002/vms3.766 | 2022 | ||
| Pathogenicity of Avibacterium paragallinarum Strains from Peru and the Selection of Candidate Strains for an Inactivated Vaccine. | Caballero-Garcia M, Mendoza-Espinoza A, Ascanio S, Chero P, Rojas R, Huberman YD. | Vaccines (Basel) | 10.3390/vaccines10071043 | 2022 | ||
| The combination of inactivated and subunit vaccines enhances protective efficacy against Mycoplasma synoviae. | Yi C, Xu Q, Han Y, Deng M, Li G, Li C, Sun X, Zhong M, Jin M, Kang C. | Poult Sci | 10.1016/j.psj.2025.105248 | 2025 | ||
| Antimicrobial sensitivity of Avibacterium paragallinarum isolates from layers in the special region of Yogyakarta, Indonesia. | Fauziah I, Asmara W, Wahyuni AETH. | Vet World | 10.14202/vetworld.2021.1124-1127 | 2021 | ||
| Characterization of a highly virulent Avibacterium paragallinarum isolate. | Mei C, Zhi Y, Xu J, Liang Z, Zhang X, Hu G, Wang H. | J Anim Sci | 10.1093/jas/skad365 | 2023 | ||
| A newly developed temperature-sensitive Mycoplasma synoviae live attenuated strain prevents pathological lesions of the respiratory and reproductive tracts in chickens caused by a wild-type M. synoviae strain. | Liu CC, Suzuki C, Sato K, Otomo H, Shimoji Y, Oishi E. | J Vet Med Sci | 10.1292/jvms.25-0021 | 2025 | ||
| Complete Genome Sequences of Seven Avibacterium paragallinarum Isolates from Poultry Farms in Pennsylvania, USA. | Byukusenge M, Nissly RH, Li L, Pierre T, Mathews T, Wallner-Pendleton E, Dunn P, Barnhart D, Loughrey S, Davison S, Kelly DJ, Tewari D, Jayarao BM, Kuchipudi SV. | Microbiol Resour Announc | 10.1128/mra.00654-20 | 2020 | ||
| Enzymology | An Uncommon Case of Trueperella pyogenes Infection in an Adult Backyard Rooster and a Retrospective Study; 2000-20. | da Silva AP, Shivaprasad HL, Jerry C, Stoute S. | Avian Dis | 10.1637/aviandiseases-d-20-00125 | 2021 | |
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| Surveillance on respiratory diseases reveals enzootic circulation of both H5 and H9 avian influenza viruses in small-scale commercial layer farms of Bangladesh. | Rahman MM, Nooruzzaman M, Kabiraj CK, Mumu TT, Das PM, Chowdhury EH, Islam MR. | Zoonoses Public Health | 10.1111/zph.12879 | 2021 | ||
| Phylogeny | Genotypic divergence of Avibacterium paragallinarum isolates with different growth requirements for nicotinamide adenine dinucleotide. | Jeong OM, Kang MS, Blackall PJ, Jeon BW, Kim JH, Jeong J, Lee HJ, Kim DW, Kwon YK, Kim JH. | Avian Pathol | 10.1080/03079457.2019.1692128 | 2020 | |
| Genomic Islands in the Full-Genome Sequence of an NAD-Hemin-Independent Avibacterium paragallinarum Strain Isolated from Peru. | Tataje-Lavanda L, Montalvan A, Montesinos R, Morales-Erasto V, Zimic-Peralta M, Fernandez-Sanchez M, Fernandez-Diaz M. | Microbiol Resour Announc | 10.1128/mra.00118-19 | 2019 | ||
| Characterization of an Outbreak of Infectious Coryza (Avibacterium paragallinarum) in Commercial Chickens in Central California. | Crispo M, Blackall P, Khan A, Shivaprasad HL, Clothier K, Senties-Cue CG, Cooper G, Blakey J, Pitesky M, Mountainspring G, Cutler G, Bickford A, Stoute S. | Avian Dis | 10.1637/19-00081.1 | 2019 | ||
| Identification and characterization of Dutch Avibacterium paragallinarum isolates and the implications for diagnostics. | Feberwee A, Dijkman R, Buter R, Soriano-Vargas E, Morales-Erasto V, Heuvelink A, Fabri T, Bouwstra R, de Wit S. | Avian Pathol | 10.1080/03079457.2019.1641178 | 2019 | ||
| Phylogeny | Mycoplasma gallisepticum and Mycoplasma synoviae in Turkeys in Poland. | Kursa O, Tomczyk G, Sieczkowska A, Kostka S, Sawicka-Durkalec A. | Pathogens | 10.3390/pathogens13010078 | 2024 | |
| Phylogeny | Isolation, Identification and Antimicrobial Susceptibility of AvibacteriumParagallinarum from Backyard Chicken in Retail Markets of Karaj and Tehran Cities, Iran. | Nouri A, Bashashati M, Mirzaie SG, Shoshtari A, Banani M. | Arch Razi Inst | 10.22092/ari.2020.343173.1502 | 2021 | |
| A Novel Lateral Flow Assay for Rapid and Sensitive Nucleic Acid Detection of Avibacterium paragallinarum. | Huo C, Li D, Hu Z, Li G, Hu Y, Sun H. | Front Vet Sci | 10.3389/fvets.2021.738558 | 2021 | ||
| Genetics | Comparative Genomics Analysis and Outer Membrane Vesicle-Mediated Horizontal Antibiotic-Resistance Gene Transfer in Avibacterium paragallinarum. | Xu J, Mei C, Zhi Y, Liang ZX, Zhang X, Wang HJ. | Microbiol Spectr | 10.1128/spectrum.01379-22 | 2022 | |
| Distinct Effects of Lactiplantibacillus plantarum HNU082 on Microbial Single-Nucleotide Variants in Large Intestine and Small Intestine. | Ma W, Han Z, Liu X, Cui W, Zhen D, Zhou X, Song Y, Jiang S. | Microorganisms | 10.3390/microorganisms13040731 | 2025 | ||
| Exploring the Impact of Land Cover on the Occurrence of Ornithobacteriosis and Fowl Cholera: A Case-Case Study. | Ouyang L, Campler MR, Wong S, Xiao N, Arruda AG. | Animals (Basel) | 10.3390/ani15030396 | 2025 | ||
| Early migration pattern of Avibacterium paragallinarum in the nasal passage of experimentally infected chicken and Japanese quail by immunohistochemistry. | Balouria A, Deshmukh S, Banga HS, Ahmad A, Brar RS, Sodhi S. | Avian Pathol | 10.1080/03079457.2018.1562153 | 2019 | ||
| Pathogenicity and innate response to Avibacterium paragallinarum in chickens. | Guo M, Liu D, Chen X, Wu Y, Zhang X. | Poult Sci | 10.1016/j.psj.2021.101523 | 2022 | ||
| Assessment of antigenic specificity of polyclonal antisera raised against Avibacterium paragallinarum by ELISA. | Ahmed A, Deshmukh S, Banga HS, Sodhi S, Brar RS. | Vet Anim Sci | 10.1016/j.vas.2020.100119 | 2020 | ||
| Development of a rapid quantitative method to differentiate MS1 vaccine strain from wild-type Mycoplasma synoviae. | Liao C, Chen Y, Yan Z, Song Y, Zhou Q, Zhu P, He X, Li W, Chen F. | Front Vet Sci | 10.3389/fvets.2024.1354548 | 2024 | ||
| The characterization of outer membrane vesicles (OMVs) and their role in mediating antibiotic-resistance gene transfer through natural transformation in Riemerella anatipestifer. | Wang M, Yao Y, Yang Y, Zhu D, Wang M, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Ou X, Tian B, Sun D, Zhang L, Yu Y, He Y, Wu Z, Cheng A, Liu M. | Poult Sci | 10.1016/j.psj.2024.104730 | 2025 | ||
| Metagenomic Characterization of Poultry Cloacal and Oropharyngeal Swabs in Kenya Reveals Bacterial Pathogens and Their Antimicrobial Resistance Genes. | Panyako PM, Ommeh SC, Kuria SN, Lichoti JK, Musina J, Nair V, Nene V, Munir M, Oyola SO. | Int J Microbiol | 10.1155/2024/8054338 | 2024 | ||
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| Metabolism | Identification and characterization of a chondroitin synthase from Avibacterium paragallinarum. | Wang TT, Zhu CY, Zheng S, Meng CC, Wang TT, Meng DH, Li YJ, Zhu HM, Wang FS, Sheng JZ. | Appl Microbiol Biotechnol | 10.1007/s00253-018-8926-4 | 2018 | |
| Genetics | Emergence of the zoonotic bacterium Necropsobacter rosorum in nutria Myocastor coypus with implications for wildlife and human health | Laidoudi Y, Davoust B, Lepidi H, Levasseur A. | Sci Rep | 2025 | ||
| Presence of Avibacterium paragallinarum and Histopathologic Lesions Corresponds with Clinical Signs in a Co-infection Model with Gallibacterium anatis. | Paudel S, Ruhnau D, Wernsdorf P, Liebhart D, Hess M, Hess C. | Avian Dis | 10.1637/11609-021317-regr | 2017 | ||
| Concurrent infection of Avibacterium paragallinarum and fowl adenovirus in layer chickens. | Mei C, Xian H, Blackall PJ, Hu W, Zhang X, Wang H. | Poult Sci | 10.1016/j.psj.2020.09.033 | 2020 | ||
| Coinfection of Avibacterium paragallinarum and Gallibacterium anatis in Specific-Pathogen-Free Chickens Complicates Clinical Signs of Infectious Coryza, Which Can Be Prevented by Vaccination. | Paudel S, Hess M, Hess C. | Avian Dis | 10.1637/11481-081016-reg | 2017 | ||
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| Efficacy of tetravalent coryza vaccine against the challenge of Avibacterium paragallinarum serovars A and B isolates from Indonesia in chickens. | Wahyuni AETH, Ramandani D, Prakasita VC, Widyarini S. | Vet World | 10.14202/vetworld.2019.972-977 | 2019 | ||
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| Virulence of Serovar C-1 Strains of Avibacterium paragallinarum. | Trujillo-Ruiz HH, Shivaprasad HL, Morales-Erasto V, Talavera-Rojas M, Salgado-Miranda C, Salazar-Garcia F, Blackall PJ, Soriano-Vargas E. | Avian Dis | 10.1637/11421-040716-resnote | 2016 | ||
| Cinnamon oil downregulates virulence genes of poultry respiratory bacterial agents and revealed significant bacterial inhibition: An in vitro perspective. | Erfan AM, Marouf S. | Vet World | 10.14202/vetworld.2019.1707-1715 | 2019 | ||
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| Development of an experimental model using cold stress to assess the pathogenicity of two Moroccan AI H9N2 isolates from 2016 and 2022 in commercial broiler chickens. | Arbani O, Ducatez MF, Kadja-Wonou M, Salamat F, Kichou F, El Houadfi M, Fellahi S. | PLoS One | 10.1371/journal.pone.0320666 | 2025 | ||
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| Phylogeny | Effect of Antibiotics on the Colonization of Live Attenuated Salmonella Enteritidis Vaccine in Chickens. | Hu J, Che C, Zuo J, Niu X, Wang Z, Lian L, Jia Y, Zhang H, Zhang T, Yu F, Nawaz S, Han X. | Front Vet Sci | 10.3389/fvets.2021.784160 | 2021 | |
| An updated comprehensive review on ornithobacteriosis: A worldwide emerging avian respiratory disease. | El-Ghany WAA. | Open Vet J | 10.5455/ovj.2021.v11.i4.5 | 2021 | ||
| p518, a small floR plasmid from a South American isolate of Actinobacillus pleuropneumoniae. | da Silva GC, Rossi CC, Santana MF, Langford PR, Bosse JT, Bazzolli DMS. | Vet Microbiol | 10.1016/j.vetmic.2017.04.019 | 2017 | ||
| Detection and antibiotic resistance of Mycoplasma gallisepticum and Mycoplasma synoviae among chicken flocks in Egypt. | Emam M, Hashem YM, El-Hariri M, El-Jakee J. | Vet World | 10.14202/vetworld.2020.1410-1416 | 2020 | ||
| Genetics | Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum. | Dahlhausen KE, Jospin G, Coil DA, Eisen JA, Wilkins LGE. | PeerJ | 10.7717/peerj.10177 | 2020 | |
| Identification, differentiation and antibiotic susceptibility of Gallibacterium isolates from diseased poultry. | El-Adawy H, Bocklisch H, Neubauer H, Hafez HM, Hotzel H. | Ir Vet J | 10.1186/s13620-018-0116-2 | 2018 | ||
| Genetics | Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples. | Van Borm S, Steensels M, Mathijs E, Vandenbussche F, van den Berg T, Lambrecht B. | Virus Genes | 10.1007/s11262-021-01872-7 | 2021 | |
| A putative siderophore receptor of Gallibacterium anatis 12656-12 under Fur control also binds hemoglobin. | Chantes-Guerra A, Maldonado-Puga S, Rojas-Ruiz N, Rea-Hernandez I, Montes-Garcia FJ, Trujillo-Ruiz H, Yanez-Aguilar IE, Vazquez-Cruz C, Sanchez-Alonso P, Negrete-Abascal E. | Front Microbiol | 10.3389/fmicb.2022.951173 | 2022 | ||
| Genetics | Mobile Genetic Elements Drive Antimicrobial Resistance Gene Spread in Pasteurellaceae Species. | da Silva GC, Goncalves OS, Rosa JN, Franca KC, Bosse JT, Santana MF, Langford PR, Bazzolli DMS. | Front Microbiol | 10.3389/fmicb.2021.773284 | 2021 | |
| Reducing Antimicrobial Usage in Small-Scale Chicken Farms in Vietnam: A 3-Year Intervention Study. | Phu DH, Cuong NV, Truong DB, Kiet BT, Hien VB, Thu HTV, Yen LK, Minh NTT, Padungtod P, Setyawan E, Thwaites G, Rushton J, Carrique-Mas J. | Front Vet Sci | 10.3389/fvets.2020.612993 | 2020 | ||
| Molecular Survey of Respiratory and Immunosuppressive Pathogens Associated with Low Pathogenic Avian Influenza H9N2 Subtype and Virulent Newcastle Disease Viruses in Commercial Chicken Flocks. | Gowthaman V, Singh SD, Dhama K, Srinivasan P, Saravanan S, Gopala Krishna Murthy TR, Ramakrishnan MA. | J Poult Sci | 10.2141/jpsa.0160032 | 2017 | ||
| Phylogeny | A Consistent and Predictable Commercial Broiler Chicken Bacterial Microbiota in Antibiotic-Free Production Displays Strong Correlations with Performance. | Johnson TJ, Youmans BP, Noll S, Cardona C, Evans NP, Karnezos TP, Ngunjiri JM, Abundo MC, Lee CW. | Appl Environ Microbiol | 10.1128/aem.00362-18 | 2018 | |
| Co-infection of Newcastle disease virus genotype XIII with low pathogenic avian influenza exacerbates clinical outcome of Newcastle disease in vaccinated layer poultry flocks. | Gowthaman V, Singh SD, Dhama K, Ramakrishnan MA, Malik YPS, Gopala Krishna Murthy TR, Chitra R, Munir M, Munir M. | Virusdisease | 10.1007/s13337-019-00533-6 | 2019 | ||
| Molecular detection and characterization of infectious laryngotracheitis virus (Gallid herpesvirus-1) from clinical samples of commercial poultry flocks in India. | Gowthaman V, Singh SD, Dhama K, Barathidasan R, Mathapati BS, Srinivasan P, Saravanan S, Ramakrishnan MA. | Virusdisease | 10.1007/s13337-014-0206-z | 2014 | ||
| Phylogeny | A Unique Capsule Locus in the Newly Designated Actinobacillus pleuropneumoniae Serovar 16 and Development of a Diagnostic PCR Assay. | Bosse JT, Li Y, Sarkozi R, Gottschalk M, Angen O, Nedbalcova K, Rycroft AN, Fodor L, Langford PR. | J Clin Microbiol | 10.1128/jcm.02166-16 | 2017 | |
| Antimicrobial Resistance in Bacterial Poultry Pathogens: A Review. | Nhung NT, Chansiripornchai N, Carrique-Mas JJ. | Front Vet Sci | 10.3389/fvets.2017.00126 | 2017 | ||
| Imaging of Escherichia coli K5 and glycosaminoglycan precursors via targeted metabolic labeling of capsular polysaccharides in bacteria. | Wang YJ, Li L, Yu J, Hu HY, Liu ZX, Jiang WJ, Xu W, Guo XP, Wang FS, Sheng JZ. | Sci Adv | 10.1126/sciadv.ade4770 | 2023 | ||
| Experimental co-infection of infectious bronchitis and low pathogenic avian influenza H9N2 viruses in commercial broiler chickens. | Hassan KE, Ali A, Shany SAS, El-Kady MF. | Res Vet Sci | 10.1016/j.rvsc.2017.06.024 | 2017 | ||
| Causes of mortality in backyard poultry in eight states in the United States. | Cadmus KJ, Mete A, Harris M, Anderson D, Davison S, Sato Y, Helm J, Boger L, Odani J, Ficken MD, Pabilonia KL. | J Vet Diagn Invest | 10.1177/1040638719848718 | 2019 | ||
| Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 13: Diaminopyrimidines: trimethoprim. | EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, De Cesare A, Herman L, Hilbert F, Lindqvist R, Nauta M, Ru G, Simmons M, Skandamis P, Suffredini E, Andersson DI, Bampidis V, Bengtsson-Palme J, Bouchard D, Ferran A, Kouba M, Lopez Puente S, Lopez-Alonso M, Nielsen SS, Pechova A, Petkova M, Girault S, Broglia A, Guerra B, Innocenti ML, Liebana E, Lopez-Galvez G, Manini P, Stella P, Peixe L. | EFSA J | 10.2903/j.efsa.2021.6865 | 2021 | ||
| Antimicrobial Usage and Antimicrobial Resistance in Animal Production in Southeast Asia: A Review. | Nhung NT, Cuong NV, Thwaites G, Carrique-Mas J. | Antibiotics (Basel) | 10.3390/antibiotics5040037 | 2016 | ||
| Pathogenicity | Effect of Cinnamomum verum leaf essential oil on virulence factors of Candida species and determination of the in-vivo toxicity with Galleria mellonella model. | Wijesinghe GK, Maia FC, de Oliveira TR, de Feiria SNB, Joia F, Barbosa JP, Boni GC, Sardi JCO, Rosalen PL, Hofling JF. | Mem Inst Oswaldo Cruz | 10.1590/0074-02760200349 | 2020 | |
| Ways to minimize bacterial infections, with special reference to Escherichia coli, to cope with the first-week mortality in chicks: an updated overview. | Swelum AA, Elbestawy AR, El-Saadony MT, Hussein EOS, Alhotan R, Suliman GM, Taha AE, Ba-Awadh H, El-Tarabily KA, Abd El-Hack ME. | Poult Sci | 10.1016/j.psj.2021.101039 | 2021 | ||
| Genetics | Metagenomics Reveals That Intravenous Injection of Beta-Hydroxybutyric Acid (BHBA) Disturbs the Nasopharynx Microflora and Increases the Risk of Respiratory Diseases. | Qi J, Cai D, Cui Y, Tan T, Zou H, Guo W, Xie Y, Guo H, Chen SY, Ma X, Gou L, Cui H, Geng Y, Zhang M, Ye G, Zhong Z, Ren Z, Hu Y, Wang Y, Deng J, Yu S, Cao S, Wanapat M, Fang J, Wang Z, Zuo Z. | Front Microbiol | 10.3389/fmicb.2020.630280 | 2020 | |
| Genetics | Chaperone-usher fimbriae in a diverse selection of Gallibacterium genomes. | Kudirkiene E, Bager RJ, Johnson TJ, Bojesen AM. | BMC Genomics | 10.1186/1471-2164-15-1093 | 2014 | |
| Metabolism | Outer membrane vesicles of Pasteurella multocida contain virulence factors. | Fernandez-Rojas MA, Vaca S, Reyes-Lopez M, de la Garza M, Aguilar-Romero F, Zenteno E, Soriano-Vargas E, Negrete-Abascal E. | Microbiologyopen | 10.1002/mbo3.201 | 2014 | |
| Radial extracorporeal shock wave treatment harms developing chicken embryos. | Kiessling MC, Milz S, Frank HG, Korbel R, Schmitz C. | Sci Rep | 10.1038/srep08281 | 2015 | ||
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| Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 11: Sulfonamides. | EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, De Cesare A, Herman L, Hilbert F, Lindqvist R, Nauta M, Ru G, Simmons M, Skandamis P, Suffredini E, Andersson DI, Bampidis V, Bengtsson-Palme J, Bouchard D, Ferran A, Kouba M, Lopez Puente S, Lopez-Alonso M, Nielsen SS, Pechova A, Petkova M, Girault S, Broglia A, Guerra B, Innocenti ML, Liebana E, Lopez-Galvez G, Manini P, Stella P, Peixe L. | EFSA J | 10.2903/j.efsa.2021.6863 | 2021 | ||
| A survey of Type III restriction-modification systems reveals numerous, novel epigenetic regulators controlling phase-variable regulons; phasevarions. | Atack JM, Yang Y, Seib KL, Zhou Y, Jennings MP. | Nucleic Acids Res | 10.1093/nar/gky192 | 2018 | ||
| Genetics | Haemophilus influenzae: using comparative genomics to accurately identify a highly recombinogenic human pathogen. | Price EP, Sarovich DS, Nosworthy E, Beissbarth J, Marsh RL, Pickering J, Kirkham LA, Keil AD, Chang AB, Smith-Vaughan HC. | BMC Genomics | 10.1186/s12864-015-1857-x | 2015 | |
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| Pathogenicity | Utilizing complement evasion strategies to design complement-based antibacterial immunotherapeutics: Lessons from the pathogenic Neisseriae. | Ram S, Shaughnessy J, DeOliveira RB, Lewis LA, Gulati S, Rice PA. | Immunobiology | 10.1016/j.imbio.2016.05.016 | 2016 | |
| Enzymology | Genetic evolution of low pathogenecity H9N2 avian influenza viruses in Tunisia: acquisition of new mutations. | Tombari W, Nsiri J, Larbi I, Guerin JL, Ghram A. | Virol J | 10.1186/1743-422x-8-467 | 2011 | |
| Enzymology | Validation of a real-time PCR assay for high-throughput detection of Avibacterium paragallinarum in chicken respiratory sites. | Clothier KA, Stoute S, Torain A, Crossley B | J Vet Diagn Invest | 10.1177/1040638719866484 | 2019 | |
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| Phylogeny | Reclassification of Pasteurella gallinarum, [Haemophilus] paragallinarum, Pasteurella avium and Pasteurella volantium as Avibacterium gallinarum gen. nov., comb. nov., Avibacterium paragallinarum comb. nov., Avibacterium avium comb. nov. and Avibacterium volantium comb. nov. | Blackall PJ, Christensen H, Beckenham T, Blackall LL, Bisgaard M | Int J Syst Evol Microbiol | 10.1099/ijs.0.63357-0 | 2005 | |
| Phylogeny | Comparative Genomics Analyses Support the Reclassification of Bisgaard Taxon 40 as Mergibacter gen. nov., With Mergibacter septicus sp. nov. as Type Species: Novel Insights Into the Phylogeny and Virulence Factors of a Pasteurellaceae Family Member Associated With Mortality Events in Seabirds. | De Luca E, Alvarez-Narvaez S, Maboni G, Baptista RP, Nemeth NM, Niedringhaus KD, Ladner JT, Lorch JM, Koroleva G, Lovett S, Palacios GF, Sanchez S. | Front Microbiol | 10.3389/fmicb.2021.667356 | 2021 | |
| Enzymology | Avibacterium endocarditidis sp. nov., isolated from valvular endocarditis in chickens. | Bisgaard M, Christensen JP, Bojesen AM, Christensen H. | Int J Syst Evol Microbiol | 10.1099/ijs.0.64879-0 | 2007 |
| #7586 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18554 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #34281 | ; Curators of the CIP; |
| #45837 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12835 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #68371 | Automatically annotated from API 50CH acid . |
| #68377 | Automatically annotated from API NH . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #121558 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103453 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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