Actinobacillus genomospecies 2 (DSM 14528, CCUG 15571, F141)

Name: Actinobacillus genomospecies 2 (DSM 14528, CCUG 15571, F141)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11674

Type strain

Strain Designation F141

Culture col. no. DSM 14528 CCUG 15571 F141

NCBI tax ID(s) 230709

Special Collections DSMZ CCUG

Actinobacillus genomospecies 2 F141 is an aerobe, mesophilic Proteobacterium that was isolated from Cavum oris, horse.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

Culture Collection Numbers

DSM 14528 CCUG 15571 F141

@ref 5285

Domain Bacteria

Phylum Proteobacteria

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Actinobacillus

Species Actinobacillus genomospecies 2

Full scientific name Actinobacillus genomospecies 2

Strain designation F141

Type strain no

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5285	COLUMBIA BLOOD AGAR (DSMZ Medium 429)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5285	positive	growth	37	mesophilic
46283	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
46283	aerobe
125439	obligate aerobe	91.6

Spore formation

@ref	Spore formation	Confidence
125438		97.74
125439		97.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	+	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
5285	+	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Equidae (Horse)
#Host Body-Site	#Oral cavity and airways	#Mouth

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
5285	Cavum oris, horse		Denmark	DNK	Europe
46283	Horse oral cavity	1981	Denmark	DNK	Europe

Taxonmaps

69479

Global distribution of 16S sequence AF247717 (>99% sequence identity) for Actinobacillus from Microbeatlas

Aquatic Samples
Soil Samples	2
Animal Samples	53
Plant Samples
Total Samples	55

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2977360v1 assembly for Actinobacillus genomosp. 2 CCUG15571	complete	GCA_029773605	230709.3	8086584699	230709	81.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5285	Actinobacillus sp. F 141 16S ribosomal RNA gene, partial sequence	AF247717	1461		157339

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinobacillus genomosp. 2 CCUG15571
NCBI: GCA_029773605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.50	no
125439	motility	BacteriaNetⓘ	no	65.50	no
125439	gram_stain	BacteriaNetⓘ	negative	66.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinobacillus genomosp. 2 CCUG15571
NCBI: GCA_029773605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	63.68	no
125438	anaerobic	anaerobicⓘ	no	86.80	yes
125438	aerobic	aerobicⓘ	no	72.76	no
125438	spore-forming	spore-formingⓘ	no	97.74	no
125438	thermophilic	thermophileⓘ	no	94.16	yes
125438	flagellated	motile2+ⓘ	no	80.34	no

Literature

References

#5285	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14528
#46283	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15571
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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