Paenibacillus frigoriresistens (DSM 25554, CCTCC AB 2011150, JCM 18141)

Name: Paenibacillus frigoriresistens (DSM 25554, CCTCC AB 2011150, JCM 18141)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11661

Type strain

Culture col. no. DSM 25554 CCTCC AB 2011150 JCM 18141 YIM 016 LMG 31322

NCBI tax ID(s) 59839

Special Collections DSMZ JCM

History DSMZ <- S.-K. Tang, YIM; YIM 016 <- H.-C. Jiang JCM <-- S.-K. Tang YIM 016.

Links

Paenibacillus frigoriresistens DSM 25554 is a bacterium that was isolated from soil from a peat bog.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401455

LMG 31322,JCM 18141,DSM 25554

@ref 20215

Last LPSN update 2026-05-29 08:27:37

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus frigoriresistens

Full scientific name Paenibacillus frigoriresistens Ming et al. 2012

Morphology

Cell morphology

@ref	Motility	Confidence
125439		91.232

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18048	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18048	positive	growth	25
67770	positive	growth	15

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.759

Spore formation

@ref	Spore formation	Confidence
125439		97.308

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18048	soil from a peat bog	Mohe county, Heilongjiang Province	China	CHN	Asia
67770	Soil sample collected from a peat bog in Mohe county	Heilongjiang Province, northeastern China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ314346 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	3
Soil Samples	11
Animal Samples	2
Plant Samples	1
Total Samples	17

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18048	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1326676v1 assembly for Paenibacillus alginolyticus LMG 31322	scaffold	GCA_013266765	1143711.3	8110004453	1143711	43.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18048	Paenibacillus frigoriresistens strain YIM 016 16S ribosomal RNA gene, partial sequence	JQ314346	1484		1143711

GC content

@ref	GC-content (mol%)	Method
18048	51.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1326676v1 assembly for Paenibacillus alginolyticus LMG 31322
NCBI: GCA_013266765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.76	no
125439	gram_stain	BacteriaNetⓘ	variable	74.85	no
125439	spore_formation	BacteriaNetⓘ	yes	97.31	no
125439	motility	BacteriaNetⓘ	yes	91.23	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus frigoriresistens strain LMG 31322
PATRIC: 1143711.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.38	no
125438	anaerobic	anaerobicⓘ	no	93.93	no
125438	spore-forming	spore-formingⓘ	yes	89.36	no
125438	aerobic	aerobicⓘ	yes	71.26	no
125438	thermophilic	thermophileⓘ	no	93.07	yes
125438	flagellated	motile2+ⓘ	yes	80.39	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Paenibacillus frigoriresistens Ming et al. 2012 as a later heterotypic synonym of Paenibacillus alginolyticus (Nakamura 1987) Shida et al. 1997.	Li B, Liang Z, Chen D, Mao W, Zhang R, Hu Z, Gao J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006888	2025
Phylogeny	Paenibacillus alba nov., isolated from peat soil.	Kim HS, Srinivasan S, Lee SS	Curr Microbiol	10.1007/s00284-015-0795-9	2015
Genetics	Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root.	Kampfer P, Lipski A, Lamothe L, Clermont D, Criscuolo A, McInroy JA, Glaeser SP.	Arch Microbiol	10.1007/s00203-022-03225-w	2022
Phylogeny	Paenibacillus anseongense sp. nov. a Silver Nanoparticle Producing Bacterium Isolated from Rhizospheric Soil.	Huq MA	Curr Microbiol	10.1007/s00284-020-02086-0	2020
Phylogeny	Paenibacillus aceris sp. nov., isolated from the rhizosphere of Acer okamotoanum, a plant native to Ulleungdo Island, Republic of Korea.	Hwang YJ, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001748	2017
Phylogeny	Paenibacillus qinlingensis sp. nov., an indole-3-acetic acid-producing bacterium isolated from roots of Sinopodophyllum hexandrum (Royle) Ying.	Xin K, Li M, Chen C, Yang X, Li Q, Cheng J, Zhang L, Shen X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001666	2017
Phylogeny	Paenibacillus oryzisoli sp. nov., isolated from the rhizosphere of rice.	Zhang J, Ma XT, Gao JS, Zhang CW, Zhao JJ, Zhang RJ, Ma LA, Zhang XX	Antonie Van Leeuwenhoek	10.1007/s10482-016-0777-3	2016
Phylogeny	Paenibacillus ferrarius sp. nov., isolated from iron mineral soil.	Cao Y, Chen F, Li Y, Wei S, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.063552-0	2014
Phylogeny	Paenibacillus frigoriresistens sp. nov., a novel psychrotroph isolated from a peat bog in Heilongjiang, Northern China.	Ming H, Nie GX, Jiang HC, Yu TT, Zhou EM, Feng HG, Tang SK, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9738-7	2012

References

#18048	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25554
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus frigoriresistens (DSM 25554, CCTCC AB 2011150, JCM 18141)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013266765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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