Name: Paenibacillus frigoriresistens DSM 25554
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11661

Type strain:

Species: Paenibacillus frigoriresistens

Culture col. no.: DSM 25554, CCTCC AB 2011150, JCM 18141, YIM 016, LMG 31322

Strain history: S.-K. Tang YIM 016.

NCBI tax ID(s): 1143711 (species)

SI-ID 401455

DSM 25554

Special Collections

DSMZ
JCM

Section

Paenibacillus frigoriresistens DSM 25554 is a spore-forming bacterium that was isolated from soil from a peat bog.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus frigoriresistens**
	Full Scientific Name (LPSN)	Paenibacillus frigoriresistens Ming et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18048]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #18048]

Culture medium growth

[Ref.: #18048]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18048]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18048]			growth	25 °C
[Ref.: #67770]			growth	15 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18048]	Sample type/isolated from	soil from a peat bog
[Ref.: #18048]	Geographic location (country and/or sea, region)	Mohe county, Heilongjiang Province
[Ref.: #18048]	Country	China
[Ref.: #18048]	Country ISO 3 Code	CHN
[Ref.: #18048]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil sample collected from a peat bog in Mohe county
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heilongjiang Province, northeastern China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ314346 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	3
Soil Samples	11
Animal Samples	2
Plant Samples	1
Total Samples	17

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18048]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18048]	Paenibacillus frigoriresistens strain YIM 016 16S ribosomal RNA gene, partial sequence	JQ314346	1484	GenBank ENA	1143711 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus frigoriresistens LMG 31322	GCA_013266765	scaffold	GenBank ENA	1143711 tax ID
[Ref.: #66792]	Paenibacillus frigoriresistens strain LMG 31322	1143711.3	wgs	PATRIC	1143711 tax ID	*

[Ref.: #18048]

GC-content

51.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus frigoriresistens LMG 31322 NCBI: GCA_013266765.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus frigoriresistens strain LMG 31322 PATRIC: 1143711.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	58.38	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.932	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.356	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	71.259	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.069	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.385	no

Availability in culture collections External links

[Ref.: #18048]

Culture collection no.

DSM 25554, CCTCC AB 2011150, JCM 18141, YIM 016, LMG 31322

[Ref.: #80885]

SI-ID 401455

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus anseongense sp. nov. a Silver Nanoparticle Producing Bacterium Isolated from Rhizospheric Soil.	Huq MA	Curr Microbiol	10.1007/s00284-020-02086-0	2020	*
Phylogeny	Paenibacillus aceris sp. nov., isolated from the rhizosphere of Acer okamotoanum, a plant native to Ulleungdo Island, Republic of Korea.	Hwang YJ, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001748	2017	*
Phylogeny	Paenibacillus qinlingensis sp. nov., an indole-3-acetic acid-producing bacterium isolated from roots of Sinopodophyllum hexandrum (Royle) Ying.	Xin K, Li M, Chen C, Yang X, Li Q, Cheng J, Zhang L, Shen X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001666	2017	*
Phylogeny	Paenibacillus oryzisoli sp. nov., isolated from the rhizosphere of rice.	Zhang J, Ma XT, Gao JS, Zhang CW, Zhao JJ, Zhang RJ, Ma LA, Zhang XX	Antonie Van Leeuwenhoek	10.1007/s10482-016-0777-3	2016	*
Phylogeny	Paenibacillus alba nov., isolated from peat soil.	Kim HS, Srinivasan S, Lee SS	Curr Microbiol	10.1007/s00284-015-0795-9	2015	*
Phylogeny	Paenibacillus ferrarius sp. nov., isolated from iron mineral soil.	Cao Y, Chen F, Li Y, Wei S, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.063552-0	2014	*
Phylogeny	Paenibacillus frigoriresistens sp. nov., a novel psychrotroph isolated from a peat bog in Heilongjiang, Northern China.	Ming H, Nie GX, Jiang HC, Yu TT, Zhou EM, Feng HG, Tang SK, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9738-7	2012	*

References

#18048

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25554

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80885

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401455.1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus frigoriresistens LMG 31322

Paenibacillus frigoriresistens strain LMG 31322

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