Paenibacillus jilunlii (DSM 23019, CGMCC 1.10239, CIP 110611)

Name: Paenibacillus jilunlii (DSM 23019, CGMCC 1.10239, CIP 110611)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11658

Type strain

Strain Designation Be17

Culture col. no. DSM 23019 CGMCC 1.10239 CIP 110611 Be17

NCBI tax ID(s) 682956

Special Collections DSMZ CIP

Links

Paenibacillus jilunlii Be17 is a spore-forming, mesophilic, Gram-positive prokaryote that was isolated from rhizosphere soil of Begonia semperflorens.

spore-forming Gram-positive motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404845

CIP110611,DSM 23019

@ref 20215

Last LPSN update 2025-12-16 09:49:39

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus jilunlii

Full scientific name Paenibacillus jilunlii Jin et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
120351	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16651	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled water
36534	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
120351	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16651	positive	growth	30	mesophilic
36534	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
120351
125438		91.626
125439		95.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
16651	rhizosphere soil of Begonia semperflorens	Begonia semperflorens	Beijing	China	CHN	Asia
120351	Environment, Rhizosphere soil of Begonia semperflorens		Beijing	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence GQ985393 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	22
Soil Samples	152
Animal Samples	13
Plant Samples	15
Total Samples	202

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16651	1	Risk group (German classification) According to TRBA 466
120351	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2667527409 annotated assembly for Paenibacillus jilunlii CGMCC 1.10239	scaffold	GCA_900102965	682956.4	2667527409	682956	63.31
66792	ASM154605v1 assembly for Paenibacillus jilunlii DSM 23019	contig	GCA_001546055	682956.3	2728368933	682956	54.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16651	Paenibacillus jilunlii strain Be17 16S ribosomal RNA gene, partial sequence	GQ985393	1467		682956

GC content

@ref	GC-content (mol%)	Method
16651	52.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus jilunlii CGMCC 1.10239
NCBI: GCA_900102965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.80	no
125439	motility	BacteriaNetⓘ	yes	88.10	no
125439	gram_stain	BacteriaNetⓘ	variable	88.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	85.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus jilunlii CGMCC 1.10239
NCBI: GCA_900102965.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	67.88	no
125438	anaerobic	anaerobicⓘ	no	94.86	no
125438	aerobic	aerobicⓘ	no	53.89	no
125438	spore-forming	spore-formingⓘ	yes	91.63	no
125438	thermophilic	thermophileⓘ	no	93.94	yes
125438	flagellated	motile2+ⓘ	yes	83.14	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Occurrence of vanHAX and Related Genes beyond the Actinobacteria Phylum.	Yushchuk O, Binda E, Fedorenko V, Marinelli F.	Genes (Basel)	10.3390/genes13111960	2022
Metabolism	The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins.	Geller AM, Pollin I, Zlotkin D, Danov A, Nachmias N, Andreopoulos WB, Shemesh K, Levy A.	Nat Commun	10.1038/s41467-021-23777-7	2021
Phylogeny	Paenibacillus salinicaeni sp. nov., isolated from saline silt sample.	Guo X, Zhou S, Wang YW, Wang HM, Kong DL, Zhu J, Dong WW, He MX, Zhao BQ, Hu GQ, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-016-0674-9	2016
Phylogeny	Paenibacillus jilunlii sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Begonia semperflorens.	Jin HJ, Zhou YG, Liu HC, Chen SF	Int J Syst Evol Microbiol	10.1099/ijs.0.025056-0	2010

References

#16651	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23019
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36534	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120351	Collection of Institut Pasteur ; Curators of the CIP; CIP 110611
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus jilunlii (DSM 23019, CGMCC 1.10239, CIP 110611)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900102965

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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