Paenibacillus residui (DSM 22072, CCUG 57263, MC-246)

Name: Paenibacillus residui (DSM 22072, CCUG 57263, MC-246)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11651

Type strain

Strain Designation MC-246, rec-246

Culture col. no. DSM 22072 CCUG 57263 MC-246 rec-246 CIP 110236

NCBI tax ID(s) 629724

Special Collections DSMZ CCUG Literature strains CIP

History <- C. M. Manaia, Escola Superior de Biotecnol., Univ. Católica Portuguesa, Porto, Portugal <- I. Vaz-Moreira and et al.; MC-246 CIP <- 2011, DSMZ <- C.M. Manaia, Catolica Portuguesa Univ., Porto, Portugal <- I. Vaz-Moreira, Catolica Portuguesa Univ., Porto, Portugal: strain MC-246

Links

Paenibacillus residui MC-246 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from municipal urban waste compost.

spore-forming Gram-variable motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 369269

DSM 22072,CCUG 57263,CECT 7591,CIP 110236

@ref 20215

Last LPSN update 2026-02-09 11:20:37

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus residui

Full scientific name Paenibacillus residui Vaz-Moreira et al. 2010

BacDive ID	Other strains from **Paenibacillus residui** (1)	Type strain
11652	P. residui MC-247, rec-247, DSM 22073, CCUG 57264

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29497	variable	1.4-1.6 µm	0.5 µm	rod-shaped
122157	positive			rod-shaped

Colony morphology

61262

Incubation period1 day

Pigmentation

29497

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16056	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 Distilled water
41040	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122157	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16056	positive	growth	30	mesophilic
29497	positive	growth	25-50
29497	positive	optimum	37	mesophilic
41040	positive	growth	30	mesophilic
61262	positive	growth	30-37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29497	positive	optimum	7
29497	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29497	aerobe
61262	aerobe
122157	obligate aerobe

Spore formation

29497

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29497	NaCl	positive	growth	0-2 %
29497	NaCl	positive	optimum	0-1 %

Observation

29497

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29497	17057 ChEBI	cellobiose	+	carbon source
29497	4853 ChEBI	esculin	+	hydrolysis
29497	28757 ChEBI	fructose	+	carbon source
29497	17234 ChEBI	glucose	+	carbon source
29497	17306 ChEBI	maltose	+	carbon source
122157	17632 ChEBI	nitrate	+	reduction
122157	16301 ChEBI	nitrite	-	reduction
29497	33942 ChEBI	ribose	+	carbon source
29497	17814 ChEBI	salicin	+	carbon source
29497	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122157	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
29497	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	-	3.1.3.2	from API zym
29497	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29497	catalase	+	1.11.1.6
122157	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29497	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122157	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
29497	urease	+	3.5.1.5
122157	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122157	-	+	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting
#Engineered	#Waste	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16056	municipal urban waste compost		Porto	Portugal	PRT	Europe
61262	Municipal urban waste compost	2005	Porto	Portugal	PRT	Europe
122157	Environment, Municipal urban waste compost		Porto	Portugal	PRT	Europe

Taxonmaps

69479

Global distribution of 16S sequence FN293173 (>99% sequence identity) for Paenibacillus residui subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	20
Animal Samples
Plant Samples
Total Samples	32

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16056	1	Risk group (German classification) According to TRBA 466
122157	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267720v1 assembly for Paenibacillus residui CCUG 57263	scaffold	GCA_042677205	629724	49.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16056	Paenibacillus residui partial 16S rRNA gene, type strain MC-246T	FN293173	1474		629724

GC content

@ref	GC-content (mol%)	Method
16056	49.3±0.6	high performance liquid chromatography (HPLC)
29497	49

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus residui sp. nov., isolated from urban waste compost.	Vaz-Moreira I, Figueira V, Lopes AR, Pukall R, Sproer C, Schumann P, Nunes OC, Manaia CM	Int J Syst Evol Microbiol	10.1099/ijs.0.014290-0	2009

References

#16056	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22072
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25897	IJSEM 2415 2010 ( DOI 10.1099/ijs.0.014290-0 , PubMed 19946057 )
#29497	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25897
#41040	; Curators of the CIP;
#61262	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57263
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122157	Collection of Institut Pasteur ; Curators of the CIP; CIP 110236
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Paenibacillus residui (DSM 22072, CCUG 57263, MC-246)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042677205

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media