Name: Paenibacillus residui MC-246
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11651

Type strain:

Species: Paenibacillus residui

Strain Designation: MC-246, rec-246

Culture col. no.: DSM 22072, CCUG 57263, CIP 110236

Strain history: CIP <- 2011, DSMZ <- C.M. Manaia, Catolica Portuguesa Univ., Porto, Portugal <- I. Vaz-Moreira, Catolica Portuguesa Univ., Porto, Portugal: strain MC-246

NCBI tax ID(s): 629724 (species)

SI-ID 369269

DSM 22072, CCUG 57263, CECT 7591, CIP 110236

Other strains from Paenibacillus residui

P. residui MC-247, rec-247, DSM 22073, CCUG ...

Section

Paenibacillus residui MC-246 is an aerobe, spore-forming, mesophilic bacterium that was isolated from municipal urban waste compost.

Gram-variable
motile
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus residui**
	Full Scientific Name (LPSN)	Paenibacillus residui Vaz-Moreira et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29497]	Gram stain	variable
[Ref.: #122157]	Gram stain	positive

[Ref.: #29497]	Cell length	1.4-1.6 µm

[Ref.: #29497]	Cell width	0.5 µm

[Ref.: #29497]	Cell shape	rod-shaped
[Ref.: #122157]	Cell shape	rod-shaped

[Ref.: #29497]	Motility	yes
[Ref.: #122157]	Motility	no

[Ref.: #61262]

Incubation period

1 day

[Ref.: #29497]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16056]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #16056]

Culture medium growth

[Ref.: #16056]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16056]

Culture medium composition

expand / minimize

[Ref.: #41040]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41040]

Culture medium growth

[Ref.: #41040]

Culture medium composition

expand / minimize

[Ref.: #122157]

Culture medium

CIP Medium 72

[Ref.: #122157]

Culture medium growth

[Ref.: #122157]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16056]	growth	30 °C
[Ref.: #29497]	growth	25-50 °C
[Ref.: #29497]	optimum	37 °C
[Ref.: #41040]	growth	30 °C
[Ref.: #61262]	growth	30-37 °C

[Ref.: #16056]	Temperature range	mesophilic
[Ref.: #29497]	Temperature range	mesophilic
[Ref.: #41040]	Temperature range	mesophilic
[Ref.: #61262]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29497]			optimum	7
[Ref.: #29497]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29497]	Oxygen tolerance	aerobe
[Ref.: #61262]	Oxygen tolerance	aerobe
[Ref.: #122157]	Oxygen tolerance	obligate aerobe

[Ref.: #29497]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29497]		NaCl		growth	0-2	%
[Ref.: #29497]		NaCl		optimum	0-1	%

[Ref.: #29497]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29497]	cellobiose ChEBI	+	carbon source
[Ref.: #29497]	esculin ChEBI	+	hydrolysis
[Ref.: #29497]	fructose ChEBI	+	carbon source
[Ref.: #29497]	glucose ChEBI	+	carbon source
[Ref.: #29497]	maltose ChEBI	+	carbon source
[Ref.: #122157]	nitrate ChEBI	+	reduction
[Ref.: #122157]	nitrite ChEBI	-	reduction
[Ref.: #29497]	ribose ChEBI	+	carbon source
[Ref.: #29497]	salicin ChEBI	+	carbon source
[Ref.: #29497]	trehalose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #122157]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29497]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #29497]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29497]	catalase	+	1.11.1.6
[Ref.: #122157]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29497]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122157]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #29497]	urease	+	3.5.1.5
[Ref.: #122157]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122157]	12454	-	+	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16056]	Sample type/isolated from	municipal urban waste compost
[Ref.: #16056]	Geographic location (country and/or sea, region)	Porto
[Ref.: #16056]	Country	Portugal
[Ref.: #16056]	Country ISO 3 Code	PRT
[Ref.: #16056]	Continent	Europe

[Ref.: #61262]	Sample type/isolated from	Municipal urban waste compost
[Ref.: #61262]	Sampling date	2005
[Ref.: #61262]	Geographic location (country and/or sea, region)	Porto
[Ref.: #61262]	Country	Portugal
[Ref.: #61262]	Country ISO 3 Code	PRT
[Ref.: #61262]	Continent	Europe

[Ref.: #122157]	Sample type/isolated from	Environment, Municipal urban waste compost
[Ref.: #122157]	Geographic location (country and/or sea, region)	Porto
[Ref.: #122157]	Country	Portugal
[Ref.: #122157]	Country ISO 3 Code	PRT
[Ref.: #122157]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Waste	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN293173 (>99% sequence identity) for Paenibacillus residui subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	20
Animal Samples
Plant Samples
Total Samples	32

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16056]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122157]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16056]	Paenibacillus residui partial 16S rRNA gene, type strain MC-246T	FN293173	1474	ENA	629724 tax ID

[Ref.: #16056]	GC-content	49.3±0.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29497]	GC-content	49 mol%

Availability in culture collections External links

[Ref.: #16056]

Culture collection no.

DSM 22072, CCUG 57263, CIP 110236

[Ref.: #80875]

SI-ID 369269

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus residui sp. nov., isolated from urban waste compost.	Vaz-Moreira I, Figueira V, Lopes AR, Pukall R, Sproer C, Schumann P, Nunes OC, Manaia CM	Int J Syst Evol Microbiol	10.1099/ijs.0.014290-0	2009	*

References

#16056

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22072

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29497

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25897 (see below)

#41040 ; Curators of the CIP;
#61262 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57263

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80875

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID369269.1 )

#122157 Collection of Institut Pasteur ; Curators of the CIP; CIP 110236

#25897

IJSEM 2415 2010 ( DOI 10.1099/ijs.0.014290-0 , PubMed 19946057 )

* These data were automatically processed and therefore are not curated

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