Paenibacillus tundrae (DSM 21291, CIP 110036, NRRL B-51094)

Name: Paenibacillus tundrae (DSM 21291, CIP 110036, NRRL B-51094)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11640

Type strain

Strain Designation A10b

Culture col. no. DSM 21291 CIP 110036 NRRL B-51094 A10b

NCBI tax ID(s) 528187

Special Collections DSMZ CIP Literature strains

History <- D.M. Nelson, Institute for Genomic Biology, University of Illinois, Urbana; A10b CIP <- 2009, DSMZ <- D.M. Nelson, Illinois Univ., Northern Alaska, USA: strain A10b

Links

Paenibacillus tundrae A10b is a facultative anaerobe, spore-forming, mesophilic prokaryote that was isolated from soil from moist acidic tundra.

spore-forming motile rod-shaped facultative anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 363422

DSM 21291,NRRL B-51094,CIP 110036

@ref 20215

Last LPSN update 2026-02-09 11:20:37

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus tundrae

Full scientific name Paenibacillus tundrae Nelson et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
29038		rod-shaped
123688	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15605	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
36865	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123688	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15605	positive	growth	30	mesophilic
29038	positive	growth	13-37
29038	positive	optimum	27	mesophilic
36865	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29038	positive	optimum	6.4
29038	positive	growth	5.3-8.8	alkaliphile

Physiology and metabolism

Oxygen tolerance

123688

Oxygen tolerancefacultative anaerobe

Spore formation

29038

Spore formationyes

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29038	30089 ChEBI	acetate	+	carbon source
29038	23652 ChEBI	dextrin	+	carbon source
29038	16236 ChEBI	ethanol	+	carbon source
29038	28757 ChEBI	fructose	+	carbon source
29038	28260 ChEBI	galactose	+	carbon source
29038	17234 ChEBI	glucose	+	carbon source
29038	17754 ChEBI	glycerol	+	carbon source
29038	28087 ChEBI	glycogen	+	carbon source
29038	17716 ChEBI	lactose	+	carbon source
29038	17306 ChEBI	maltose	+	carbon source
29038	29864 ChEBI	mannitol	+	carbon source
29038	37684 ChEBI	mannose	+	carbon source
29038	28053 ChEBI	melibiose	+	carbon source
29038	37657 ChEBI	methyl D-glucoside	+	carbon source
29038	17632 ChEBI	nitrate	+	reduction
123688	17632 ChEBI	nitrate	+	reduction
123688	16301 ChEBI	nitrite	-	reduction
29038	16634 ChEBI	raffinose	+	carbon source
29038	33942 ChEBI	ribose	+	carbon source
29038	17814 ChEBI	salicin	+	carbon source
29038	17992 ChEBI	sucrose	+	carbon source
29038	27082 ChEBI	trehalose	+	carbon source
29038	16704 ChEBI	uridine	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123688	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29038	catalase	+	1.11.1.6
123688	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123688	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
123688	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123688	-	-	+	+	-	+	-	-	-	-	+	+	+	+	-	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Acidic	-
#Climate	#Cold	#Tundra

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
15605	soil from moist acidic tundra	northern Alaska, Arctic Foothills (69°15'58'' N; 148°22'40'' W)	USA	USA	North America	69.2661	-148.378 69.2661/-148.378
123688	Environment, Soil, moist acidic tundra	Northern Alaska	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence EU558284 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	297
Soil Samples	2237
Animal Samples	665
Plant Samples	1871
Total Samples	5070

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15605	1	Risk group (German classification) According to TRBA 466
123688	1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15605	Paenibacillus tundrae strain Ab10b 16S ribosomal RNA gene, partial sequence	EU558284	1514		528187

GC content

@ref	GC-content (mol%)	Method
15605	50.3	thermal denaturation, midpoint method (Tm)
29038	50.3

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., psychrotolerant, xylan-degrading bacteria from Alaskan tundra.	Nelson DM, Glawe AJ, Labeda DP, Cann IK, Mackie RI	Int J Syst Evol Microbiol	10.1099/ijs.0.004572-0	2009

References

#15605	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21291
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25468	IJSEM 1708 2009 ( DOI 10.1099/ijs.0.004572-0 , PubMed 19542122 )
#29038	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25468
#36865	; Curators of the CIP;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123688	Collection of Institut Pasteur ; Curators of the CIP; CIP 110036
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus tundrae (DSM 21291, CIP 110036, NRRL B-51094)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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