Name: Paenibacillus tundrae A10b
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11640

Type strain:

Species: Paenibacillus tundrae

Strain Designation: A10b

Culture col. no.: DSM 21291, CIP 110036, NRRL B-51094

Strain history: CIP <- 2009, DSMZ <- D.M. Nelson, Illinois Univ., Northern Alaska, USA: strain A10b

NCBI tax ID(s): 528187 (species)

SI-ID 363422

DSM 21291, NRRL B-51094, CIP 110036

Section

Paenibacillus tundrae A10b is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil from moist acidic tundra.

motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus tundrae**
	Full Scientific Name (LPSN)	Paenibacillus tundrae Nelson et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #123688]	Gram stain	positive

[Ref.: #123688]	Cell shape	rod-shaped
[Ref.: #29038]	Cell shape	rod-shaped

[Ref.: #123688]	Motility	yes
[Ref.: #29038]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15605]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #15605]

Culture medium growth

[Ref.: #15605]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15605]

Culture medium composition

expand / minimize

[Ref.: #36865]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36865]

Culture medium growth

[Ref.: #36865]

Culture medium composition

expand / minimize

[Ref.: #123688]

Culture medium

CIP Medium 72

[Ref.: #123688]

Culture medium growth

[Ref.: #123688]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15605]	growth	30 °C
[Ref.: #29038]	growth	13-37 °C
[Ref.: #29038]	optimum	27 °C
[Ref.: #36865]	growth	30 °C

[Ref.: #15605]	Temperature range	mesophilic
[Ref.: #29038]	Temperature range	mesophilic
[Ref.: #36865]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29038]			optimum	6.4
[Ref.: #29038]			growth	5.3-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123688]

Oxygen tolerance

facultative anaerobe

[Ref.: #29038]

Ability of spore formation

yes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29038]	acetate ChEBI	+	carbon source
[Ref.: #29038]	dextrin ChEBI	+	carbon source
[Ref.: #29038]	ethanol ChEBI	+	carbon source
[Ref.: #29038]	fructose ChEBI	+	carbon source
[Ref.: #29038]	galactose ChEBI	+	carbon source
[Ref.: #29038]	glucose ChEBI	+	carbon source
[Ref.: #29038]	glycerol ChEBI	+	carbon source
[Ref.: #29038]	glycogen ChEBI	+	carbon source
[Ref.: #29038]	lactose ChEBI	+	carbon source
[Ref.: #29038]	maltose ChEBI	+	carbon source
[Ref.: #29038]	mannitol ChEBI	+	carbon source
[Ref.: #29038]	mannose ChEBI	+	carbon source
[Ref.: #29038]	melibiose ChEBI	+	carbon source
[Ref.: #29038]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #29038]	nitrate ChEBI	+	reduction
[Ref.: #123688]	nitrate ChEBI	+	reduction
[Ref.: #123688]	nitrite ChEBI	-	reduction
[Ref.: #29038]	raffinose ChEBI	+	carbon source
[Ref.: #29038]	ribose ChEBI	+	carbon source
[Ref.: #29038]	salicin ChEBI	+	carbon source
[Ref.: #29038]	sucrose ChEBI	+	carbon source
[Ref.: #29038]	trehalose ChEBI	+	carbon source
[Ref.: #29038]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123688]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29038]	catalase	+	1.11.1.6
[Ref.: #123688]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123688]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123688]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123688]	12310	-	-	+	+	-	+	-	-	-	-	+	+	+	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15605]	Sample type/isolated from	soil from moist acidic tundra
[Ref.: #15605]	Geographic location (country and/or sea, region)	northern Alaska, Arctic Foothills (69°15'58'' N; 148°22'40'' W)
[Ref.: #15605]	Country	USA
[Ref.: #15605]	Country ISO 3 Code	USA
[Ref.: #15605]	Continent	North America
[Ref.: #15605]	Geographic location	69.2661°/-148.3780°

[Ref.: #123688]	Sample type/isolated from	Environment, Soil, moist acidic tundra
[Ref.: #123688]	Geographic location (country and/or sea, region)	Northern Alaska
[Ref.: #123688]	Country	United States of America
[Ref.: #123688]	Country ISO 3 Code	USA
[Ref.: #123688]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Acidic	-
#Climate	#Cold	#Tundra

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU558284 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	297
Soil Samples	2237
Animal Samples	665
Plant Samples	1871
Total Samples	5070

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15605]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123688]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15605]	Paenibacillus tundrae strain Ab10b 16S ribosomal RNA gene, partial sequence	EU558284	1514	ENA	528187 tax ID

[Ref.: #15605]	GC-content	50.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29038]	GC-content	50.3 mol%

Availability in culture collections External links

[Ref.: #15605]

Culture collection no.

DSM 21291, CIP 110036, NRRL B-51094

[Ref.: #80864]

SI-ID 363422

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., psychrotolerant, xylan-degrading bacteria from Alaskan tundra.	Nelson DM, Glawe AJ, Labeda DP, Cann IK, Mackie RI	Int J Syst Evol Microbiol	10.1099/ijs.0.004572-0	2009	*

References

#15605

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21291

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29038

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25468 (see below)

#36865 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80864

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363422.1 )

#123688 Collection of Institut Pasteur ; Curators of the CIP; CIP 110036

#25468

IJSEM 1708 2009 ( DOI 10.1099/ijs.0.004572-0 , PubMed 19542122 )

* These data were automatically processed and therefore are not curated

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