Paenibacillus thailandensis (DSM 22866, KCTC 13043, PCU 275)

Name: Paenibacillus thailandensis (DSM 22866, KCTC 13043, PCU 275)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11637

Type strain

Strain Designation S3-4A

Culture col. no. DSM 22866 KCTC 13043 PCU 275 TISTR 1827 S3-4A

NCBI tax ID(s) 393250

Special Collections DSMZ KCTC Literature strains

History <- KCTC; KCTC 13043 <- S Tanasupawat, Chulalongkorn Univ., Thailand

Links

Paenibacillus thailandensis S3-4A is a facultative anaerobe, spore-forming, mesophilic prokaryote that was isolated from soil sample.

spore-forming Gram-positive motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399749

KCTC 13043,DSM 22866

@ref 20215

Last LPSN update 2025-12-16 09:49:38

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus thailandensis

Full scientific name Paenibacillus thailandensis Khianngam et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement
28883	positive	4-12 µm	0.8-1.2 µm	rod-shaped
67771				rod-shaped	peritrichous
67771	positive

Pigmentation

28883

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16588	XYLAN MEDIUM (DSMZ Medium 1235)		Medium recipe at MediaDive	Name: XYLAN MEDIUM (DSMZ Medium 1235) Composition: Agar 15.0 g/l Xylan 10.0 g/l Peptone 5.0 g/l K2HPO4 4.0 g/l MgSO4 x 7 H2O 1.0 g/l Yeast extract 1.0 g/l KCl 0.2 g/l FeSO4 x 7 H2O 0.02 g/l Distilled water
16588	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16588	positive	growth	30	mesophilic
28883	positive	growth	20-55
28883	positive	optimum	37	mesophilic
67771	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
28883	positive	optimum	7.5
28883	positive	growth	7-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
28883	facultative anaerobe
67771	aerobe

Spore formation

@ref	Type of spore	Spore formation
28883
67771	endospore

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28883	22599 ChEBI	arabinose	+	carbon source
28883	17057 ChEBI	cellobiose	+	carbon source
28883	4853 ChEBI	esculin	+	hydrolysis
28883	28757 ChEBI	fructose	+	carbon source
28883	33984 ChEBI	fucose	+	carbon source
28883	28260 ChEBI	galactose	+	carbon source
28883	24265 ChEBI	gluconate	+	carbon source
28883	17234 ChEBI	glucose	+	carbon source
28883	17754 ChEBI	glycerol	+	carbon source
28883	28087 ChEBI	glycogen	+	carbon source
28883	18403 ChEBI	L-arabitol	+	carbon source
28883	17716 ChEBI	lactose	+	carbon source
28883	17306 ChEBI	maltose	+	carbon source
28883	29864 ChEBI	mannitol	+	carbon source
28883	37684 ChEBI	mannose	+	carbon source
28883	28053 ChEBI	melibiose	+	carbon source
28883	506227 ChEBI	N-acetylglucosamine	+	carbon source
28883	16634 ChEBI	raffinose	+	carbon source
28883	26546 ChEBI	rhamnose	+	carbon source
28883	15963 ChEBI	ribitol	+	carbon source
28883	33942 ChEBI	ribose	+	carbon source
28883	17814 ChEBI	salicin	+	carbon source
28883	30911 ChEBI	sorbitol	+	carbon source
28883	27082 ChEBI	trehalose	+	carbon source
28883	17151 ChEBI	xylitol	+	carbon source
28883	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
28883	catalase	+	1.11.1.6
28883	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16588	soil sample	Nan province, Muang district	Thailand	THA	Asia
67771	From soil		Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB265205 (>99% sequence identity) for Paenibacillus thailandensis subclade from Microbeatlas

Aquatic Samples	4
Soil Samples	6
Animal Samples	6
Plant Samples	6
Total Samples	22

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16588	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268536v1 assembly for Paenibacillus thailandensis TISTR 1827	scaffold	GCA_042685365	393250	65.93
124043	ASM4268198v1 assembly for Paenibacillus thailandensis PCU 275	contig	GCA_042681985	393250	62.9

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
16588	Paenibacillus thailandensis gene for 16S rRNA, partial sequence	AB265205	1485	393250
124043	Paenibacillus thailandensis strain PCU 275 16S ribosomal RNA gene, partial sequence.	MT758142	1352	393250
124043	Paenibacillus thailandensis strain PCU 275 16S ribosomal RNA gene, partial sequence.	MT760012	1352	393250

GC content

16588

GC-content (mol%)52.7

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis.	Heo J, Kim SJ, Kim JS, Hong SB, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003860	2020
Phylogeny	Paenibacillus arachidis sp. nov., isolated from groundnut seeds.	Sadaf K, Tushar L, Nirosha P, Podile AR, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.001124	2016
Phylogeny	Paenibacillus populi sp. nov., a novel bacterium isolated from the rhizosphere of Populus alba.	Han TY, Tong XM, Wang YW, Wang HM, Chen XR, Kong DL, Guo X, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-015-0521-4	2015
Phylogeny	Paenibacillus chungangensis sp. nov., isolated from a tidal-flat sediment.	Park MH, Traiwan J, Jung MY, Nam YS, Jeong JH, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.021832-0	2010
Phylogeny	Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil.	Khianngam S, Akaracharanya A, Tanasupawat S, Lee KC, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.000406-0	2009

References

#16588	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22866
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25323	IJSEM 564 2009 ( DOI 10.1099/ijs.0.000406-0 , PubMed 19244442 )
#28883	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25323
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus thailandensis (DSM 22866, KCTC 13043, PCU 275)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042685365

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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