Paenibacillus castaneae (DSM 19417, CECT 7279, Ch-32)

Name: Paenibacillus castaneae (DSM 19417, CECT 7279, Ch-32)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11634

Type strain

Strain Designation Ch-32

Culture col. no. DSM 19417 CECT 7279 Ch-32

NCBI tax ID(s) 474957

Special Collections DSMZ Literature strains

History DSMZ <- Angel Valverde Portal; Ch-32

Links

Paenibacillus castaneae Ch-32 is an aerobe, spore-forming, Gram-variable bacterium that was isolated from phyllosphere of sweet chestnut tree .

spore-forming Gram-variable motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 308720

LMG 24144,CECT 7279,DSM 19417

@ref 20215

Last LPSN update 2026-05-29 08:27:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus castaneae

Full scientific name Paenibacillus castaneae Valverde et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
32544	variable	rod-shaped

Pigmentation

32544

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8095	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Soil extract 500.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8095	positive	growth	25-30
32544	positive	growth	30
32544	positive	optimum	30

Culture pH

@ref	Ability	Type	PH
32544	positive	optimum	7
32544	positive	growth	5.7-7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32544	aerobe
125439	facultative anaerobe	95.592

Spore formation

@ref	Spore formation	Confidence
32544
125438		94.451
125439		96.913

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32544	NaCl	positive	growth	2 %
32544	NaCl	positive	optimum	2 %

Observation

32544

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32544	22599 ChEBI	arabinose	+	carbon source
32544	4853 ChEBI	esculin	+	hydrolysis
32544	24265 ChEBI	gluconate	+	carbon source
32544	17234 ChEBI	glucose	+	carbon source
32544	17306 ChEBI	maltose	+	carbon source
32544	29864 ChEBI	mannitol	+	carbon source
32544	37684 ChEBI	mannose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32544	catalase	+	1.11.1.6
32544	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
8095	phyllosphere of sweet chestnut tree (Castanea sativa Miller)	Castanea sativa	Salamanca province, Sierra de Francia region	Spain	ESP	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8095	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM288444v1 assembly for Paenibacillus castaneae DSM 19417	scaffold	GCA_002884445	474957.3	2916384205	474957	76.06
66792	ASM1176140v1 assembly for Paenibacillus castaneae CECT 7279	scaffold	GCA_011761405	474957.4	2824397579	474957	69.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8095	Paenibacillus castaneae strain Ch-32 16S ribosomal RNA gene, complete sequence	EU099594	1549		474957

GC content

@ref	GC-content (mol%)	Method
8095	46	thermal denaturation, midpoint method (Tm)
32544	46

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM288444v1 assembly for Paenibacillus castaneae DSM 19417
NCBI: GCA_002884445

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.59	no
125439	motility	BacteriaNetⓘ	yes	89.70	no
125439	gram_stain	BacteriaNetⓘ	variable	69.01	no
125439	spore_formation	BacteriaNetⓘ	yes	96.91	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus castaneae DSM 19417
NCBI: GCA_002884445.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.74	yes
125438	anaerobic	anaerobicⓘ	no	92.45	no
125438	aerobic	aerobicⓘ	yes	67.59	yes
125438	spore-forming	spore-formingⓘ	yes	94.45	yes
125438	thermophilic	thermophileⓘ	no	93.90	yes
125438	flagellated	motile2+ⓘ	yes	83.77	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Paenibacillus larvae-Directed Bacteriophage HB10c2 and Its Application in American Foulbrood-Affected Honey Bee Larvae.	Beims H, Wittmann J, Bunk B, Sproer C, Rohde C, Gunther G, Rohde M, von der Ohe W, Steinert M.	Appl Environ Microbiol	10.1128/aem.00804-15	2015
Phylogeny	Paenibacillus paridis sp. nov., an endophytic bacterial species isolated from the root of Paris polyphylla Smith var. yunnanensis.	Wang M, Jiang XW, Tang SK, Zhi XY, Yang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.003997	2020
Phylogeny	Paenibacillus sinopodophylli sp. nov., a siderophore-producing endophytic bacterium isolated from roots of Sinopodophyllum hexandrum (Royle) Ying.	Chen C, Xin K, Li M, Li X, Cheng J, Zhang L, Shen X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001458	2016
Phylogeny	Paenibacillus endophyticus sp. nov., isolated from nodules of Cicer arietinum.	Carro L, Flores-Felix JD, Cerda-Castillo E, Ramirez-Bahena MH, Igual JM, Tejedor C, Velazquez E, Peix A	Int J Syst Evol Microbiol	10.1099/ijs.0.050310-0	2013
Phylogeny	Paenibacillus catalpae sp. nov., isolated from the rhizosphere soil of Catalpa speciosa.	Zhang J, Wang ZT, Yu HM, Ma Y	Int J Syst Evol Microbiol	10.1099/ijs.0.040659-0	2012
Phylogeny	Paenibacillus algorifonticola sp. nov., isolated from a cold spring.	Tang QY, Yang N, Wang J, Xie YQ, Ren B, Zhou YG, Gu MY, Mao J, Li WJ, Shi YH, Zhang LX	Int J Syst Evol Microbiol	10.1099/ijs.0.025346-0	2010
Phylogeny	Paenibacillus prosopidis sp. nov., isolated from the nodules of Prosopis farcta.	Valverde A, Fterich A, Mahdhi M, Ramirez-Bahena MH, Caviedes MA, Mars M, Velazquez E, Rodriguez-Llorente ID	Int J Syst Evol Microbiol	10.1099/ijs.0.014241-0	2009
Phylogeny	Paenibacillus castaneae sp. nov., isolated from the phyllosphere of Castanea sativa Miller.	Valverde A, Peix A, Rivas R, Velazquez E, Salazar S, Santa-Regina I, Rodriguez-Barrueco C, Igual JM	Int J Syst Evol Microbiol	10.1099/ijs.0.65663-0	2008

References

#8095	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19417
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28762	IJSEM 2560 2008 ( DOI 10.1099/ijs.0.65663-0 , PubMed 18984693 )
#32544	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28762
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus castaneae (DSM 19417, CECT 7279, Ch-32)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002884445

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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