Paenibacillus konsidensis (DSM 21992, JCM 14798, KCTC 13165)

Name: Paenibacillus konsidensis (DSM 21992, JCM 14798, KCTC 13165)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11633

Type strain

Strain Designation ABB-ID-KSY9, LBY

Culture col. no. DSM 21992 JCM 14798 KCTC 13165 ABB-ID-KSY9 LBY 2 more

NCBI tax ID(s) 479474

Special Collections DSMZ JCM KCTC CIP Literature strains

History DSMZ <- JCM/RIKEN <- K. S. Ko, Dept. Molecular Cell Biology, Sungkyunkwan Univ. School of Medicine, Suwon, Republic of Korea; LBY JCM <-- K. S. Ko strain LBY. KCTC <- KS Ko, Sungkyunkwan Univ. School of Medicine, Korea CIP <- 2008, JCM <- K. S. Ko, Sungkyunkwan Univ. School of Med., Suwon, Korea: strain LBY

Links

Paenibacillus konsidensis ABB-ID-KSY9 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from Blood of a febrile patient.

spore-forming Gram-positive rod-shaped facultative anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 358892

DSM 21992,JCM 14798,KCTC 13165,CIP 109915

@ref 20215

Last LPSN update 2026-05-29 08:27:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus konsidensis

Full scientific name Paenibacillus konsidensis Ko et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32468	positive	2-3.5 µm	0.5 µm	rod-shaped
67771				rod-shaped
67771	positive
120464	positive			rod-shaped

Pigmentation

32468

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16085	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
41615	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120464	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16085	positive	growth	35
32468	positive	growth	30-42
32468	positive	optimum	37
41615	positive	growth	37
67770	positive	growth	37
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH
32468	positive	optimum	7
32468	positive	growth	5.2-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32468	facultative anaerobe
67771	facultative anaerobe
120464	obligate aerobe

Spore formation

@ref	Type of spore	Spore formation
32468
67771	endospore
120464

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32468	NaCl	positive	growth	2 %
32468	NaCl	positive	optimum	2 %

Observation

32468

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32468	22599 ChEBI	arabinose	+	carbon source
32468	17057 ChEBI	cellobiose	+	carbon source
32468	28757 ChEBI	fructose	+	carbon source
32468	28260 ChEBI	galactose	+	carbon source
32468	24265 ChEBI	gluconate	+	carbon source
32468	17234 ChEBI	glucose	+	carbon source
32468	17716 ChEBI	lactose	+	carbon source
32468	17306 ChEBI	maltose	+	carbon source
32468	37684 ChEBI	mannose	+	carbon source
32468	506227 ChEBI	N-acetylglucosamine	+	carbon source
32468	17632 ChEBI	nitrate	+	reduction
120464	17632 ChEBI	nitrate	+	reduction
120464	16301 ChEBI	nitrite	-	reduction
32468	16634 ChEBI	raffinose	+	carbon source
32468	33942 ChEBI	ribose	+	carbon source
32468	17992 ChEBI	sucrose	+	carbon source
32468	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120464	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120464	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120464	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
120464	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120464	-	-	+	+	-	-	-	-	-	-	+	+	+	+	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
16085	Blood of a febrile patient	Homo sapiens	Republic of Korea	KOR	Asia
67770	Blood of a febrile patient	Homo sapiens
67771	From blood of a febrile patient(75-year-old male)	Homo sapiens	Republic of Korea	KOR	Asia
120464	Human, Blood	Homo sapiens	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
16085	yes, in single cases	1	Risk group (German classification) According to TRBA 466
120464		1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16085	Paenibacillus konsidensis 16S ribosomal RNA gene, partial sequence	EU081509	1450		479474

GC content

@ref	GC-content (mol%)	Method
16085	51.3	thermal denaturation, midpoint method (Tm)
32468	51.3

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus konsidensis sp. nov., isolated from a patient.	Ko KS, Kim YS, Lee MY, Shin SY, Jung DS, Peck KR, Song JH	Int J Syst Evol Microbiol	10.1099/ijs.0.65534-0	2008

References

#16085	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21992
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28689	IJSEM 2164 2008 ( DOI 10.1099/ijs.0.65534-0 , PubMed 18768623 )
#32468	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28689
#41615	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#120464	Collection of Institut Pasteur ; Curators of the CIP; CIP 109915
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus konsidensis (DSM 21992, JCM 14798, KCTC 13165)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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