Name: Paenibacillus konsidensis ABB-ID-KSY9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11633

Type strain:

Species: Paenibacillus konsidensis

Strain Designation: ABB-ID-KSY9, LBY

Culture col. no.: DSM 21992, JCM 14798, KCTC 13165, ABB ID-KSY9, CIP 109915

Strain history: CIP <- 2008, JCM <- K. S. Ko, Sungkyunkwan Univ. School of Med., Suwon, Korea: strain LBY

NCBI tax ID(s): 479474 (species)

SI-ID 358892

JCM 14798, KCTC 13165, CIP 109915

Section

Paenibacillus konsidensis ABB-ID-KSY9 is a facultative anaerobe, spore-forming, mesophilic human pathogen that was isolated from Blood of a febrile patient.

Gram-positive
rod-shaped
spore-forming
facultative anaerobe
human pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus konsidensis**
	Full Scientific Name (LPSN)	Paenibacillus konsidensis Ko et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32468]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #120464]	Gram stain	positive

[Ref.: #32468]	Cell length	2-3.5 µm

[Ref.: #32468]	Cell width	0.5 µm

[Ref.: #32468]	Cell shape	rod-shaped
[Ref.: #120464]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #120464]	Motility	yes

[Ref.: #32468]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16085]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #16085]

Culture medium growth

[Ref.: #16085]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16085]

Culture medium composition

expand / minimize

[Ref.: #41615]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41615]

Culture medium growth

[Ref.: #41615]

Culture medium composition

expand / minimize

[Ref.: #120464]

Culture medium

CIP Medium 72

[Ref.: #120464]

Culture medium growth

[Ref.: #120464]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16085]	growth	35 °C
[Ref.: #32468]	growth	30-42 °C
[Ref.: #32468]	optimum	37 °C
[Ref.: #41615]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #16085]	Temperature range	mesophilic
[Ref.: #32468]	Temperature range	mesophilic
[Ref.: #41615]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32468]			optimum	7
[Ref.: #32468]			growth	5.2-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32468]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe
[Ref.: #120464]	Oxygen tolerance	obligate aerobe

[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #32468]	Ability of spore formation	yes
[Ref.: #120464]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32468]		NaCl		growth	2	%
[Ref.: #32468]		NaCl		optimum	2	%

[Ref.: #32468]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32468]	arabinose ChEBI	+	carbon source
[Ref.: #32468]	cellobiose ChEBI	+	carbon source
[Ref.: #32468]	fructose ChEBI	+	carbon source
[Ref.: #32468]	galactose ChEBI	+	carbon source
[Ref.: #32468]	gluconate ChEBI	+	carbon source
[Ref.: #32468]	glucose ChEBI	+	carbon source
[Ref.: #32468]	lactose ChEBI	+	carbon source
[Ref.: #32468]	maltose ChEBI	+	carbon source
[Ref.: #32468]	mannose ChEBI	+	carbon source
[Ref.: #32468]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32468]	nitrate ChEBI	+	reduction
[Ref.: #120464]	nitrate ChEBI	+	reduction
[Ref.: #120464]	nitrite ChEBI	-	reduction
[Ref.: #32468]	raffinose ChEBI	+	carbon source
[Ref.: #32468]	ribose ChEBI	+	carbon source
[Ref.: #32468]	sucrose ChEBI	+	carbon source
[Ref.: #32468]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120464]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120464]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120464]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120464]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120464]	12215	-	-	+	+	-	-	-	-	-	-	+	+	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16085]	Sample type/isolated from	Blood of a febrile patient
[Ref.: #16085]	Country	Republic of Korea
[Ref.: #16085]	Country ISO 3 Code	KOR
[Ref.: #16085]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Blood of a febrile patient

[Ref.: #67771]	Sample type/isolated from	From blood of a febrile patient(75-year-old male)
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120464]	Sample type/isolated from	Human, Blood
[Ref.: #120464]	Country	Republic of Korea
[Ref.: #120464]	Country ISO 3 Code	KOR
[Ref.: #120464]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16085]	Pathogenicity (human)	yes, in single cases
[Ref.: #16085]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120464]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16085]	Paenibacillus konsidensis 16S ribosomal RNA gene, partial sequence	EU081509	1450	ENA	479474 tax ID

[Ref.: #16085]	GC-content	51.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32468]	GC-content	51.3 mol%

Availability in culture collections External links

[Ref.: #16085]

Culture collection no.

DSM 21992, JCM 14798, KCTC 13165, ABB ID-KSY9, CIP 109915

[Ref.: #80858]

SI-ID 358892

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus konsidensis sp. nov., isolated from a patient.	Ko KS, Kim YS, Lee MY, Shin SY, Jung DS, Peck KR, Song JH	Int J Syst Evol Microbiol	10.1099/ijs.0.65534-0	2008	*

References

#16085

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21992

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32468

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28689 (see below)

#41615 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#80858

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID358892.1 )

#120464 Collection of Institut Pasteur ; Curators of the CIP; CIP 109915

#28689

IJSEM 2164 2008 ( DOI 10.1099/ijs.0.65534-0 , PubMed 18768623 )

* These data were automatically processed and therefore are not curated

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