Name: Paenibacillus taichungensis V10537
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11626

Type strain:

Species: Paenibacillus taichungensis

Strain Designation: V10537

Culture col. no.: DSM 19942, BCRC 17757, CIP 110615

Strain history: CIP <- 2013, DSMZ <- F.L. Lee, Food Industry Research and Develop. Inst., Hsinchu, Taiwan: strain V10537

NCBI tax ID(s): 484184 (species)

SI-ID 399111

DSM 19942, CIP 110615

Other strains from Paenibacillus taichungensis

P. taichungensis FR1-42, DSM 30730

Section

Paenibacillus taichungensis V10537 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil.

Gram-variable
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus taichungensis**
	Full Scientific Name (LPSN)	Paenibacillus taichungensis Lee et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32613]	Gram stain	variable
[Ref.: #123415]	Gram stain	positive

[Ref.: #32613]	Cell length	1.8-6.8 µm

[Ref.: #32613]	Cell width	0.9-1.4 µm

[Ref.: #32613]	Cell shape	rod-shaped
[Ref.: #123415]	Cell shape	rod-shaped

[Ref.: #32613]	Motility	yes
[Ref.: #123415]	Motility	yes

[Ref.: #32613]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8400]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #8400]

Culture medium growth

[Ref.: #8400]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8400]

Culture medium composition

expand / minimize

[Ref.: #123415]

Culture medium

CIP Medium 72

[Ref.: #123415]

Culture medium growth

[Ref.: #123415]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8400]	growth	30 °C
[Ref.: #32613]	growth	05-40 °C
[Ref.: #32613]	optimum	30 °C

[Ref.: #8400]	Temperature range	mesophilic
[Ref.: #32613]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32613]			optimum	06-08
[Ref.: #32613]			growth	05-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32613]

Oxygen tolerance

facultative anaerobe

[Ref.: #32613]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32613]		NaCl		growth	7	%
[Ref.: #32613]		NaCl		optimum	7	%

[Ref.: #32613]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32613]	acetate ChEBI	+	carbon source
[Ref.: #32613]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #32613]	arabinose ChEBI	+	carbon source
[Ref.: #32613]	cellobiose ChEBI	+	carbon source
[Ref.: #32613]	dextrin ChEBI	+	carbon source
[Ref.: #32613]	fructose ChEBI	+	carbon source
[Ref.: #32613]	fucose ChEBI	+	carbon source
[Ref.: #32613]	gluconate ChEBI	+	carbon source
[Ref.: #32613]	glycerol ChEBI	+	carbon source
[Ref.: #32613]	maltose ChEBI	+	carbon source
[Ref.: #32613]	mannose ChEBI	+	carbon source
[Ref.: #32613]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #32613]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32613]	raffinose ChEBI	+	carbon source
[Ref.: #32613]	ribose ChEBI	+	carbon source
[Ref.: #32613]	salicin ChEBI	+	carbon source
[Ref.: #32613]	sorbitol ChEBI	+	carbon source
[Ref.: #32613]	sucrose ChEBI	+	carbon source
[Ref.: #32613]	trehalose ChEBI	+	carbon source
[Ref.: #32613]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32613]	acid phosphatase	+	3.1.3.2
[Ref.: #32613]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32613]	catalase	+	1.11.1.6
[Ref.: #32613]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8400]	Sample type/isolated from	soil
[Ref.: #8400]	Geographic location (country and/or sea, region)	Taichung City
[Ref.: #8400]	Country	Taiwan
[Ref.: #8400]	Country ISO 3 Code	TWN
[Ref.: #8400]	Continent	Asia

[Ref.: #123415]	Sample type/isolated from	Environment, Soil
[Ref.: #123415]	Geographic location (country and/or sea, region)	Taichung
[Ref.: #123415]	Country	Taiwan
[Ref.: #123415]	Country ISO 3 Code	TWN
[Ref.: #123415]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU179327 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	208
Soil Samples	1643
Animal Samples	410
Plant Samples	609
Total Samples	2870

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8400]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123415]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8400]	Paenibacillus taichungensis strain BCRC 17757 16S ribosomal RNA gene, partial sequence	EU179327	1495	ENA	484184 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus taichungensis DSM 19942	GCA_013359905	contig	GenBank	484184 tax ID	*
[Ref.: #66792]	Paenibacillus taichungensis strain DSM 19942	484184.9	wgs	PATRIC	484184 tax ID	*

[Ref.: #8400]	GC-content	46.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32613]	GC-content	46.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus taichungensis strain DSM 19942 PATRIC: 484184.9
[Ref.: #69480]	gram-positive	yes	67.153	yes
[Ref.: #69480]	anaerobic	no	98.111	yes
[Ref.: #69480]	halophile	no	71.948	yes
[Ref.: #69480]	spore-forming	yes	95.516	yes
[Ref.: #69480]	glucose-util	yes	90.795	no
[Ref.: #69480]	aerobic	yes	78.587	yes
[Ref.: #69480]	thermophile	no	99.823	no
[Ref.: #69480]	motile	yes	89.333	yes
[Ref.: #69480]	flagellated	yes	73.931	no
[Ref.: #69480]	glucose-ferment	no	85.35	no

Availability in culture collections External links

[Ref.: #8400]

Culture collection no.

DSM 19942, BCRC 17757, CIP 110615

[Ref.: #80851]

SI-ID 399111

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus xylanivorans sp. nov., a xylan-degrading bacterium isolated from decaying forest soil.	Ghio S, Sauka DH, Ferrari AE, Piccini FE, Ontanon OM, Campos E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003686	2019	*
Phylogeny	Paenibacillus dongdonensis sp. nov., isolated from rhizospheric soil of Elymus tsukushiensis.	Son JS, Kang HU, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijs.0.061077-0	2014	*
Phylogeny	Paenibacillus taichungensis sp. nov., from soil in Taiwan.	Lee FL, Tien CJ, Tai CJ, Wang LT, Liu YC, Chern LL	Int J Syst Evol Microbiol	10.1099/ijs.0.65776-0	2008	*

References

#8400

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19942

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32613

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28826 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80851

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399111.1 )

#123415 Collection of Institut Pasteur ; Curators of the CIP; CIP 110615

#28826

IJSEM 2640 2008 ( DOI 10.1099/ijs.0.65776-0 , PubMed 18984707 )

* These data were automatically processed and therefore are not curated

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Paenibacillus taichungensis strain DSM 19942

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