Paenibacillus taichungensis (DSM 19942, BCRC 17757, CIP 110615)

Name: Paenibacillus taichungensis (DSM 19942, BCRC 17757, CIP 110615)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11626

Type strain

Strain Designation V10537

Culture col. no. DSM 19942 BCRC 17757 CIP 110615 V10537

NCBI tax ID(s) 484184

Special Collections DSMZ CIP Literature strains

History <- Fwu-Ling Lee; V10537 CIP <- 2013, DSMZ <- F.L. Lee, Food Industry Research and Develop. Inst., Hsinchu, Taiwan: strain V10537

Links

Paenibacillus taichungensis V10537 is a facultative anaerobe, spore-forming, mesophilic prokaryote that was isolated from soil.

spore-forming Gram-variable motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399111

BCRC 17757,DSM 19942,CIP 110615

@ref 20215

Last LPSN update 2026-02-09 11:20:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus taichungensis

Full scientific name Paenibacillus taichungensis Lee et al. 2008

BacDive ID	Other strains from **Paenibacillus taichungensis** (1)	Type strain
11627	P. taichungensis FR1-42, DSM 30730

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32613	variable	1.8-6.8 µm	0.9-1.4 µm	rod-shaped
123415	positive			rod-shaped
125439					91.9

Pigmentation

32613

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8400	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
123415	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8400	positive	growth	30	mesophilic
32613	positive	growth	05-40
32613	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32613	positive	optimum	06-08
32613	positive	growth	05-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32613	facultative anaerobe
125439	obligate aerobe	95.3

Spore formation

@ref	Spore formation	Confidence
32613
125439		94.9
125438		93.183

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32613	NaCl	positive	growth	7 %
32613	NaCl	positive	optimum	7 %

Observation

32613

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32613	30089 ChEBI	acetate	+	carbon source
32613	40585 ChEBI	alpha-cyclodextrin	+	carbon source
32613	22599 ChEBI	arabinose	+	carbon source
32613	17057 ChEBI	cellobiose	+	carbon source
32613	23652 ChEBI	dextrin	+	carbon source
32613	28757 ChEBI	fructose	+	carbon source
32613	33984 ChEBI	fucose	+	carbon source
32613	24265 ChEBI	gluconate	+	carbon source
32613	17754 ChEBI	glycerol	+	carbon source
32613	17306 ChEBI	maltose	+	carbon source
32613	37684 ChEBI	mannose	+	carbon source
32613	37657 ChEBI	methyl D-glucoside	+	carbon source
32613	506227 ChEBI	N-acetylglucosamine	+	carbon source
32613	16634 ChEBI	raffinose	+	carbon source
32613	33942 ChEBI	ribose	+	carbon source
32613	17814 ChEBI	salicin	+	carbon source
32613	30911 ChEBI	sorbitol	+	carbon source
32613	17992 ChEBI	sucrose	+	carbon source
32613	27082 ChEBI	trehalose	+	carbon source
32613	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32613	acid phosphatase	+	3.1.3.2
32613	alkaline phosphatase	+	3.1.3.1
32613	catalase	+	1.11.1.6
32613	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8400	soil	Taichung City	Taiwan, Province of China	TWN	Asia
123415	Environment, Soil	Taichung	Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU179327 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	208
Soil Samples	1643
Animal Samples	410
Plant Samples	609
Total Samples	2870

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8400	1	Risk group (German classification) According to TRBA 466
123415	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1335990v1 assembly for Paenibacillus taichungensis DSM 19942	contig	GCA_013359905	484184.9	8110794276	484184	54.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8400	Paenibacillus taichungensis strain BCRC 17757 16S ribosomal RNA gene, partial sequence	EU179327	1495		484184
124043	Paenibacillus taichungensis strain BCRC 17757 16S ribosomal RNA gene, partial sequence.	KX583026	777		484184

GC content

@ref	GC-content (mol%)	Method
8400	46.7	high performance liquid chromatography (HPLC)
32613	46.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus taichungensis DSM 19942
NCBI: GCA_013359905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	94.90	no
125439	motility	BacteriaNetⓘ	yes	91.90	no
125439	gram_stain	BacteriaNetⓘ	variable	85.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus taichungensis strain DSM 19942
PATRIC: 484184.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.30	yes
125438	anaerobic	anaerobicⓘ	no	90.62	yes
125438	spore-forming	spore-formingⓘ	yes	93.18	no
125438	aerobic	aerobicⓘ	no	52.45	no
125438	thermophilic	thermophileⓘ	no	93.92	no
125438	flagellated	motile2+ⓘ	yes	86.34	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Whole-Genome Sequence of Paenibacillus marchantiae Isolated from the Liverwort Marchantia polymorpha subsp. ruderalis Ecotype BoGa.	Meierhenrich A, Frommer B, Halpape W, Hildebrandt M, Bleile IE, Helmig J, Zachgo S, Brautigam A, Verwaaijen B.	Microbiol Resour Announc	10.1128/mra.00354-23	2023
	As(III) Exposure Induces a Zinc Scarcity Response and Restricts Iron Uptake in High-Level Arsenic-Resistant Paenibacillus taichungensis Strain NC1.	Yu Y, Su J, Xu J, Li YP, Alwathnani HA, Wu Z, Ji C, Feng R, Rensing C, Herzberg M.	Appl Environ Microbiol	10.1128/aem.00312-22	2022
Phylogeny	Characterization of bacterial communities associated with the exotic and heavy metal tolerant wetland plant Spartina alterniflora.	Yang Y, Ding J, Chi Y, Yuan J.	Sci Rep	10.1038/s41598-020-75041-5	2020
	Production, purification, and process optimization of intracellular pigment from novel psychrotolerant Paenibacillus sp. BPW19.	Padhan B, Poddar K, Sarkar D, Sarkar A.	Biotechnol Rep (Amst)	10.1016/j.btre.2021.e00592	2021
Phylogeny	Novel and unexpected bacterial diversity in an arsenic-rich ecosystem revealed by culture-dependent approaches.	Delavat F, Lett MC, Lievremont D.	Biol Direct	10.1186/1745-6150-7-28	2012
Phylogeny	Paenibacillus xylanivorans sp. nov., a xylan-degrading bacterium isolated from decaying forest soil.	Ghio S, Sauka DH, Ferrari AE, Piccini FE, Ontanon OM, Campos E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003686	2019
Phylogeny	Paenibacillus dongdonensis sp. nov., isolated from rhizospheric soil of Elymus tsukushiensis.	Son JS, Kang HU, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijs.0.061077-0	2014
Phylogeny	Paenibacillus taichungensis sp. nov., from soil in Taiwan.	Lee FL, Tien CJ, Tai CJ, Wang LT, Liu YC, Chern LL	Int J Syst Evol Microbiol	10.1099/ijs.0.65776-0	2008

References

#8400	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19942
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28826	IJSEM 2640 2008 ( DOI 10.1099/ijs.0.65776-0 , PubMed 18984707 )
#32613	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28826
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123415	Collection of Institut Pasteur ; Curators of the CIP; CIP 110615
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus taichungensis (DSM 19942, BCRC 17757, CIP 110615)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013359905

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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