Name: Paenibacillus fonticola ZL
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11625

Type strain:

Species: Paenibacillus fonticola

Strain Designation: ZL

Culture col. no.: DSM 21315, BCRC 17579, LMG 23577, CIP 110593, KCTC 13624

Strain history: CIP <- 2013, LMG <- 2006, W.M. Chen, Nat. Kaohsiung Marine Univ., Taiwan, China: strain ZL

NCBI tax ID(s): 1122918 (strain), 379896 (species)

SI-ID 290797

LMG 23577, BCRC 17579, CCRC 17579, KCTC 13624, CIP 110593, DSM 21315

Section

Paenibacillus fonticola ZL is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from warm spring, water.

Gram-variable
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus fonticola**
	Full Scientific Name (LPSN)	Paenibacillus fonticola Chou et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32045]	Gram stain	variable
[Ref.: #119419]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32045]	Cell length	2.0-12.4 µm

[Ref.: #32045]	Cell width	0.8-1 µm

[Ref.: #32045]	Cell shape	rod-shaped
[Ref.: #119419]	Cell shape	rod-shaped

[Ref.: #32045]	Motility	yes
[Ref.: #119419]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.922

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15505]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #15505]

Culture medium growth

[Ref.: #15505]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15505]

Culture medium composition

expand / minimize

[Ref.: #33580]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33580]

Culture medium growth

[Ref.: #33580]

Culture medium composition

expand / minimize

[Ref.: #119419]

Culture medium

CIP Medium 72

[Ref.: #119419]

Culture medium growth

[Ref.: #119419]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15505]	growth	30 °C
[Ref.: #32045]	growth	20-45 °C
[Ref.: #32045]	optimum	32.5 °C
[Ref.: #33580]	growth	30 °C

[Ref.: #15505]	Temperature range	mesophilic
[Ref.: #32045]	Temperature range	mesophilic
[Ref.: #33580]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32045]			optimum	8.5
[Ref.: #32045]			growth	07-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32045]

Oxygen tolerance

facultative anaerobe

[Ref.: #32045]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32045]	arabinose ChEBI	+	carbon source
[Ref.: #32045]	cellobiose ChEBI	+	carbon source
[Ref.: #32045]	citrate ChEBI	+	carbon source
[Ref.: #32045]	dextrin ChEBI	+	carbon source
[Ref.: #32045]	esculin ChEBI	+	hydrolysis
[Ref.: #32045]	glucose ChEBI	+	carbon source
[Ref.: #32045]	mannitol ChEBI	+	carbon source
[Ref.: #32045]	melibiose ChEBI	+	carbon source
[Ref.: #32045]	rhamnose ChEBI	+	carbon source
[Ref.: #32045]	sorbitol ChEBI	+	carbon source
[Ref.: #32045]	sucrose ChEBI	+	carbon source
[Ref.: #32045]	trehalose ChEBI	+	carbon source
[Ref.: #32045]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #32045]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32045]		catalase	+	1.11.1.6
[Ref.: #32045]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15505]	Sample type/isolated from	warm spring, water
[Ref.: #15505]	Country	Taiwan
[Ref.: #15505]	Country ISO 3 Code	TWN
[Ref.: #15505]	Continent	Asia

[Ref.: #119419]	Sample type/isolated from	Environment, Warm spring water
[Ref.: #119419]	Country	Taiwan
[Ref.: #119419]	Country ISO 3 Code	TWN
[Ref.: #119419]	Continent	Asia
[Ref.: #119419]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Thermal spring

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ453131 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	6
Soil Samples	28
Animal Samples	13
Plant Samples	2
Total Samples	49

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15505]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119419]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15505]	Paenibacillus fonticola strain ZL 16S ribosomal RNA gene, partial sequence	DQ453131	1464	ENA	379896 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus fonticola DSM 21315	GCA_000381905	scaffold	GenBank	1122918 tax ID	*
[Ref.: #66792]	Paenibacillus fonticola DSM 21315	1122918.3	wgs	PATRIC	1122918 tax ID	*
[Ref.: #66792]	Paenibacillus fonticola DSM 21315	2519899635	draft	JGI IMG/M	1122918 tax ID	*

[Ref.: #15505]

GC-content

49.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus fonticola DSM 21315 DSM 21315 NCBI: GCA_000381905.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus fonticola DSM 21315 DSM 21315 NCBI: GCA_000381905.1
[Ref.: #69480]	motile	yes	89.568	yes
[Ref.: #69480]	flagellated	yes	75.036	no
[Ref.: #69480]	gram-positive	yes	84.408	no
[Ref.: #69480]	anaerobic	no	97.291	yes
[Ref.: #69480]	aerobic	yes	62.094	yes
[Ref.: #69480]	halophile	no	85.952	no
[Ref.: #69480]	spore-forming	yes	94.676	yes
[Ref.: #69480]	thermophile	no	99.281	yes
[Ref.: #69480]	glucose-util	yes	86.86	no
[Ref.: #69480]	glucose-ferment	no	78.895	no

Availability in culture collections External links

[Ref.: #15505]

Culture collection no.

DSM 21315, BCRC 17579, LMG 23577, CIP 110593, KCTC 13624

[Ref.: #80850]

SI-ID 290797

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus fonticola sp. nov., isolated from a warm spring.	Chou JH, Chou YJ, Lin KY, Sheu SY, Sheu DS, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.64872-0	2007	*

References

#15505

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21315

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32045

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28295 (see below)

#33580 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80850

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290797.1 )

#119419 Collection of Institut Pasteur ; Curators of the CIP; CIP 110593

#28295

IJSEM 1346 2007 ( DOI 10.1099/ijs.0.64872-0 , PubMed 17551056 )

* These data were automatically processed and therefore are not curated

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Paenibacillus fonticola DSM 21315 DSM 21315

Paenibacillus fonticola DSM 21315 DSM 21315

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