Paenibacillus terrigena (DSM 21567, CCTCC AB 206026, IAM 15291)

Name: Paenibacillus terrigena (DSM 21567, CCTCC AB 206026, IAM 15291)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11622

Type strain

Strain Designation A35

Culture col. no. DSM 21567 CCTCC AB 206026 IAM 15291 JCM 21741 A35 1 more

NCBI tax ID(s) 1122927 369333

Special Collections DSMZ JCM Literature strains CIP

History <- JCM <- IAM <- C.-H. Xie; A35 2007, IAM IAM 15291 <-- C.-H. Xie A35. CIP <- 2007, IAM

Links

Paenibacillus terrigena A35 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297291

DSM 21567,IAM 15291,JCM 21741,LMG 24753,CIP 109482

@ref 20215

Last LPSN update 2026-02-09 11:20:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus terrigena

Full scientific name Paenibacillus terrigena Xie and Yokota 2007

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
31800	positive	rod-shaped
123477	positive	rod-shaped

Pigmentation

31800

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15666	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
15666	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
37312	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123477	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
15666	positive	growth	30
31800	positive	growth	04-32
31800	positive	optimum	18
37312	positive	growth	25
67770	positive	growth	27

Culture pH

@ref	Ability	Type	PH	PH range
31800	positive	optimum	7
31800	positive	growth	04-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31800	facultative anaerobe
123477	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
31800
125438		94.001
125439		92.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31800	NaCl	positive	growth	0-3.5 %
31800	NaCl	positive	optimum	1.75 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31800	17057 ChEBI	cellobiose	+	carbon source
31800	4853 ChEBI	esculin	+	hydrolysis
31800	28260 ChEBI	galactose	+	carbon source
31800	24265 ChEBI	gluconate	+	carbon source
31800	17234 ChEBI	glucose	+	carbon source
31800	17754 ChEBI	glycerol	+	carbon source
31800	17716 ChEBI	lactose	+	carbon source
31800	17306 ChEBI	maltose	+	carbon source
31800	28053 ChEBI	melibiose	+	carbon source
31800	37657 ChEBI	methyl D-glucoside	+	carbon source
31800	506227 ChEBI	N-acetylglucosamine	+	carbon source
31800	17632 ChEBI	nitrate	+	reduction
123477	17632 ChEBI	nitrate	+	reduction
123477	16301 ChEBI	nitrite	-	reduction
31800	16634 ChEBI	raffinose	+	carbon source
31800	33942 ChEBI	ribose	+	carbon source
31800	17814 ChEBI	salicin	+	carbon source
31800	17992 ChEBI	sucrose	+	carbon source
31800	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123477	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31800	catalase	+	1.11.1.6
123477	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31800	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123477	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
123477	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123477	-	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15666	soil	Chiba seacoast	Japan	JPN	Asia
67770	Soil	Chiba seacoast	Japan	JPN	Asia
123477	Environment, Soil	Chiba	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB248087 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	8
Soil Samples	324
Animal Samples	10
Plant Samples	17
Total Samples	359

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15666	1	Risk group (German classification) According to TRBA 466
123477	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM37484v1 assembly for Paenibacillus terrigena DSM 21567	scaffold	GCA_000374845	1122927.3	2517572151	1122927	71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15666	Paenibacillus terrigena gene for 16S rRNA, partial sequence	AB248087	1487		369333

GC content

@ref	GC-content (mol%)	Method
15666	48.1	high performance liquid chromatography (HPLC)
31800	54

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus terrigena DSM 21567
NCBI: GCA_000374845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.40	no
125439	gram_stain	BacteriaNetⓘ	variable	78.80	no
125439	motility	BacteriaNetⓘ	yes	89.20	no
125439	spore_formation	BacteriaNetⓘ	yes	92.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus terrigena DSM 21567
PATRIC: 1122927.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.12	no
125438	anaerobic	anaerobicⓘ	no	95.72	yes
125438	spore-forming	spore-formingⓘ	yes	94.00	yes
125438	aerobic	aerobicⓘ	yes	56.18	no
125438	thermophilic	thermophileⓘ	no	94.86	yes
125438	flagellated	motile2+ⓘ	yes	82.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Arsinothricin, an arsenic-containing non-proteinogenic amino acid analog of glutamate, is a broad-spectrum antibiotic.	Nadar VS, Chen J, Dheeman DS, Galvan AE, Yoshinaga-Sakurai K, Kandavelu P, Sankaran B, Kuramata M, Ishikawa S, Rosen BP, Yoshinaga M, Yoshinaga M.	Commun Biol	10.1038/s42003-019-0365-y	2019
	Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India.	Krishnan R, Menon RR, Tanaka N, Busse HJ, Krishnamurthi S, Rameshkumar N.	PLoS One	10.1371/journal.pone.0150322	2016
	Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres.	Li Q, Li Y, Liu X, Chen S.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01677-6	2022
Phylogeny	Arthrobacter silvisoli sp. nov., isolated from forest soil.	Yan R, Fu Y, Liu D, Jiang S, Ju H, Guo X, Guo X, Wang X, Zhang J, Xiang W.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003085	2018
Phylogeny	Paenibacillus zanthoxyli sp. nov., a novel nitrogen-fixing species isolated from the rhizosphere of Zanthoxylum simulans.	Ma Y, Zhang J, Chen S.	Int J Syst Evol Microbiol	10.1099/ijs.0.64652-0	2007
Phylogeny	Paenibacillus guangzhouensis sp. nov., an Fe(III)- and humus-reducing bacterium from a forest soil.	Li J, Lu Q, Liu T, Zhou S, Yang G, Zhao Y	Int J Syst Evol Microbiol	10.1099/ijs.0.067173-0	2014
Phylogeny	Paenibacillus selenitireducens sp. nov., a selenite-reducing bacterium isolated from a selenium mineral soil.	Yao R, Wang R, Wang D, Su J, Zheng S, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.057042-0	2013
Phylogeny	Paenibacillus terrigena sp. nov., isolated from soil.	Xie CH, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64311-0	2007

References

#15666	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21567
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28070	IJSEM 70 2007 ( DOI 10.1099/ijs.0.64311-0 , PubMed 17220444 )
#31800	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28070
#37312	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123477	Collection of Institut Pasteur ; Curators of the CIP; CIP 109482
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus terrigena (DSM 21567, CCTCC AB 206026, IAM 15291)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000374845

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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