Name: Paenibacillus terrigena A35
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11622

Type strain:

Species: Paenibacillus terrigena

Strain Designation: A35

Culture col. no.: DSM 21567, CCTCC AB 206026, IAM 15291, JCM 21741, CIP 109482

Strain history: CIP <- 2007, IAM

NCBI tax ID(s): 1122927 (strain), 369333 (species)

SI-ID 297291

IAM 15291, JCM 21741, LMG 24753, CIP 109482

Section

Paenibacillus terrigena A35 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus terrigena**
	Full Scientific Name (LPSN)	Paenibacillus terrigena Xie and Yokota 2007

Information on morphological and physiological properties Morphology

[Ref.: #31800]	Gram stain	positive
[Ref.: #123477]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31800]	Cell shape	rod-shaped
[Ref.: #123477]	Cell shape	rod-shaped

[Ref.: #31800]	Motility	yes
[Ref.: #123477]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.707

[Ref.: #31800]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15666]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #15666]

Culture medium growth

[Ref.: #15666]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15666]

Culture medium composition

expand / minimize

[Ref.: #15666]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #15666]

Culture medium growth

[Ref.: #15666]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15666]

Culture medium composition

expand / minimize

[Ref.: #37312]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37312]

Culture medium growth

[Ref.: #37312]

Culture medium composition

expand / minimize

[Ref.: #123477]

Culture medium

CIP Medium 72

[Ref.: #123477]

Culture medium growth

[Ref.: #123477]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15666]	growth	30 °C
[Ref.: #31800]	growth	04-32 °C
[Ref.: #31800]	optimum	18 °C
[Ref.: #37312]	growth	25 °C
[Ref.: #67770]	growth	27 °C

[Ref.: #15666]	Temperature range	mesophilic
[Ref.: #31800]	Temperature range	psychrophilic
[Ref.: #37312]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31800]			optimum	7
[Ref.: #31800]			growth	04-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31800]	Oxygen tolerance	facultative anaerobe
[Ref.: #123477]	Oxygen tolerance	obligate aerobe

[Ref.: #31800]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31800]		NaCl		growth	0-3.5	%
[Ref.: #31800]		NaCl		optimum	1.75	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31800]	cellobiose ChEBI	+	carbon source
[Ref.: #31800]	esculin ChEBI	+	hydrolysis
[Ref.: #31800]	galactose ChEBI	+	carbon source
[Ref.: #31800]	gluconate ChEBI	+	carbon source
[Ref.: #31800]	glucose ChEBI	+	carbon source
[Ref.: #31800]	glycerol ChEBI	+	carbon source
[Ref.: #31800]	lactose ChEBI	+	carbon source
[Ref.: #31800]	maltose ChEBI	+	carbon source
[Ref.: #31800]	melibiose ChEBI	+	carbon source
[Ref.: #31800]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #31800]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31800]	nitrate ChEBI	+	reduction
[Ref.: #123477]	nitrate ChEBI	+	reduction
[Ref.: #123477]	nitrite ChEBI	-	reduction
[Ref.: #31800]	raffinose ChEBI	+	carbon source
[Ref.: #31800]	ribose ChEBI	+	carbon source
[Ref.: #31800]	salicin ChEBI	+	carbon source
[Ref.: #31800]	sucrose ChEBI	+	carbon source
[Ref.: #31800]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123477]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31800]	catalase	+	1.11.1.6
[Ref.: #123477]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31800]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123477]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123477]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123477]	11896	-	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15666]	Sample type/isolated from	soil
[Ref.: #15666]	Geographic location (country and/or sea, region)	Chiba seacoast
[Ref.: #15666]	Country	Japan
[Ref.: #15666]	Country ISO 3 Code	JPN
[Ref.: #15666]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chiba seacoast
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #123477]	Sample type/isolated from	Environment, Soil
[Ref.: #123477]	Geographic location (country and/or sea, region)	Chiba
[Ref.: #123477]	Country	Japan
[Ref.: #123477]	Country ISO 3 Code	JPN
[Ref.: #123477]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB248087 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	8
Soil Samples	324
Animal Samples	10
Plant Samples	17
Total Samples	359

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15666]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123477]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15666]	Paenibacillus terrigena gene for 16S rRNA, partial sequence	AB248087	1487	ENA	369333 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus terrigena DSM 21567	GCA_000374845	scaffold	GenBank	1122927 tax ID
[Ref.: #66792]	Paenibacillus terrigena DSM 21567	1122927.3	wgs	PATRIC	1122927 tax ID	*
[Ref.: #66792]	Paenibacillus terrigena DSM 21567	2517572151	draft	JGI IMG/M	1122927 tax ID	*

[Ref.: #15666]	GC-content	48.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31800]	GC-content	54 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus terrigena DSM 21567 DSM 21567 NCBI: GCA_000374845.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus terrigena DSM 21567 PATRIC: 1122927.3
[Ref.: #69480]	motile	yes	89.688	yes
[Ref.: #69480]	flagellated	yes	76.614	no
[Ref.: #69480]	gram-positive	yes	88.278	yes
[Ref.: #69480]	anaerobic	no	98.385	yes
[Ref.: #69480]	aerobic	yes	68.74	no
[Ref.: #69480]	halophile	no	95.228	no
[Ref.: #69480]	spore-forming	yes	96.416	no
[Ref.: #69480]	glucose-util	yes	88.716	yes
[Ref.: #69480]	thermophile	no	99.683	yes
[Ref.: #69480]	glucose-ferment	no	85.158	no

Availability in culture collections External links

[Ref.: #15666]

Culture collection no.

DSM 21567, CCTCC AB 206026, IAM 15291, JCM 21741, CIP 109482

[Ref.: #80848]

SI-ID 297291

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus guangzhouensis sp. nov., an Fe(III)- and humus-reducing bacterium from a forest soil.	Li J, Lu Q, Liu T, Zhou S, Yang G, Zhao Y	Int J Syst Evol Microbiol	10.1099/ijs.0.067173-0	2014	*
Phylogeny	Paenibacillus selenitireducens sp. nov., a selenite-reducing bacterium isolated from a selenium mineral soil.	Yao R, Wang R, Wang D, Su J, Zheng S, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.057042-0	2013	*
Phylogeny	Paenibacillus terrigena sp. nov., isolated from soil.	Xie CH, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64311-0	2007	*

References

#15666

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21567

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31800

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28070 (see below)

#37312 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80848

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297291.1 )

#123477 Collection of Institut Pasteur ; Curators of the CIP; CIP 109482

#28070

IJSEM 70 2007 ( DOI 10.1099/ijs.0.64311-0 , PubMed 17220444 )

* These data were automatically processed and therefore are not curated

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Paenibacillus terrigena DSM 21567 DSM 21567

Paenibacillus terrigena DSM 21567

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