Name: Paenibacillus humicus PC-147
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11616

Type strain:

Species: Paenibacillus humicus

Strain Designation: PC-147

Culture col. no.: DSM 18784, CIP 110609, LMG 23886, NBRC 102415, NRBC 102415

Strain history: CIP <- 2013, DSM <- C. Manaia, Univ. Portugal, Porto, Portugal <- I. Vaz-Moreia strain: PC-147

NCBI tax ID(s): 1349778 (strain), 412861 (species)

SI-ID 293010

LMG 23886, DSM 18784, NBRC 102415, CIP 110609

Other strains from Paenibacillus humicus

P. humicus ES2-W12c2, DSM 30655
P. humicus W5/8, DSM 30777
P. humicus D14_2, DSM 103748
P. humicus CCUG 72318

Section

Paenibacillus humicus PC-147 is an aerobe, spore-forming, thermophilic bacterium that was isolated from poultry litter compost.

Gram-negative
motile
rod-shaped
spore-forming
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus humicus**
	Full Scientific Name (LPSN)	Paenibacillus humicus Vaz-Moreira et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32205]	Gram stain	negative
[Ref.: #119986]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32205]	Cell length	2 µm

[Ref.: #32205]	Cell width	0.5 µm

[Ref.: #32205]	Cell shape	rod-shaped
[Ref.: #119986]	Cell shape	rod-shaped

[Ref.: #32205]	Motility	yes
[Ref.: #119986]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.566

[Ref.: #32205]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7695]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #7695]

Culture medium growth

[Ref.: #7695]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7695]

Culture medium composition

expand / minimize

[Ref.: #119986]

Culture medium

CIP Medium 29

[Ref.: #119986]

Culture medium growth

[Ref.: #119986]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7695]	growth	40 °C
[Ref.: #32205]	growth	15-40 °C
[Ref.: #32205]	optimum	27.5 °C

[Ref.: #7695]	Temperature range	thermophilic
[Ref.: #32205]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32205]			optimum	7.75
[Ref.: #32205]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32205]

Oxygen tolerance

aerobe

[Ref.: #32205]	Ability of spore formation	yes
[Ref.: #119986]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32205]		NaCl		growth	02-04	%
[Ref.: #32205]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32205]	cellobiose ChEBI	+	carbon source
[Ref.: #32205]	esculin ChEBI	+	hydrolysis
[Ref.: #32205]	fructose ChEBI	+	carbon source
[Ref.: #32205]	galactose ChEBI	+	carbon source
[Ref.: #32205]	glucose ChEBI	+	carbon source
[Ref.: #32205]	glycogen ChEBI	+	carbon source
[Ref.: #32205]	lactose ChEBI	+	carbon source
[Ref.: #32205]	maltose ChEBI	+	carbon source
[Ref.: #32205]	mannitol ChEBI	+	carbon source
[Ref.: #32205]	melibiose ChEBI	+	carbon source
[Ref.: #32205]	raffinose ChEBI	+	carbon source
[Ref.: #32205]	salicin ChEBI	+	carbon source
[Ref.: #32205]	sucrose ChEBI	+	carbon source
[Ref.: #32205]	trehalose ChEBI	+	carbon source
[Ref.: #32205]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32205]	catalase	+	1.11.1.6
[Ref.: #32205]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32205]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7695]	Sample type/isolated from	poultry litter compost
[Ref.: #7695]	Geographic location (country and/or sea, region)	Porto
[Ref.: #7695]	Country	Portugal
[Ref.: #7695]	Country ISO 3 Code	PRT
[Ref.: #7695]	Continent	Europe

[Ref.: #119986]	Sample type/isolated from	Environment, 2007, Poultry litter compost
[Ref.: #119986]	Geographic location (country and/or sea, region)	Porto
[Ref.: #119986]	Country	Portugal
[Ref.: #119986]	Country ISO 3 Code	PRT
[Ref.: #119986]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Waste	-
#Host	#Birds	-
#Host	#Other	#Decomposing animal

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM411528 (>99% sequence identity) for Paenibacillus humicus subclade from Microbeatlas

Aquatic Samples	710
Soil Samples	2649
Animal Samples	1422
Plant Samples	488
Total Samples	5269

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7695]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119986]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7695]	Paenibacillus humicus partial 16S rRNA gene, type strain PC-147T	AM411528	1503	ENA	412861 tax ID
[Ref.: #20218]	Paenibacillus humicus gene for 16S rRNA, partial sequence, strain: NBRC 102415	AB681771	1471	ENA	412861 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus humicus NBRC 102415	GCA_004000905	contig	GenBank	1349778 tax ID	*
[Ref.: #66792]	Paenibacillus humicus NBRC 102415	1349778.3	wgs	PATRIC	1349778 tax ID	*

[Ref.: #7695]

GC-content

58 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus humicus NBRC 102415 PATRIC: 1349778.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus humicus NBRC 102415 PATRIC: 1349778.3
[Ref.: #69480]	motile	yes	85.462	no
[Ref.: #69480]	gram-positive	yes	75.814	yes
[Ref.: #69480]	anaerobic	no	99.088	yes
[Ref.: #69480]	halophile	no	89.86	no
[Ref.: #69480]	spore-forming	yes	94.253	yes
[Ref.: #69480]	glucose-util	yes	89.039	yes
[Ref.: #69480]	flagellated	yes	82.247	no
[Ref.: #69480]	thermophile	no	99.645	no
[Ref.: #69480]	aerobic	yes	94.006	yes
[Ref.: #69480]	glucose-ferment	no	91.484	no

Availability in culture collections External links

[Ref.: #7695]

Culture collection no.

DSM 18784, CIP 110609, LMG 23886, NBRC 102415, NRBC 102415

[Ref.: #80842]

SI-ID 293010

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus albicereus sp. nov. and Niallia alba sp. nov., isolated from digestive syrup.	Thorat V, Kirdat K, Tiwarekar B, Dhanavade P, Karodi P, Shouche Y, Sathe S, Lodha T, Yadav A	Arch Microbiol	10.1007/s00203-021-02749-x	2022	*
Phylogeny	Paenibacillus herberti sp. nov., an endophyte isolated from Herbertus sendtneri.	Guo GN, Zhou X, Zhao R, Chen XY, Chen ZL, Li XD, Li YH	Antonie Van Leeuwenhoek	10.1007/s10482-015-0514-3	2015	*
Phylogeny	Paenibacillus wooponensis sp. nov., isolated from wetland freshwater.	Baik KS, Choe HN, Park SC, Kim EM, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.028308-0	2011	*
Phylogeny	Paenibacillus humicus sp. nov., isolated from poultry litter compost.	Vaz-Moreira I, Faria C, Nobre MF, Schumann P, Nunes OC, Manaia CM	Int J Syst Evol Microbiol	10.1099/ijs.0.65124-0	2007	*

References

#7695

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18784

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32205

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28447 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80842

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293010.1 )

#119986 Collection of Institut Pasteur ; Curators of the CIP; CIP 110609

#28447

IJSEM 2267 2007 ( DOI 10.1099/ijs.0.65124-0 , PubMed 17911294 )

* These data were automatically processed and therefore are not curated

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Paenibacillus humicus NBRC 102415

Paenibacillus humicus NBRC 102415

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