Paenibacillus motobuensis (DSM 18200, CCUG 50090, GTC 1835)

Name: Paenibacillus motobuensis (DSM 18200, CCUG 50090, GTC 1835)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11598

Type strain

Strain Designation MC10

Culture col. no. DSM 18200 CCUG 50090 GTC 1835 JCM 12774 CIP 108936 2 more

NCBI tax ID(s) 295324

Special Collections DSMZ CCUG JCM KCTC CIP Literature strains

History <- JCM <- K. Iida; MC10 K. Iida MC10. CIP <- 2005, CCUG <- 2004, K.I. Ida, Kyushu Univ., Fukuoka, Japan: strain MC10

Links

Paenibacillus motobuensis MC10 is a facultative anaerobe, spore-forming, mesophilic prokaryote that was isolated from soil containing composting machine.

spore-forming Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 265611

CCUG 50090,JCM 12774,DSM 18200,CIP 108936,KCTC 3992

@ref 20215

Last LPSN update 2026-02-09 11:20:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus motobuensis

Full scientific name Paenibacillus motobuensis Iida et al. 2005

BacDive ID	Other strains from **Paenibacillus motobuensis** (1)	Type strain
156090	P. motobuensis CCUG 60350

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31474	negative	2 µm	0.8 µm	rod-shaped
121149	positive			rod-shaped

Colony morphology

121149

Hemolysis ability1

Pigmentation

31474

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7424	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
33269	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121149	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7424	positive	growth	30	mesophilic
31474	positive	growth	20-55
31474	positive	optimum	37	mesophilic
33269	positive	growth	30	mesophilic
58738	positive	growth	30-37	mesophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH
31474	positive	optimum	8
31474	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31474	facultative anaerobe
58738	aerobe
121149	facultative anaerobe

Spore formation

31474

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31474	NaCl	positive	growth	05-09 %
31474	NaCl	positive	optimum	7 %

Observation

31474

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31474	62064 ChEBI	2,3-butanediol	+	carbon source
31474	17057 ChEBI	cellobiose	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
31474	23652 ChEBI	dextrin	+	carbon source
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
31474	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31474	28260 ChEBI	galactose	+	carbon source
31474	24265 ChEBI	gluconate	+	carbon source
31474	17234 ChEBI	glucose	+	carbon source
31474	17754 ChEBI	glycerol	+	carbon source
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31474	17306 ChEBI	maltose	+	carbon source
31474	37684 ChEBI	mannose	+	carbon source
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
31474	51850 ChEBI	methyl pyruvate	+	carbon source
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31474	17632 ChEBI	nitrate	+	reduction
121149	17632 ChEBI	nitrate	-	reduction
121149	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31474	17814 ChEBI	salicin	+	carbon source
31474	17992 ChEBI	sucrose	+	carbon source
31474	27082 ChEBI	trehalose	+	carbon source
31474	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121149	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121149	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
31474	catalase	+	1.11.1.6
121149	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31474	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
121149	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121149	ornithine decarboxylase	-	4.1.1.17
121149	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
121149	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121149	-	+	+	-	-	+	-	-	-	-	+	+	+	+	+	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121149	not determinedn.d.	+/-	-	-	+/-	+/-	+/-	-	-	+/-	+/-	+/-	+/-	+/-	-	-	-	-	+/-	+/-	-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	-	-	-	+/-	-	-	+/-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting
#Engineered	#Industrial	#Machines and devices
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7424	soil containing composting machine		Okinawa, Motobu	Japan	JPN	Asia
58738	Soil	2001-04-01	Okinawa,Motobu-town	Japan	JPN	Asia
67770	Compost produced in a composting machine utilizing soil from Motobu-town		Okinawa	Japan	JPN	Asia
121149	Environment, Soil		Motobu, Okinawa	Japan	JPN	Asia	2001

Taxonmaps

69479

Global distribution of 16S sequence AY741810 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	27
Soil Samples	237
Animal Samples	165
Plant Samples	128
Total Samples	557

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7424	1	Risk group (German classification) According to TRBA 466
121149	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267922v1 assembly for Paenibacillus motobuensis CCUG 50090	contig	GCA_042679225	295324	69.66
124043	ASM3952186v1 assembly for Paenibacillus motobuensis JCM 12774	scaffold	GCA_039521865	295324	67.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7424	Paenibacillus motobuensis strain MC10 16S ribosomal RNA gene, partial sequence	AY741810	1481		295324

GC content

@ref	GC-content (mol%)	Method
7424	47.0
31474	47
67770	47	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus lutimineralis sp. nov., Isolated From Bentonite.	Cho ES, Cha IT, Seo DH, Nam YD, Roh SW, Kim JH, Seo MJ	Curr Microbiol	10.1007/s00284-019-01710-y	2019
Phylogeny	Paenibacillus vini sp. nov., isolated from alcohol fermentation pit mud in Sichuan Province, China.	Chen XR, Shao CB, Wang YW, He MX, Ma KD, Wang HM, Kong DL, Guo X, Zhou YQ, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-015-0438-y	2015
Phylogeny	Paenibacillus motobuensis sp. nov., isolated from a composting machine utilizing soil from Motobu-town, Okinawa, Japan.	Iida KI, Ueda Y, Kawamura Y, Ezaki T, Takade A, Yoshida SI, Amako K	Int J Syst Evol Microbiol	10.1099/ijs.0.63636-0	2005

References

#7424	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18200
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27774	IJSEM 1811 2005 ( DOI 10.1099/ijs.0.63636-0 , PubMed 16166671 )
#31474	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27774
#33269	; Curators of the CIP;
#58738	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50090
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121149	Collection of Institut Pasteur ; Curators of the CIP; CIP 108936
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus motobuensis (DSM 18200, CCUG 50090, GTC 1835)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042679225

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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