Name: Paenibacillus motobuensis MC10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11598

Type strain:

Species: Paenibacillus motobuensis

Strain Designation: MC10

Culture col. no.: DSM 18200, CCUG 50090, GTC 1835, JCM 12774, CIP 108936, KCTC 3992

Strain history: K. Iida MC10.

NCBI tax ID(s): 295324 (species)

Other strains from Paenibacillus motobuensis

P. motobuensis CCUG 60350

Section

Paenibacillus motobuensis MC10 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil containing composting machine.

Gram-negative
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus motobuensis**
	Full Scientific Name (PNU)	Paenibacillus motobuensis Iida et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31474]	Gram stain	negative
[Ref.: #31474]	Cell length	2 µm
[Ref.: #31474]	Cell width	0.8 µm
[Ref.: #31474]	Cell shape	rod-shaped
[Ref.: #31474]	Motility	yes

[Ref.: #31474]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7424]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #7424]

Culture medium growth

[Ref.: #7424]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7424]

Culture medium composition

expand / minimize

[Ref.: #33269]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33269]

Culture medium growth

[Ref.: #33269]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7424]	growth	30 °C
[Ref.: #31474]	growth	20-55 °C
[Ref.: #31474]	optimum	37 °C
[Ref.: #33269]	growth	30 °C
[Ref.: #58738]	growth	30-37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #7424]	Temperature range	mesophilic
[Ref.: #31474]	Temperature range	mesophilic
[Ref.: #33269]	Temperature range	mesophilic
[Ref.: #58738]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31474]			optimum	8
[Ref.: #31474]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31474]	Oxygen tolerance	facultative anaerobe
[Ref.: #58738]	Oxygen tolerance	aerobe

[Ref.: #31474]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31474]		NaCl		growth	05-09	%
[Ref.: #31474]		NaCl		optimum	7	%

[Ref.: #31474]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31474]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #31474]	cellobiose ChEBI	+	carbon source
[Ref.: #31474]	dextrin ChEBI	+	carbon source
[Ref.: #31474]	fructose ChEBI	+	carbon source
[Ref.: #31474]	galactose ChEBI	+	carbon source
[Ref.: #31474]	gluconate ChEBI	+	carbon source
[Ref.: #31474]	glucose ChEBI	+	carbon source
[Ref.: #31474]	glycerol ChEBI	+	carbon source
[Ref.: #31474]	maltose ChEBI	+	carbon source
[Ref.: #31474]	mannose ChEBI	+	carbon source
[Ref.: #31474]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31474]	nitrate ChEBI	+	reduction
[Ref.: #31474]	salicin ChEBI	+	carbon source
[Ref.: #31474]	sucrose ChEBI	+	carbon source
[Ref.: #31474]	trehalose ChEBI	+	carbon source
[Ref.: #31474]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31474]		catalase	+	1.11.1.6
[Ref.: #31474]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7424]	Sample type/isolated from	soil containing composting machine
[Ref.: #7424]	Geographic location (country and/or sea, region)	Okinawa, Motobu
[Ref.: #7424]	Country	Japan
[Ref.: #7424]	Country ISO 3 Code	JPN
[Ref.: #7424]	Continent	Asia

[Ref.: #58738]	Sample type/isolated from	Soil
[Ref.: #58738]	Sampling date	2001-04-01
[Ref.: #58738]	Geographic location (country and/or sea, region)	Okinawa,Motobu-town
[Ref.: #58738]	Country	Japan
[Ref.: #58738]	Country ISO 3 Code	JPN
[Ref.: #58738]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Compost produced in a composting machine utilizing soil from Motobu-town
[Ref.: #67770]	Geographic location (country and/or sea, region)	Okinawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Industrial	#Machines and devices
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY741810 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	27
Soil Samples	237
Animal Samples	165
Plant Samples	128
Total Samples	557

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7424]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7424]	Paenibacillus motobuensis strain MC10 16S ribosomal RNA gene, partial sequence	AY741810	1481	ENA	295324 tax ID

[Ref.: #7424]	GC-content	47.0 mol%
[Ref.: #31474]	GC-content	47 mol%
[Ref.: #67770]	GC-content	47 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7424]

Culture collection no.

DSM 18200, CCUG 50090, GTC 1835, JCM 12774, CIP 108936, KCTC 3992

[Ref.: #20218]

Associated Passport(s) in StrainInfo

691284, 621514, 621515, 621516

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus lutimineralis sp. nov., Isolated From Bentonite.	Cho ES, Cha IT, Seo DH, Nam YD, Roh SW, Kim JH, Seo MJ	Curr Microbiol	10.1007/s00284-019-01710-y	2019	*
Phylogeny	Paenibacillus vini sp. nov., isolated from alcohol fermentation pit mud in Sichuan Province, China.	Chen XR, Shao CB, Wang YW, He MX, Ma KD, Wang HM, Kong DL, Guo X, Zhou YQ, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-015-0438-y	2015	*
Phylogeny	Paenibacillus motobuensis sp. nov., isolated from a composting machine utilizing soil from Motobu-town, Okinawa, Japan.	Iida KI, Ueda Y, Kawamura Y, Ezaki T, Takade A, Yoshida SI, Amako K	Int J Syst Evol Microbiol	10.1099/ijs.0.63636-0	2005	*

References

#7424

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18200

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31474

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27774 (see below)

#33269 ; Curators of the CIP;
#58738 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50090
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27774

IJSEM 1811 2005 ( DOI 10.1099/ijs.0.63636-0 , PubMed 16166671 )

* These data were automatically processed and therefore are not curated

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