Name: Paenibacillus ehimensis EAG-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11513

Type strain:

Species: Paenibacillus ehimensis

Strain Designation: EAG-5

Culture col. no.: DSM 11029, IFO 15659, NBRC 15659, JCM 12161, CCM 4526, CIP 104913, KCTC 3748, LMG 18048, NRRL B-23118

Strain history: NBRC 15659 <-- IFO 15659 <-- R. Takata EAG-5.

NCBI tax ID(s): 1220562 (strain), 79264 (species)

Section

Paenibacillus ehimensis EAG-5 is a mesophilic bacterium that was isolated from garden soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus ehimensis**
	Full Scientific Name (PNU)	Paenibacillus ehimensis (Kuroshima et al. 1996) Lee et al. 2004

Synonym

Bacillus ehimensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4162]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4162]

Culture medium growth

[Ref.: #4162]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4162]

Culture medium composition

expand / minimize

[Ref.: #38522]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #38522]

Culture medium growth

[Ref.: #38522]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4162]	growth	30 °C
[Ref.: #38522]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #4162]	Temperature range	mesophilic
[Ref.: #38522]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4162]	Sample type/isolated from	garden soil
[Ref.: #4162]	Geographic location (country and/or sea, region)	Matsuyama, Ehime Prefecture
[Ref.: #4162]	Country	Japan
[Ref.: #4162]	Country ISO 3 Code	JPN
[Ref.: #4162]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Garden soil in Matsuyama
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ehime Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4162]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bacillus ehimensis gene for 16S ribosomal RNA	AB021184	1513	ENA	79264 tax ID	*
[Ref.: #20218]	Bacillus ehimensis strain KCTC3748 16S ribosomal RNA gene, partial sequence	AY116665	1452	ENA	79264 tax ID	*
[Ref.: #20218]	Paenibacillus ehimensis gene for 16S rRNA, partial sequence, strain: NBRC 15659	AB680937	1487	ENA	79264 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus ehimensis NBRC 15659	1220562.3	wgs	PATRIC	1220562 tax ID	*
[Ref.: #67770]	Paenibacillus ehimensis NBRC 15659 NBRC 15659	GCA_004000785	contig	GenBank	1220562 tax ID
[Ref.: #66792]	Enterococcus faecium EF215	GCA_019662185	contig	PATRIC	1352 tax ID	*

[Ref.: #4162]

GC-content

54.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #4162]

Culture collection no.

DSM 11029, IFO 15659, NBRC 15659, JCM 12161, CCM 4526, CIP 104913, KCTC 3748, LMG 18048, NRRL B-23118

[Ref.: #20218]

Associated Passport(s) in StrainInfo

41304, 41305, 489239

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Transfer of Bacillus ehimensis and Bacillus chitinolyticus to the genus Paenibacillus with emended descriptions of Paenibacillus ehimensis comb. nov. and Paenibacillus chitinolyticus comb. nov.	Lee JS, Pyun YR, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.02765-0	2004	*
Phylogeny	Paenibacillus elgii sp. nov., with broad antimicrobial activity.	Kim DS, Bae CY, Jeon JJ, Chun SJ, Oh HW, Hong SG, Baek KS, Moon EY, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.02414-0	2004	*
Enzymology	Purification and gene cloning of a chitosanase from Bacillus ehimensis EAG1.	Akiyama K, Fujita T, Kuroshima K, Sakane T, Yokota A, Takata R	J Biosci Bioeng	10.1016/s1389-1723(99)80050-4	1999	*
Phylogeny	Paenibacillus tianmuensis sp. nov., isolated from soil.	Wu X, Fang H, Qian C, Wen Y, Shen X, Li O, Gao H	Int J Syst Evol Microbiol	10.1099/ijs.0.024109-0	2010	*

References

#4162

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11029

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38522 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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