Heyndrickxia sporothermodurans (DSM 10599, LMG 17668, M 215)

Name: Heyndrickxia sporothermodurans (DSM 10599, LMG 17668, M 215)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1149

Type strain

Strain Designation M 215, MB581, MB 581

Culture col. no. DSM 10599 LMG 17668 M 215 MB581 CIP 104910 2 more

NCBI tax ID(s) 46224

Special Collections DSMZ Literature strains CIP

History <- Lembke, Tetrapak GmbH CIP <- 1996, F.G. Priest, Heriot Watt Univ., Edinburgh, Scotland, UK: strain M 215 <- F. Lembke

Links

Heyndrickxia sporothermodurans M 215 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from UHT-milk.

spore-forming Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10235

LMG 17668,DSM 10599,LMG 17894,CIP 104910,NCIMB 13600,CCM 4594,KCTC 3777,CBMAI 689,KACC 10906,BCRC 17415,CCRC 17415,VTT E-991264

@ref 20215

Last LPSN update 2026-02-09 11:18:02

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Heyndrickxia

Species Heyndrickxia sporothermodurans

Full scientific name Heyndrickxia sporothermodurans (Pettersson et al. 1996) Gupta et al. 2020

Synonyms (1)

Bacillus sporothermodurans

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
29921	positive	rod-shaped
123274	positive	rod-shaped

Pigmentation

29921

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3982	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
38662	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
123274	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3982	positive	growth	30
29921	positive	growth	20-55
29921	positive	optimum	37
38662	positive	growth	30
123274	positive	growth	22-45
123274	negative	growth	10
123274	negative	growth	55

Culture pH

@ref	Ability	Type	PH	PH range
29921	positive	growth	05-09	alkaliphile
123274	positive	growth	6

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29921	aerobe
123274	obligate aerobe
125439	obligate aerobe	96.6

Spore formation

@ref	Spore formation	Confidence
29921
123274
125438		92.504

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29921	NaCl	positive	growth	<5 %
123274	NaCl	positive	growth	0-4 %
123274	NaCl		growth	6 %
123274	NaCl		growth	8 %
123274	NaCl		growth	10 %

Observation

29921

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
29921	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
29921	4853 ChEBI	esculin	+	hydrolysis
123274	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
29921	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
29921	17234 ChEBI	glucose	+	carbon source
29921	17754 ChEBI	glycerol	+	carbon source
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
123274	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
29921	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
29921	29864 ChEBI	mannitol	+	carbon source
29921	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
29921	37657 ChEBI	methyl D-glucoside	+	carbon source
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
29921	17632 ChEBI	nitrate	+	reduction
123274	17632 ChEBI	nitrate	-	reduction
123274	17632 ChEBI	nitrate	-	respiration
123274	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
29921	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
29921	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
29921	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
29921	17151 ChEBI	xylitol	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123274	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123274	15688 ChEBI	acetoin	-
123274	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123274	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123274	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
123274	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123274	caseinase	-	3.4.21.50
29921	catalase	+	1.11.1.6
123274	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29921	cytochrome oxidase	+	1.9.3.1
123274	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123274	gamma-glutamyltransferase	-	2.3.2.2
29921	gelatinase	+
123274	gelatinase	-
123274	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
123274	lipase	-
68382	lipase (C 14)	-		from API zym
123274	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123274	ornithine decarboxylase	-	4.1.1.17
123274	oxidase	+
123274	phenylalanine ammonia-lyase	+	4.3.1.24
123274	protease	-
68382	trypsin	-	3.4.21.4	from API zym
123274	tween esterase	-
123274	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	propanol degradation	100	7 of 7
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	aspartate and asparagine metabolism	100	9 of 9
66794	threonine metabolism	100	10 of 10
66794	valine metabolism	100	9 of 9
66794	lipoate biosynthesis	100	5 of 5
66794	teichoic acid biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	propionate fermentation	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	phenylalanine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	glycine betaine biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	pyrimidine metabolism	80	36 of 45
66794	peptidoglycan biosynthesis	80	12 of 15
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	purine metabolism	79.79	75 of 94
66794	citric acid cycle	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	alanine metabolism	75.86	22 of 29
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	tryptophan metabolism	73.68	28 of 38
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	non-pathway related	68.42	26 of 38
66794	NAD metabolism	66.67	12 of 18
66794	enterobactin biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	heme metabolism	64.29	9 of 14
66794	isoleucine metabolism	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	3-chlorocatechol degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	Entner Doudoroff pathway	60	6 of 10
66794	hydrogen production	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	arginine metabolism	58.33	14 of 24
66794	oxidative phosphorylation	56.04	51 of 91
66794	cysteine metabolism	55.56	10 of 18
66794	d-xylose degradation	54.55	6 of 11
66794	proline metabolism	54.55	6 of 11
66794	quinate degradation	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	acetate fermentation	50	2 of 4
66794	biotin biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	vitamin B6 metabolism	45.45	5 of 11
66794	polyamine pathway	43.48	10 of 23
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	metabolism of disaccharids	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	degradation of pentoses	35.71	10 of 28
66794	phenol degradation	35	7 of 20
66794	octane oxidation	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	arachidonic acid metabolism	33.33	6 of 18
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	coenzyme M biosynthesis	30	3 of 10
66794	degradation of hexoses	27.78	5 of 18
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	degradation of sugar acids	24	6 of 25
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	allantoin degradation	22.22	2 of 9
66794	vitamin B12 metabolism	20.59	7 of 34

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123274	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123274	not determinedn.d.	+/-	-	-	-	+/-	-	-	-	-	-	+	+	-	-	-	-	-	+	+/-	-	-	-	-	+	+	+	+	+	-	-	+	+	-	-	-	+/-	-	-	-	+	-	+	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product
#Host Body Product	#Fluids	#Milk

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
3982	UHT-milk	Italy	ITA	Europe
123274	Food, Milk	Italy	ITA	Europe	1993

Taxonmaps

69479

Global distribution of 16S sequence U49078 (>99% sequence identity) for Bacillus sporothermodurans from Microbeatlas

Aquatic Samples	163
Soil Samples	172
Animal Samples	322
Plant Samples	64
Total Samples	721

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3982	1	Risk group (German classification) According to TRBA 466
123274	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1675669v1 assembly for Heyndrickxia sporothermodurans DSM 10599	chromosome	GCA_016756695	46224.121	8063947350	46224	89.05
66792	ASM1678518v1 assembly for Heyndrickxia sporothermodurans DSM 10599	contig	GCA_016785185	46224.153	8063960749	46224	18.93
66792	ASM1677131v1 assembly for Heyndrickxia sporothermodurans L1_154	contig	GCA_016771315	46224.131		46224	18.02
66792	ASM1677120v1 assembly for Heyndrickxia sporothermodurans L1_159	contig	GCA_016771205	46224.126	8063982353	46224	17.22
66792	ASM1677145v1 assembly for Heyndrickxia sporothermodurans L1_140	contig	GCA_016771455	46224.137	8063977917	46224	16.91
66792	ASM1677191v1 assembly for Heyndrickxia sporothermodurans L1_153	contig	GCA_016771915	46224.151	8075456186	46224	16.89
66792	ASM1677127v1 assembly for Heyndrickxia sporothermodurans L1_157	contig	GCA_016771275	46224.129	8063956656	46224	16.66
66792	ASM1677161v1 assembly for Heyndrickxia sporothermodurans M3420-12	contig	GCA_016771615	46224.145	8075415997	46224	16.27
66792	ASM1677175v1 assembly for Heyndrickxia sporothermodurans L1_152	contig	GCA_016771755	46224.149	8075407742	46224	16.17
66792	ASM1677141v1 assembly for Heyndrickxia sporothermodurans L1_143	contig	GCA_016771415	46224.136	8063986190	46224	15.86
66792	ASM1677129v1 assembly for Heyndrickxia sporothermodurans L1_150	contig	GCA_016771295	46224.130		46224	15.14
66792	ASM1677137v1 assembly for Heyndrickxia sporothermodurans L1_151	contig	GCA_016771375	46224.134	8063994273	46224	14.76
66792	ASM1677143v1 assembly for Heyndrickxia sporothermodurans L1_141	contig	GCA_016771435	46224.138		46224	14.74
66792	ASM1677123v1 assembly for Heyndrickxia sporothermodurans L1_158	contig	GCA_016771235	46224.127	8075452103	46224	14.19
66792	ASM1677124v1 assembly for Heyndrickxia sporothermodurans L1_155	contig	GCA_016771245	46224.128	8075420083	46224	13.98
66792	ASM1677115v1 assembly for Heyndrickxia sporothermodurans M5572-6	contig	GCA_016771155	46224.123		46224	13.7
66792	ASM1677134v1 assembly for Heyndrickxia sporothermodurans L1_145	contig	GCA_016771345	46224.132	8063973546	46224	13.68
66792	ASM1677153v1 assembly for Heyndrickxia sporothermodurans L1_142	contig	GCA_016771535	46224.142		46224	13.51
66792	ASM1677159v1 assembly for Heyndrickxia sporothermodurans M5311-2	contig	GCA_016771595	46224.148	8063938891	46224	12.61
66792	ASM1677119v1 assembly for Heyndrickxia sporothermodurans L1_160	contig	GCA_016771195	46224.125	8075439546	46224	12.2
66792	ASM1677117v1 assembly for Heyndrickxia sporothermodurans M5352-102	contig	GCA_016771175	46224.124	8063969555	46224	12.15
66792	ASM1677189v1 assembly for Heyndrickxia sporothermodurans L1_149	contig	GCA_016771895	46224.150	8063626139	46224	11.93
66792	ASM1677187v1 assembly for Heyndrickxia sporothermodurans L1_156	contig	GCA_016771875	46224.152	8063965157	46224	10.93
66792	ASM1677150v1 assembly for Heyndrickxia sporothermodurans M5530-17	contig	GCA_016771505	46224.141	8075447905	46224	10.79
66792	ASM1677139v1 assembly for Heyndrickxia sporothermodurans L1_144	contig	GCA_016771395	46224.135		46224	10.58
66792	ASM1677113v1 assembly for Heyndrickxia sporothermodurans L1_161	contig	GCA_016771135	46224.122	8063952499	46224	10.05
66792	ASM1677165v1 assembly for Heyndrickxia sporothermodurans M5311-1	contig	GCA_016771655	46224.147	8075411840	46224	10.03
66792	ASM1677154v1 assembly for Heyndrickxia sporothermodurans M5523-4	contig	GCA_016771545	46224.143		46224	9.8
66792	ASM1677149v1 assembly for Heyndrickxia sporothermodurans M5547-25	contig	GCA_016771495	46224.140		46224	9.65
66792	ASM1677163v1 assembly for Heyndrickxia sporothermodurans M5055-A	contig	GCA_016771635	46224.146	8075443667	46224	8.9
66792	ASM1677133v1 assembly for Heyndrickxia sporothermodurans L1_146	contig	GCA_016771335	46224.133		46224	8.34
66792	ASM1677157v1 assembly for Heyndrickxia sporothermodurans M5233-6	contig	GCA_016771575	46224.144	8063621716	46224	6.38
66792	ASM1677147v1 assembly for Heyndrickxia sporothermodurans M5547-20	contig	GCA_016771475	46224.139		46224	3.65
66792	ASM305508v1 assembly for Heyndrickxia sporothermodurans DSM 10599	scaffold	GCA_003055085	46224.16	8063943008	46224

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bacillus sporothermodurans strain DSM10599(T) rrnA operon 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF071850	222	46224
20218	Bacillus sporothermodurans strain DSM10599(T) rrnB operon 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF071852	386	46224
3982	Bacillus sporothermodurans 16S rRNA type I gene, partial sequence	U49078	1497	46224

GC content

@ref	GC-content (mol%)	Method
3982	36.7	high performance liquid chromatography (HPLC)
29921	36.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Heyndrickxia sporothermodurans DSM 10599
NCBI: GCA_003055085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	59.80	no
125439	motility	BacteriaNetⓘ	yes	50.90	no
125439	gram_stain	BacteriaNetⓘ	variable	64.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus sporothermodurans strain DSM 10599
PATRIC: 46224.121

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.15	no
125438	anaerobic	anaerobicⓘ	no	95.78	yes
125438	spore-forming	spore-formingⓘ	yes	92.50	yes
125438	aerobic	aerobicⓘ	yes	81.37	yes
125438	thermophilic	thermophileⓘ	no	86.40	yes
125438	flagellated	motile2+ⓘ	yes	81.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Taxonomic Evaluation of the Heyndrickxia (Basonym Bacillus) sporothermodurans Group (H. sporothermodurans, H. vini, H. oleronia) Based on Whole Genome Sequences.	Fiedler G, Herbstmann AD, Doll E, Wenning M, Brinks E, Kabisch J, Breitenwieser F, Lappann M, Bohnlein C, Franz CMAP	Microorganisms	10.3390/microorganisms9020246	2021
Genetics	Genome Sequences of Bacillus sporothermodurans Strains Isolated from Ultra-High-Temperature Milk.	Owusu-Darko R, Allam M, de Oliveira SD, Ferreira CAS, Grover S, Mtshali S, Ismail A, Mallappa RH, Tabit F, Buys EM	Microbiol Resour Announc	10.1128/MRA.00145-19	2019
	Evaluation of modified stainless steel surfaces targeted to reduce biofilm formation by common milk sporeformers.	Jindal S, Anand S, Huang K, Goddard J, Metzger L, Amamcharla J	J Dairy Sci	10.3168/jds.2016-11395	2016
Phylogeny	Development of a real-time PCR assay for direct detection and quantification of Bacillus sporothermodurans in ultra-high temperature milk.	Abouelnaga M, Lamas A, Miranda JM, Osman M, Cepeda A, Franco CM	J Dairy Sci	10.3168/jds.2016-10852	2016
Stress	The effects of wet heat treatment on the structural and chemical components of Bacillus sporothermodurans spores.	Tabit FT, Buys E	Int J Food Microbiol	10.1016/j.ijfoodmicro.2010.03.033	2010
	Recovery potential of cavitation-induced injured cells of common spore-forming bacteria in skim milk exposed to ultrasonication.	Almalki TA, Anand S	JDS Commun	10.3168/jdsc.2021-0109	2021
Phylogeny	Bacillus vini sp. nov. isolated from alcohol fermentation pit mud.	Ma K, Chen X, Guo X, Wang Y, Wang H, Zhou S, Song J, Kong D, Zhu J, Dong W, He M, Hu G, Zhao B, Ruan Z	Arch Microbiol	10.1007/s00203-016-1218-4	2016
Phylogeny	Bacillus acidicola sp. nov., a novel mesophilic, acidophilic species isolated from acidic Sphagnum peat bogs in Wisconsin.	Albert RA, Archambault J, Rossello-Mora R, Tindall BJ, Matheny M	Int J Syst Evol Microbiol	10.1099/ijs.0.02337-0	2005
Phylogeny	Bacillus endophyticus sp. nov., isolated from the inner tissues of cotton plants (Gossypium sp.).	Reva ON, Smirnov VV, Pettersson B, Priest FG	Int J Syst Evol Microbiol	10.1099/00207713-52-1-101	2002

References

#3982	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10599
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#26292	IJSEM 307 2012 ( DOI 10.1099/ijs.0.026740-0 , PubMed 21398506 )
#29921	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26292
#38662	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123274	Collection of Institut Pasteur ; Curators of the CIP; CIP 104910
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Heyndrickxia sporothermodurans (DSM 10599, LMG 17668, M 215)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016756695

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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