Name: Paenibacillus validus DSM 3037
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11488

Type strain:

Species: Paenibacillus validus

Culture col. no.: DSM 3037, ATCC 43897, LMG 11161, NCIMB 12782, NRRL NRS-1000, NRS 1000, JCM 9077, BCRC 15911, CCM 3894, CCUG 27416, CFBP 4263, CIP 103120, IFO 15382, KCTC 3401, KCTC 3859, NBRC 15382, NRRL B-14484

Strain history: NRRL NRS-1000 <-- N. R. Smith NRS-1000 <-- J. R. Porter V1 <-- G. Bredemann.

NCBI tax ID(s): 1349783 (strain), 44253 (species)

Other strains from Paenibacillus validus

P. validus Q1, DSM 5395, ATCC 29948, LMG 9817, ...
P. validus Q13, DSM 6390
P. validus Q12, DSM 6543, LMG 14664
P. validus Pohb3, DSM 6544, LMG 14667
P. validus DSM 6545, Tri 4
P. validus Q2, DSM 6554
P. validus CIP 103495
P. validus CIP 103496
P. validus CIP 103497
P. validus CCUG 27416, NRRL NRS 1000
P. validus CCUG 34590
P. validus CCUG 49249
P. validus CCUG 52230
P. validus CCUG 53941
P. validus CCUG 54819

Section

Paenibacillus validus DSM 3037 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus validus**
	Full Scientific Name (PNU)	Paenibacillus validus (Nakamura 1984) Ash et al. 1994

	Synonym	Paenibacillus gordonae
	Synonym	Bacillus gordonae
	Synonym	Bacillus validus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1279]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1279]

Culture medium growth

[Ref.: #1279]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1279]

Culture medium composition

expand / minimize

[Ref.: #34116]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34116]

Culture medium growth

[Ref.: #34116]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1279]	growth	30 °C
[Ref.: #34116]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #1279]	Temperature range	mesophilic
[Ref.: #34116]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1279]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB073203 (>99% sequence identity) for Paenibacillus validus subclade from Microbeatlas

Aquatic Samples	577
Soil Samples	2020
Animal Samples	722
Plant Samples	483
Total Samples	3802

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1279]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Paenibacillus validus clone JJ-1F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478103	437	ENA	44253 tax ID	*
[Ref.: #20218]	Paenibacillus validus strain DSM3037 DNA for 16S ribosomal RNA, partial sequence	D78320	1424	ENA	44253 tax ID	*
[Ref.: #20218]	Paenibacillus validus gene for 16S rRNA, partial sequence	AB073203	1487	ENA	44253 tax ID	*
[Ref.: #20218]	Paenibacillus validus gene for 16S rRNA, partial sequence, strain: NBRC 15382	AB680854	1466	ENA	44253 tax ID	*
[Ref.: #20218]	Paenibacillus validus ribosomal RNA small subunit ribosomal RNA gene, complete sequence	M77489	1418	ENA	44253 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus validus NBRC 15382	1349783.3	wgs	PATRIC	1349783 tax ID	*
[Ref.: #67770]	Paenibacillus validus NBRC 15382 NBRC 15382	GCA_004000985	contig	GenBank	1349783 tax ID
[Ref.: #66792]	Clostridia bacterium RGIG915	GCA_017391485	contig	PATRIC	2044939 tax ID	*

[Ref.: #1279]	GC-content	53.9 mol%
[Ref.: #67770]	GC-content	54 mol%	Buoyant density centrifugation (BD)

Availability in culture collections External links

[Ref.: #1279]

Culture collection no.

DSM 3037, ATCC 43897, LMG 11161, NCIMB 12782, NRRL NRS-1000, NRS 1000, JCM 9077, BCRC 15911, CCM 3894, CCUG 27416, CFBP 4263, CIP 103120, IFO 15382, KCTC 3401, KCTC 3859, NBRC 15382, NRRL B-14484

[Ref.: #20218]

Associated Passport(s) in StrainInfo

5211, 5208, 5207, 5213, 158274

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Paenibacillus (formerly Bacillus) gordonae (Pichinoty et al. 1986) Ash et al. 1994 is a later subjective synonym of Paenibacillus (formerly Bacillus) validus (Nakamura 1984) Ash et al. 1994: emended description of P. validus.	Heyndrickx M, Vandemeulebroecke K, Scheldeman P, Hoste B, Kersters K, De Vos P, Logan NA, Aziz AM, Ali N, Berkeley RC	Int J Syst Bacteriol	10.1099/00207713-45-4-661	1995	*
Metabolism	Isolation and characterization of a gene cluster for dibenzofuran degradation in a new dibenzofuran-utilizing bacterium, Paenibacillus sp. strain YK5.	Iida T, Nakamura K, Izumi A, Mukouzaka Y, Kudo T	Arch Microbiol	10.1007/s00203-005-0045-9	2005	*
Metabolism	The bacterium Paenibacillus validus stimulates growth of the arbuscular mycorrhizal fungus Glomus intraradices up to the formation of fertile spores.	Hildebrandt U, Ouziad F, Marner FJ, Bothe H	FEMS Microbiol Lett	10.1111/j.1574-6968.2005.00027.x	2006	*
Phylogeny	Paenibacillus ginsengihumi sp. nov., a bacterium isolated from soil in a ginseng field.	Kim MK, Kim YA, Park MJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.65378-0	2008	*
Phylogeny	Paenibacillus xylanisolvens sp. nov., a xylan-degrading bacterium from soil.	Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.022269-0	2010	*

References

#1279

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3037

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34116 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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