Name: Paenibacillus polymyxa DSM 36
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11487

Type strain:

Species: Paenibacillus polymyxa

Culture col. no.: DSM 36, ATCC 842, BUCSAV 162, CCM 1459, JCM 2507, LMG 13294, NCIB 8158, NCTC 10343, CCUG 7426, BCRC 11168, CECT 155, CFBP 4258, CIP 66.22, HAMBI 1897, HAMBI 635, IAM 13419, IFO 15309, KCTC 3627, KCTC 3858, LMG 6319, NBRC 15309, NCFB 1774, NCIMB 8158, NRRL B-4317, VKM B-514, VTT E-97008, NCDO 1774

Strain history: CIP <- 1966, ATCC, Bacillus polymyxa <- A.J. Kluyver

NCBI tax ID(s): 1036171 (strain), 1406 (species)

SI-ID 92295

LMG 13294, ATCC 842, CCM 1459, CCUG 7426, CECT 155, IAM 13419, JCM 2507, LMG 6319, NCFB 1774, NCIB 8158, NCTC 10343, NRRL B-4317, NCDO 1774, CCRC 11168, IFO 15309, NCIMB 8158, VKM B-514, CIP 66.22, LMD 24.16, NRRL NRS-1105, KCTC 3627, NBRC 15309, NCCB 24016, HAMBI 635, HAMBI 1897, CFBP 4258, BCRC 11168, CCT 0512, CCT 2479, KCTC 3858, KACC 10485, NBIMCC 3664, NCIMB 30165, NCIM 2539, CDBB 35, VKM B-5, VTT E-97008, VKM B-420, VKM B-703, DSM 36

Special Collections

Other strains from Paenibacillus polymyxa

Section

Paenibacillus polymyxa DSM 36 is a facultative anaerobe, mesophilic, Gram-positive bacterium of the family Paenibacillaceae.

Gram-positive
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus polymyxa**
	Full Scientific Name (LPSN)	Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994

	Synonym	"Clostridium* polymyxa"*
	Synonym	"Aerobacillus* polymyxa"*
	Synonym	Paenibacillus jamilae
	Synonym	Bacillus polymyxa

Information on morphological and physiological properties Morphology

[Ref.: #121931]	Gram stain	positive

[Ref.: #121931]	Cell shape	rod-shaped

[Ref.: #121931]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2036]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2036]

Culture medium growth

[Ref.: #2036]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2036]

Culture medium composition

expand / minimize

[Ref.: #37333]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37333]

Culture medium growth

[Ref.: #37333]

Culture medium composition

expand / minimize

[Ref.: #121931]

Culture medium

CIP Medium 72

[Ref.: #121931]

Culture medium growth

[Ref.: #121931]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2036]		growth	30 °C
[Ref.: #37333]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121931]		growth	22-45 °C
[Ref.: #121931]	no	growth	10 °C
[Ref.: #121931]	no	growth	55 °C

	pH	Kind of pH		pH
[Ref.: #121931]			growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121931]

Oxygen tolerance

facultative anaerobe

[Ref.: #2036]

Name of produced compound

inhibitors for glycoside hydrolases

	Salt	Tested relation		Salt conc.
[Ref.: #121931]	NaCl		growth	0-2	%
[Ref.: #121931]	NaCl	no	growth	4	%
[Ref.: #121931]	NaCl	no	growth	6	%
[Ref.: #121931]	NaCl	no	growth	8	%
[Ref.: #121931]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121931]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121931]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	glycogen ChEBI	+	fermentation	* from API Coryne
[Ref.: #121931]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121931]	nitrate ChEBI	+	reduction
[Ref.: #121931]	nitrate ChEBI	+	respiration
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #121931]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121931]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121931]		acetoin ChEBI	+
[Ref.: #121931]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121931]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121931]	amylase	+
[Ref.: #121931]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #121931]	caseinase	+	3.4.21.50
[Ref.: #121931]	catalase	+	1.11.1.6
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #121931]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121931]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121931]	gelatinase	-
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #121931]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #121931]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121931]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121931]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121931]	oxidase	-
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121931]	tween esterase	-
[Ref.: #121931]	urease	-	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121931]	12050	not determinedn.d.	+	-	-	+	+	+	-	-	+	+	+	+	+	-	+/-	-	-	+	-	-	+	+/-	+	+	+	+	+	+	+	+	+	+	+/-	+/-	+	+	+	-	+	+	-	-	-	-	-	-	+	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121931]	3216	not determinedn.d.	+	+	+	+	+	-	+	+	-	+	+	+	+	+	+	-	+	+	+	+	+	+	-	-	-	+	-	-	-	-	-	+	-	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #44995]	1830	+	-	-	-	-	+	+	-	+	-	+	-	not determinedn.d.	+	+	+	+	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121931]	13096	-	-	+	+	-	-	-	-	-	+	+	+	+	+	-	+	+	-	-	-

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2036]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121931]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain DSM 36T	AJ320493	1521	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 1	HG324064	1634	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 2	HG324065	1636	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 3	HG324066	1637	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 4	HG324067	1635	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 5	HG324068	1632	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 6	HG324069	1641	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 7	HG324070	1636	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 8	HG324071	1636	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 9	HG324072	1641	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 10	HG324073	1671	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 11	HG324074	1663	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 12	HG324075	1667	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 13	HG324076	1670	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 14	HG324077	1604	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequence	U60654	347	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequence	U60655	347	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequence	U60656	347	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequence	U60657	347	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequence	U60658	347	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequence	U60659	347	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	B.polymyxa 16SrRNA	X57308	1547	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa gene for 16S rRNA, partial sequence	AB006947	279	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa gene for 16S ribosomal RNA, partial sequence	AB042063	1504	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa gene for 16S rRNA, partial sequence, strain: IAM 13419	D16276	1491	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa strain KCTC3627 16S ribosomal RNA gene, partial sequence	AY359636	1438	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 1	HE981766	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 2	HE981767	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 3	HE981768	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 4	HE981769	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 5	HE981770	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 6	HE981771	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 7	HE981772	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 8	HE981773	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 9	HE981774	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 10	HE981775	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 11	HE981776	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 12	HE981777	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 13	HE981778	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 14	HE981779	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 15	HE981780	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 16	HE981781	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 17	HE981782	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 18	HE981783	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 19	HE981784	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 20	HE981785	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 21	HE981786	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 22	HE981787	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 23	HE981788	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 24	HE981789	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 25	HE981790	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 26	HE981791	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 27	HE981792	1476	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	Paenibacillus polymyxa gene for 16S rRNA, partial sequence	AB271758	1479	GenBank ENA	1406 tax ID	*
[Ref.: #20218]	B.polymyxa 16S ribosomal RNA	X60632	1434	GenBank ENA	1406 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus polymyxa ATCC 842	GCA_000217775	scaffold	GenBank ENA	1036171 tax ID
[Ref.: #67770]	Paenibacillus polymyxa NCTC10343	GCA_900454525	contig	GenBank ENA	1406 tax ID
[Ref.: #66792]	Paenibacillus polymyxa ATCC 842 2	GCA_903797665	scaffold	GenBank ENA	1036171 tax ID	*
[Ref.: #66792]	Paenibacillus polymyxa ATCC 842	1036171.11	wgs	PATRIC	1036171 tax ID	*
[Ref.: #66792]	Paenibacillus polymyxa strain NCTC10343	1406.162	wgs	PATRIC	1406 tax ID	*
[Ref.: #66792]	Paenibacillus polymyxa N.R. Smith 1105, ATCC 842	2547132099	draft	JGI IMG/M	1036171 tax ID	*

[Ref.: #2036]	GC-content	45.6 mol%	Buoyant density centrifugation (BD)
[Ref.: #2036]	GC-content	44.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	46.6 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	44 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus polymyxa ATCC 842 ATCC 842 NCBI: GCA_022811565.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	65.684	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.768	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	64.304	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.411	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.68	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.981	no

Availability in culture collections External links

[Ref.: #2036]

Culture collection no.

DSM 36, ATCC 842, BUCSAV 162, CCM 1459, JCM 2507, LMG 13294, NCIB 8158, NCTC 10343, CCUG 7426, BCRC 11168, CECT 155, CFBP 4258, CIP 66.22, HAMBI 1897, HAMBI 635, IAM 13419, IFO 15309, KCTC 3627, KCTC 3858, LMG 6319, NBRC 15309, NCFB 1774, NCIMB 8158, NRRL B-4317, VKM B-514, VTT E-97008, NCDO 1774

[Ref.: #80721]

SI-ID 92295

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Analysis of Xylose Operon from Paenibacillus polymyxa ATCC842 and Development of Tools for Gene Expression.	Wang Z, Fang Y, Shi Y, Xin Y, Gu Z, Yang T, Li Y, Ding Z, Shi G, Zhang L	Int J Mol Sci	10.3390/ijms23095024	2022	*
Phylogeny	Paenibacillus farraposensis sp. nov., isolated from a root nodule of Arachis villosa.	Roldan DM, Costa A, Kralova S, Busse HJ, Amarelle V, Fabiano E, Menes RJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005294	2022	*
Metabolism	Antifungal Activity of Biocontrol Agents In Vitro and Potential Application to Reduce Mycotoxins (Aflatoxin B1 and Ochratoxin A).	Illueca F, Vila-Donat P, Calpe J, Luz C, Meca G, Quiles JM	Toxins (Basel)	10.3390/toxins13110752	2021	*
Genetics	Peptide-based quorum sensing systems in Paenibacillus polymyxa.	Voichek M, Maass S, Kroniger T, Becher D, Sorek R	Life Sci Alliance	10.26508/lsa.202000847	2020	*
Phylogeny	Genome-based reclassification of Paenibacillus jamilae Aguilera et al. 2001 as a later heterotypic synonym of Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994.	Kwak MJ, Choi SB, Ha SM, Kim EH, Kim BY, Chun J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004140	2020	*
Phylogeny	Paenibacillus ottowii sp. nov. isolated from a fermentation system processing bovine manure.	Velazquez LF, Rajbanshi S, Guan S, Hinchee M, Welsh A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003672	2020	*
Metabolism	Unraveling the subtleties of beta-(1-->3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families.	Kuhaudomlarp S, Pergolizzi G, Patron NJ, Henrissat B, Field RA	J Biol Chem	10.1074/jbc.RA119.007712	2019	*
Pathogenicity	Enhanced NADH Metabolism Involves Colistin-Induced Killing of Bacillus subtilis and Paenibacillus polymyxa.	Yu Z, Zhu Y, Fu J, Qiu J, Yin J	Molecules	10.3390/molecules24030387	2019	*
Phylogeny	Paenibacillus bovis sp. nov., isolated from raw yak (Bos grunniens) milk.	Gao C, Han J, Liu Z, Xu X, Hang F, Wu Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000900	2016	*
Phylogeny	Paenibacillus kyungheensis sp. nov., isolated from flowers of magnolia.	Siddiqi MZ, Siddiqi MH, Im WT, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000521	2015	*
Phylogeny	Paenibacillus enshidis sp. nov., Isolated from the Nodules of Robinia pseudoacacia L.	Yin J, He D, Li X, Zeng X, Tian M, Cheng G	Curr Microbiol	10.1007/s00284-015-0854-2	2015	*
Phylogeny	Paenibacillus doosanensis sp. nov., isolated from soil.	Kim JH, Kang H, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.050716-0	2014	*
Phylogeny	Paenibacillus beijingensis sp. nov., a nitrogen-fixing species isolated from wheat rhizosphere soil.	Wang LY, Li J, Li QX, Chen SF	Antonie Van Leeuwenhoek	10.1007/s10482-013-9974-5	2013	*
Enzymology	Antibacterial, antifungal and antioxidant activities of the ethanol extract of the stem bark of Clausena heptaphylla.	Fakruddin M, Mannan KS, Mazumdar RM, Afroz H	BMC Complement Altern Med	10.1186/1472-6882-12-232	2012	*
Genetics	Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium.	Jeong H, Park SY, Chung WH, Kim SH, Kim N, Park SH, Kim JF	J Bacteriol	10.1128/JB.05447-11	2011	*
Phylogeny	Identification and application of AFLP-derived genetic markers for quantitative PCR-based tracking of Bacillus and Paenibacillus spp. released in soil.	Providenti MA, Begin M, Hynes S, Lamarche C, Chitty D, Hahn J, Beaudette LA, Scroggins R, Smith ML	Can J Microbiol	10.1139/w09-071	2009	*
Phylogeny	Auxin production and detection of the gene coding for the Auxin Efflux Carrier (AEC) protein in Paenibacillus polymyxa.	Da Mota FF, Gomes EA, Seldin L	J Microbiol	10.1007/s12275-007-0245-x	2008	*
Enzymology	Expression and secretion of Bacillus polymyxa neopullulanase in Saccharomyces cerevisiae.	Yebra MJ, Blasco A, Sanz P	FEMS Microbiol Lett	10.1111/j.1574-6968.1999.tb13353.x	1999	*
Biotechnology	Production of l-Phenylalanine from Starch by Analog-Resistant Mutants of Bacillus polymyxa.	Shetty K, Crawford DL, Pometto AL	Appl Environ Microbiol	10.1128/aem.52.4.637-643.1986	1986	*
	A Type I Restriction Modification System Influences Genomic Evolution Driven by Horizontal Gene Transfer in Paenibacillus polymyxa.	Chen Z, Shen M, Mao C, Wang C, Yuan P, Wang T, Sun D	Front Microbiol	10.3389/fmicb.2021.709571	2021	*
	Benzotriazole-Mediated Synthesis and Antibacterial Activity of Novel N-Acylcephalexins.	Agha KA, Abo-Dya NE, Ibrahim TS, Abdel-Aal EH, Hegazy WA	Sci Pharm	10.3390/scipharm84030484	2016	*

References

#2036

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 36

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37333 ; Curators of the CIP;
#44995 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7426

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80721

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92295.1 )

#121931 Collection of Institut Pasteur ; Curators of the CIP; CIP 66.22
* These data were automatically processed and therefore are not curated

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