Paenibacillus polymyxa II is a mesophilic prokaryote that was isolated from garden soil.
mesophilic genome sequence| @ref 20215 |
Last LPSN update
2026-02-09 11:20:34 |
| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Paenibacillaceae |
| Genus Paenibacillus |
| Species Paenibacillus polymyxa |
| Full scientific name Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994 |
| Synonyms (4) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 155 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive  | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 155 | positive | growth | 30 | mesophilic |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM3532308v1 assembly for Paenibacillus polymyxa DSM 365 | complete | GCA_035323085   | 1406.465  | 1406 | 96.16 |  | |
| 66792 | ASM2253798v1 assembly for Paenibacillus polymyxa DSM 365 | scaffold | GCA_022537985 | 1406.334 | 1406 | 66.27 | | |
| 66792 | DSM365V1 assembly for Paenibacillus polymyxa DSM 365 | contig | GCA_000714835 | 1406.47 | 2585427968  | 1406 | 62.95 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genome reduction in Paenibacillus polymyxa DSM 365 for chassis development. | Ravagnan G, Lesemann J, Muller MF, Poehlein A, Daniel R, Noack S, Kabisch J, Schmid J. | Front Bioeng Biotechnol | 10.3389/fbioe.2024.1378873 | 2024 | |
| MALDI-TOF as a powerful tool for identifying and differentiating closely related microorganisms: the strange case of three reference strains of Paenibacillus polymyxa. | Lebano I, Fracchetti F, Vigni ML, Mejia JF, Felis G, Lampis S. | Sci Rep | 10.1038/s41598-023-50010-w | 2024 | | |
| Simultaneous online monitoring of viscosity and oxygen transfer rate in shake flask cultures. | Hanke R, Sieben M, Finger M, Schnoor K, Jessberger S, Weyand J, de la Fuente LC, Mann M, Azizan A, Kosfeld U, Buchs J. | J Biol Eng | 10.1186/s13036-025-00552-6 | 2025 | | |
| Rheological characterization of artificial paenan compositions produced by Paenibacillus polymyxa DSM 365. | Schilling C, Gansbiller M, Ruhmann B, Sieber V, Schmid J. | Carbohydr Polym | 10.1016/j.carbpol.2023.121243 | 2023 | | |
| CRISPR-Cas9 driven structural elucidation of the heteroexopolysaccharides from Paenibacillus polymyxa DSM 365 | Schilling C, Klau LJ, Aachmann FL, Ruhmann B, Schmid J, Sieber V. | Carbohydrate polymers. | 2023 | | ||
| Implementation of Spore Display in Paenibacillus polymyxa with Different Hydrolytic Enzymes. | Zander M, Schmid J, Kabisch J. | Microorganisms | 10.3390/microorganisms12071438 | 2024 | | |
| CRISPR-Cas9 driven structural elucidation of the heteroexopolysaccharides from Paenibacillus polymyxa DSM 365. | Schilling C, Klau LJ, Aachmann FL, Ruhmann B, Schmid J, Sieber V. | Carbohydr Polym | 10.1016/j.carbpol.2023.120763 | 2023 | | |
| Genetics | Pangenome analysis of Paenibacillus polymyxa strains reveals the existence of multiple and functionally distinct Paenibacillus species. | Maggi F, Giuliodori AM, Brandi A, Cimarelli L, Alcantara R, Pallotti S, Amantini C, Petrelli D, Fabbretti A, Spurio R, Napolioni V. | Appl Environ Microbiol | 10.1128/aem.01740-24 | 2024 | |
| Engineering the carbon and redox metabolism of Paenibacillus polymyxa for efficient isobutanol production. | Meliawati M, Volke DC, Nikel PI, Schmid J. | Microb Biotechnol | 10.1111/1751-7915.14438 | 2024 | | |
| Genetics | Genomic diversity in Paenibacillus polymyxa: unveiling distinct species groups and functional variability. | Wallner A, Antonielli L, Mesguida O, Rey P, Compant S. | BMC Genomics | 10.1186/s12864-024-10610-w | 2024 | |
| Production of highly pure R,R-2,3-butanediol for biological plant growth promoting agent using carbon feeding control of Paenibacillus polymyxa MDBDO. | Ju JH, Jo MH, Heo SY, Kim MS, Kim CH, Paul NC, Sang H, Oh BR. | Microb Cell Fact | 10.1186/s12934-023-02133-y | 2023 | | |
| Foam Formation in Shake Flasks and Its Consequences. | Vonester D, Hoffmann K, Palmen T, Regestein L, Richter U, Altenhoff AL, Hoffmann M, Radeva Y, Buchs J, Magnus JB. | Eng Life Sci | 10.1002/elsc.70057 | 2025 | | |
| Carrot Discard as a Promising Feedstock to Produce 2,3-Butanediol by Fermentation with P. polymyxa DSM 365. | Lopez-Linares JC, Mateo Martinez A, Coca M, Lucas S, Garcia-Cubero MT. | Bioengineering (Basel) | 10.3390/bioengineering10080937 | 2023 | | |
| Genetics | Promising non-model microbial cell factories obtained by genome reduction. | Ravagnan G, Schmid J. | Front Bioeng Biotechnol | 10.3389/fbioe.2024.1427248 | 2024 | |
| Production of 2,3-Butanediol from non-detoxified wheat straw hydrolysate: Impact of microbial inhibitors on Paenibacillus polymyxa DSM 365 | Okonkwo CC, Ujor V, Ezeji TC. | Industrial crops and products. | 10.1016/j.indcrop.2020.113047 | 2021 | | |
| Draft Genome Sequence of Paenibacillus polymyxa DSM 292, a Gram-Positive, Spore-Forming Soil Bacterium with High Biotechnological Potential. | Heinze S, Lagkouvardos I, Liebl W, Schwarz WH, Kornberger P, Zverlov VV. | Microbiol Resour Announc | 10.1128/mra.00071-20 | 2020 | | |
| Supplementing broiler diets with bacterial selenium nanoparticles enhancing performance, carcass traits, blood indices, antioxidant status, and caecal microbiota of Eimeria tenella-infected broiler chickens. | Alsulami MN, El-Saadony MT. | Poult Sci | 10.1016/j.psj.2023.103111 | 2023 | | |
| Highly efficient production of 2,3-butanediol from xylose and glucose by newly isolated thermotolerant Cronobacter sakazakii. | Keo-Oudone C, Phommachan K, Suliya O, Nurcholis M, Bounphanmy S, Kosaka T, Yamada M. | BMC Microbiol | 10.1186/s12866-022-02577-z | 2022 | | |
| Production of Different Biochemicals by Paenibacillus polymyxa DSM 742 From Pretreated Brewers' Spent Grains. | Didak Ljubas B, Novak M, Trontel A, Rajkovic A, Kelemen Z, Mardetko N, Grubisic M, Pavlecic M, Tominac VP, Santek B. | Front Microbiol | 10.3389/fmicb.2022.812457 | 2022 | | |
| Optimizing the Growth Conditions of the Selected Plant-Growth-Promoting Rhizobacteria Paenibacillus sp. MVY-024 for Industrial Scale Production. | Kaziuniene J, Mazylyte R, Krasauskas A, Toleikiene M, Gegeckas A. | Biology (Basel) | 10.3390/biology11050745 | 2022 | | |
| Effects of an EPS Biosynthesis Gene Cluster of Paenibacillus polymyxa WLY78 on Biofilm Formation and Nitrogen Fixation under Aerobic Conditions. | He X, Li Q, Wang N, Chen S. | Microorganisms | 10.3390/microorganisms9020289 | 2021 | | |
| Bioprocess development of 2, 3-butanediol production using agro-industrial residues. | Hazeena SH, Shurpali NJ, Siljanen H, Lappalainen R, Anoop P, Adarsh VP, Sindhu R, Pandey A, Binod P. | Bioprocess Biosyst Eng | 10.1007/s00449-022-02761-5 | 2022 | | |
| Chronicle of a Soil Bacterium: Paenibacillus polymyxa E681 as a Tiny Guardian of Plant and Human Health. | Jeong H, Choi SK, Ryu CM, Park SH. | Front Microbiol | 10.3389/fmicb.2019.00467 | 2019 | | |
| Metabolic engineering of Corynebacterium glutamicum for efficient production of optically pure (2R,3R)-2,3-butanediol. | Kou M, Cui Z, Fu J, Dai W, Wang Z, Chen T. | Microb Cell Fact | 10.1186/s12934-022-01875-5 | 2022 | | |
| Genetics | Paenibacillus polymyxa ND25: candidate genome for lignocellulosic biomass utilization. | Bohra V, Dafale NA, Purohit HJ. | 3 Biotech | 10.1007/s13205-018-1274-3 | 2018 | |
| Comparative genomic analysis of azasugar biosynthesis. | Beal HE, Horenstein NA. | AMB Express | 10.1186/s13568-021-01279-5 | 2021 | | |
| Conversion of Food Waste into 2,3-Butanediol via Thermophilic Fermentation: Effects of Carbohydrate Content and Nutrient Supplementation. | Yu D, O'Hair J, Poe N, Jin Q, Pinton S, He Y, Huang H. | Foods | 10.3390/foods11020169 | 2022 | | |
| Microbial detoxification of lignocellulosic biomass hydrolysates: Biochemical and molecular aspects, challenges, exploits and future perspectives. | Ujor VC, Okonkwo CC. | Front Bioeng Biotechnol | 10.3389/fbioe.2022.1061667 | 2022 | | |
| Norwegian Soils and Waters Contain Mesophilic, Plastic-Degrading Bacteria. | Charnock C. | Microorganisms | 10.3390/microorganisms9010094 | 2021 | | |
| Genetics | Recent advances of Cas12a applications in bacteria. | Meliawati M, Schilling C, Schmid J. | Appl Microbiol Biotechnol | 10.1007/s00253-021-11243-9 | 2021 | |
| Genome-based analyses to learn from and about Paenibacillus sonchi genomovar Riograndensis SBR5T. | Wendisch VF, Brito LF, Passaglia LMP. | Genet Mol Biol | 10.1590/1678-4685-gmb-2023-0115 | 2024 | | |
| Peanut oils from roasting operations: An overview of production technologies, flavor compounds, formation mechanisms, and affecting factors. | Ma S, Ding C, Zhou C, Shi H, Bi Y, Zhang H, Xu X. | Heliyon | 10.1016/j.heliyon.2024.e34678 | 2024 | | |
| CRISPR interference-based gene repression in the plant growth promoter Paenibacillus sonchi genomovar Riograndensis SBR5. | Brito LF, Schultenkamper K, Passaglia LMP, Wendisch VF. | Appl Microbiol Biotechnol | 10.1007/s00253-020-10571-6 | 2020 | | |
| Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. | Nubel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann RI, Ludwig W, Backhaus H. | J Bacteriol | 10.1128/jb.178.19.5636-5643.1996 | 1996 | | |
| Valorisation of xylose to renewable fuels and chemicals, an essential step in augmenting the commercial viability of lignocellulosic biorefineries. | Narisetty V, Cox R, Bommareddy R, Agrawal D, Ahmad E, Pant KK, Chandel AK, Bhatia SK, Kumar D, Binod P, Gupta VK, Kumar V. | Sustain Energy Fuels | 10.1039/d1se00927c | 2021 | | |
| Metabolism | Insights in the Complex DegU, DegS, and Spo0A Regulation System of Paenibacillus polymyxa by CRISPR-Cas9-Based Targeted Point Mutations. | Meliawati M, May T, Eckerlin J, Heinrich D, Herold A, Schmid J | Appl Environ Microbiol | 10.1128/aem.00164-22 | 2022 | |
| Genetics | Complete Genome Sequence of Paenibacillus polymyxa DSM 365, a Soil Bacterium of Agricultural and Industrial Importance. | Kumar S, Ujor VC | Microbiol Resour Announc | 10.1128/mra.00329-22 | 2022 | |
| Structural elucidation of the fucose containing polysaccharide of Paenibacillus polymyxa DSM 365. | Schilling C, Klau LJ, Aachmann FL, Ruhmann B, Schmid J, Sieber V | Carbohydr Polym | 10.1016/j.carbpol.2021.118951 | 2021 | | |
| Metabolism | Engineering of the 2,3-butanediol pathway of Paenibacillus polymyxa DSM 365. | Schilling C, Ciccone R, Sieber V, Schmid J | Metab Eng | 10.1016/j.ymben.2020.07.009 | 2020 | |
| Metabolism | Inactivation of the Levansucrase Gene in Paenibacillus polymyxa DSM 365 Diminishes Exopolysaccharide Biosynthesis during 2,3-Butanediol Fermentation. | Okonkwo CC, Ujor V, Cornish K, Ezeji TC | Appl Environ Microbiol | 10.1128/AEM.00196-20 | 2020 | |
| Tailor-made exopolysaccharides-CRISPR-Cas9 mediated genome editing in Paenibacillus polymyxa. | Rutering M, Cress BF, Schilling M, Ruhmann B, Koffas MAG, Sieber V, Schmid J | Synth Biol (Oxf) | 10.1093/synbio/ysx007 | 2017 | | |
| Biotechnology | Investigation of relationship between 2,3-butanediol toxicity and production during growth of Paenibacillus polymyxa. | Okonkwo CC, Ujor V, Ezeji TC | N Biotechnol | 10.1016/j.nbt.2016.10.006 | 2016 | |
| Genetics | Genome sequence of type strain Paenibacillus polymyxa DSM 365, a highly efficient producer of optically active (R,R)-2,3-butanediol. | Xie NZ, Li JX, Song LF, Hou JF, Guo L, Du QS, Yu B, Huang RB | J Biotechnol | 10.1016/j.jbiotec.2014.07.441 | 2014 | |
| Metabolism | Enhanced fed-batch fermentation of 2,3-butanediol by Paenibacillus polymyxa DSM 365. | Hassler T, Schieder D, Pfaller R, Faulstich M, Sieber V | Bioresour Technol | 10.1016/j.biortech.2012.08.047 | 2012 | |
| Genetics | Genome sequence and description of Paenibacillus ihuae strain GD6 sp. nov., isolated from the stool of a 62-year-old Frenchman. | Al-Bayssari C, Dubourg G, Cimmino T, Okdah L, Mathlouthi N, Nguyen TT, Andrieu C, Rathored J, Fournier PE, Raoult D, Rolain JM. | New Microbes New Infect | 10.1016/j.nmni.2018.02.010 | 2018 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive11482.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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