Name: Paenibacillus polymyxa II
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11482

Type strain:

Species: Paenibacillus polymyxa

Strain Designation: II

Culture col. no.: DSM 365

Strain history: <- D. Claus, II

NCBI tax ID(s): 1406 (species)

SI-ID 1163

LMG 6322, DSM 365, CCUG 26012, CCUG 26013, BCRC 11976, CCRC 11976

Other strains from Paenibacillus polymyxa

P. polymyxa DSM 36, ATCC 842, BUCSAV 162, CCM ... (type strain)
P. polymyxa DSM 292, CCM 1609, CCUG 26011, ...
P. polymyxa 354, DSM 356, ATCC 8523, CCM 1465, ...
P. polymyxa III, DSM 372
P. polymyxa X16, DSM 740, ATCC 31325
P. polymyxa V3, X18, DSM 741, ATCC 31326
P. polymyxa TS3, X20, DSM 742
P. polymyxa B.3, B3, DSM 13815, CECT 5266, ...
P. polymyxa CIP 103698
P. polymyxa NRS-279, 8277, CIP A39, ATCC 7070, ...
P. polymyxa CIP 103121, CN 2366
P. polymyxa 11D2, CIP 103124
P. polymyxa NRS-252, CIP 52.77, NRRL B-367, ...
P. polymyxa CIP 52.78, ATCC 7047, NRRL B-366, ...
P. polymyxa 239-86, CIP 102271
P. polymyxa 263-86, CIP 102287
P. polymyxa CIP A43, NCTC 1380, NRRL NRS-1238, ...
P. polymyxa CIP A48
P. polymyxa CIP A40
P. polymyxa CIP A46, NRRL B-465, NRRL: B-465
P. polymyxa EG2,
P. polymyxa CCUG 3378, IAM 12566
P. polymyxa CCUG 29690 A
P. polymyxa CCUG 32191
P. polymyxa CCUG 33583
P. polymyxa CCUG 35174, ATCC 43865
P. polymyxa CCUG 45338
P. polymyxa JCM 17240, FERM P-19158
P. polymyxa JCM 20106, IAM 1210, IFO 3020, ...
P. polymyxa JCM 20385, ATCC 10401, BUCSAV 163, ...
P. polymyxa JCM 8035, IAM 19064
P. polymyxa JCM 8036, IAM 19068
P. polymyxa JCM 8037, IAM 19077
P. polymyxa JCM 8038, IAM 19110
P. polymyxa JCM 8039, IAM 19111

Section

Paenibacillus polymyxa II is a mesophilic bacterium that was isolated from garden soil.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus polymyxa**
	Full Scientific Name (LPSN)	Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994

	Synonym	"Aerobacillus* polymyxa"*
	Synonym	"Clostridium* polymyxa"*
	Synonym	Bacillus polymyxa
	Synonym	Paenibacillus jamilae

Information on culture and growth conditions Culture and growth conditions

[Ref.: #155]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #155]

Culture medium growth

[Ref.: #155]

Culture medium link

Medium recipe at MediaDive

[Ref.: #155]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #155]			growth	30 °C

[Ref.: #155]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #155]

Name of produced compound

inhibitors for glycoside hydrolases

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #155]	Sample type/isolated from	garden soil
[Ref.: #155]	Geographic location (country and/or sea, region)	Göttingen
[Ref.: #155]	Country	Germany
[Ref.: #155]	Country ISO 3 Code	DEU
[Ref.: #155]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #155]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus polymyxa strain DSM 365	1406.47	wgs	PATRIC	1406 tax ID	*
[Ref.: #66792]	Paenibacillus polymyxa DSM 365	2585427968	draft	JGI IMG/M	1406 tax ID	*
[Ref.: #66792]	Paenibacillus polymyxa DSM 365	GCA_022537985	scaffold	GenBank	1406 tax ID	*
[Ref.: #66792]	Paenibacillus polymyxa DSM 365	GCA_000714835	contig	GenBank	1406 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus polymyxa strain DSM 365 PATRIC: 1406.47
[Ref.: #69480]	motile	yes	87.399	no
[Ref.: #69480]	gram-positive	yes	87.544	no
[Ref.: #69480]	anaerobic	no	97.991	no
[Ref.: #69480]	halophile	no	92.97	no
[Ref.: #69480]	spore-forming	yes	96.138	no
[Ref.: #69480]	thermophile	no	99.683	no
[Ref.: #69480]	glucose-util	yes	91.877	no
[Ref.: #69480]	aerobic	yes	84.69	no
[Ref.: #69480]	flagellated	yes	64.915	no
[Ref.: #69480]	glucose-ferment	no	70.794	no

Availability in culture collections External links

[Ref.: #155]

Culture collection no.

DSM 365

[Ref.: #80716]

SI-ID 1163

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Insights in the Complex DegU, DegS, and Spo0A Regulation System of Paenibacillus polymyxa by CRISPR-Cas9-Based Targeted Point Mutations.	Meliawati M, May T, Eckerlin J, Heinrich D, Herold A, Schmid J	Appl Environ Microbiol	10.1128/aem.00164-22	2022	*
Genetics	Complete Genome Sequence of Paenibacillus polymyxa DSM 365, a Soil Bacterium of Agricultural and Industrial Importance.	Kumar S, Ujor VC	Microbiol Resour Announc	10.1128/mra.00329-22	2022	*
Metabolism	Engineering of the 2,3-butanediol pathway of Paenibacillus polymyxa DSM 365.	Schilling C, Ciccone R, Sieber V, Schmid J	Metab Eng	10.1016/j.ymben.2020.07.009	2020	*
Metabolism	Inactivation of the Levansucrase Gene in Paenibacillus polymyxa DSM 365 Diminishes Exopolysaccharide Biosynthesis during 2,3-Butanediol Fermentation.	Okonkwo CC, Ujor V, Cornish K, Ezeji TC	Appl Environ Microbiol	10.1128/AEM.00196-20	2020	*
Biotechnology	Investigation of relationship between 2,3-butanediol toxicity and production during growth of Paenibacillus polymyxa.	Okonkwo CC, Ujor V, Ezeji TC	N Biotechnol	10.1016/j.nbt.2016.10.006	2016	*
Genetics	Genome sequence of type strain Paenibacillus polymyxa DSM 365, a highly efficient producer of optically active (R,R)-2,3-butanediol.	Xie NZ, Li JX, Song LF, Hou JF, Guo L, Du QS, Yu B, Huang RB	J Biotechnol	10.1016/j.jbiotec.2014.07.441	2014	*
Metabolism	Enhanced fed-batch fermentation of 2,3-butanediol by Paenibacillus polymyxa DSM 365.	Hassler T, Schieder D, Pfaller R, Faulstich M, Sieber V	Bioresour Technol	10.1016/j.biortech.2012.08.047	2012	*
	Structural elucidation of the fucose containing polysaccharide of Paenibacillus polymyxa DSM 365.	Schilling C, Klau LJ, Aachmann FL, Ruhmann B, Schmid J, Sieber V	Carbohydr Polym	10.1016/j.carbpol.2021.118951	2021	*
	Tailor-made exopolysaccharides-CRISPR-Cas9 mediated genome editing in Paenibacillus polymyxa.	Rutering M, Cress BF, Schilling M, Ruhmann B, Koffas MAG, Sieber V, Schmid J	Synth Biol (Oxf)	10.1093/synbio/ysx007	2017	*

References

#155	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 365

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80716

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1163.1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus polymyxa strain DSM 365

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