Name: Paenibacillus pabuli NRS-924
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11478

Type strain:

Species: Paenibacillus pabuli

Strain Designation: NRS-924, P 1

Culture col. no.: CCUG 27415, NRRL NRS-924, DSM 3036, ATCC 43899, LMG 11158, NCIMB 12781, NRS 924, JCM 9074, CCM 3893, CIP 103119, IFO 13638, KCTC 3398, LMG 15970, NBRC 13638

Strain history: CIP <- 1988, L.K. Nakamura, NRRL: strain 924, Bacillus circulans

NCBI tax ID(s): 1349782 (strain), 1472 (species)

SI-ID 1158

LMG 11158, ATCC 43899, CCM 3893, CIP 103119, DSM 3036, IFO 13638, JCM 9074, LMG 15970, NCIMB 12781, CCUG 27415, KCTC 3398, NBRC 13638, CFBP 4262, HAMBI 1825, BCRC 15857, CCRC 15857, CCT 4721, KACC 10912, VTT E-011777, NRRL NRS-924

Other strains from Paenibacillus pabuli

P. pabuli DSM 13407, NRRL B-745
P. pabuli CCUG 34883
P. pabuli CCUG 35418
P. pabuli CCUG 41484

Section

Paenibacillus pabuli NRS-924 is a mesophilic bacterium that was isolated from green or fermenting fodder.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus pabuli**
	Full Scientific Name (LPSN)	Paenibacillus pabuli (Nakamura 1984 ex Schieblich 1923) Ash et al. 1994

Synonym

Bacillus pabuli

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1278]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1278]

Culture medium growth

[Ref.: #1278]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1278]

Culture medium composition

expand / minimize

[Ref.: #40531]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #40531]

Culture medium growth

[Ref.: #40531]

Culture medium composition

expand / minimize

[Ref.: #121495]

Culture medium

CIP Medium 3

[Ref.: #121495]

Culture medium growth

[Ref.: #121495]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1278]	growth	30 °C
[Ref.: #40531]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #1278]	Temperature range	mesophilic
[Ref.: #40531]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1278]	Sample type/isolated from	green or fermenting fodder

[Ref.: #121495]	Sample type/isolated from	Other, Green or fermenting fodder
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Host	#Plants	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB073191 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	208
Soil Samples	1643
Animal Samples	410
Plant Samples	609
Total Samples	2870

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1278]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121495]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Paenibacillus pabuli clone JS-4F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478102	547	ENA	1472 tax ID	*
[Ref.: #20218]	Paenibacillus pabuli gene for 16S rRNA, partial sequence	AB045094	1500	ENA	1472 tax ID	*
[Ref.: #20218]	Paenibacillus pabuli gene for 16S rRNA, partial sequence	AB073191	1507	ENA	1472 tax ID	*
[Ref.: #20218]	Paenibacillus pabuli gene for 16S rRNA, partial sequence, strain: NBRC 13638	AB680475	1477	ENA	1472 tax ID	*
[Ref.: #20218]	B.pabuli 16S ribosomal RNA	X60630	1435	ENA	1472 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus pabuli NBRC 13638 NBRC 13638	GCA_001514495	contig	GenBank	1349782 tax ID
[Ref.: #66792]	Paenibacillus pabuli NBRC 13638	1349782.3	wgs	PATRIC	1349782 tax ID	*
[Ref.: #66792]	Paenibacillus pabuli NBRC 13638	2681813001	draft	JGI IMG/M	1349782 tax ID	*

[Ref.: #1278]	GC-content	49.9 mol%
[Ref.: #67770]	GC-content	49 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus pabuli NBRC 13638 PATRIC: 1349782.3
[Ref.: #69480]	motile	yes	87.493	no
[Ref.: #69480]	gram-positive	yes	75.85	no
[Ref.: #69480]	anaerobic	no	98.178	no
[Ref.: #69480]	halophile	no	80.979	no
[Ref.: #69480]	spore-forming	yes	95.353	no
[Ref.: #69480]	glucose-util	yes	92.475	no
[Ref.: #69480]	thermophile	no	99.533	yes
[Ref.: #69480]	flagellated	yes	73.787	no
[Ref.: #69480]	aerobic	yes	85.946	no
[Ref.: #69480]	glucose-ferment	no	85.543	no

Availability in culture collections External links

[Ref.: #1278]

Culture collection no.

CCUG 27415, NRRL NRS-924, DSM 3036, ATCC 43899, LMG 11158, NCIMB 12781, NRS 924, JCM 9074, CCM 3893, CIP 103119, IFO 13638, KCTC 3398, LMG 15970, NBRC 13638

[Ref.: #80712]

SI-ID 1158

Literature:

Topic	Title	Authors	Journal	DOI	Year
Cultivation	Isolation, Identification and Characterization of Paenibacillus pabuli E1 to Explore Its Aflatoxin B1 Degradation Potential.	Li G, Li X, Dong L, Li C, Zou P, Saleemi MK, Murtaza B, Jin B, Zhao H, Wang L, Li S, Yang H, Xu Y	Curr Microbiol	10.1007/s00284-021-02624-4	2021	*
Phylogeny	Paenibacillus xylanivorans sp. nov., a xylan-degrading bacterium isolated from decaying forest soil.	Ghio S, Sauka DH, Ferrari AE, Piccini FE, Ontanon OM, Campos E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003686	2019	*
Phylogeny	Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine.	Roux V, Fenner L, Raoult D	Int J Syst Evol Microbiol	10.1099/ijs.0.65228-0	2008	*
Phylogeny	Paenibacillus xylanilyticus sp. nov., an airborne xylanolytic bacterium.	Rivas R, Mateos PF, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.63173-0	2005	*

References

#1278

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3036

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40531 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80712

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1158.1 )

#121495 Collection of Institut Pasteur ; Curators of the CIP; CIP 103119
* These data were automatically processed and therefore are not curated

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Paenibacillus pabuli NBRC 13638

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