Paenibacillus pabuli (CCUG 27415, NRRL NRS-924, DSM 3036)

Name: Paenibacillus pabuli (CCUG 27415, NRRL NRS-924, DSM 3036)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11478

Type strain

Strain Designation NRS-924, P 1

Culture col. no. CCUG 27415 NRRL NRS-924 DSM 3036 ATCC 43899 LMG 11158 11 more

NCBI tax ID(s) 1349782 1472

Special Collections DSMZ CCUG JCM KCTC CIP

History CIP <- 1988, L.K. Nakamura, NRRL: strain 924, Bacillus circulans DSMZ <- NRRL, NRS-924 <- N.R. Smith, 924 (Bacillus circulans) <- J.R. Porter <- M. Schieblich (Bacillus pabuli, P 1) JCM <-- NRRL NRS-924 <-- N. R. Smith NRS-924 <-- J. R. Porter P1 <-- M. Schieblich. CIP <- 1988, L.K. Nakamura, NRRL: strain 924, Bacillus circulans

Links

Paenibacillus pabuli NRS-924 is a bacterium that was isolated from green or fermenting fodder.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 1158

LMG 11158,ATCC 43899,CCM 3893,CIP 103119,DSM 3036,IFO 13638,JCM 9074,LMG 15970,NCIMB 12781,CCUG 27415,KCTC 3398,NBRC 13638,CFBP 4262,HAMBI 1825,BCRC 15857,CCRC 15857,CCT 4721,KACC 10912,VTT E-011777,NRRL NRS-924

@ref 20215

Last LPSN update 2026-05-29 08:27:34

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus pabuli

Full scientific name Paenibacillus pabuli (Nakamura 1984 ex Schieblich 1923) Ash et al. 1994

Synonyms (1)

Bacillus pabuli

BacDive ID	Other strains from **Paenibacillus pabuli** (4)	Type strain
11479	P. pabuli DSM 13407, NRRL B-745
148134	P. pabuli CCUG 34883
148427	P. pabuli CCUG 35418
150524	P. pabuli CCUG 41484

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1278	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40531	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
121495	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1278	positive	growth	30
40531	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.927

Spore formation

@ref	Spore formation	Confidence
125438		93.129
125439		95.842

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Agriculture
#Host	#Plants

Isolation

@ref	Sample type
1278	green or fermenting fodder
121495	Other, Green or fermenting fodder

Taxonmaps

69479

Global distribution of 16S sequence AB073191 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	208
Soil Samples	1643
Animal Samples	410
Plant Samples	609
Total Samples	2870

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1278	1	Risk group (German classification) According to TRBA 466
121495	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM151449v1 assembly for Paenibacillus pabuli NBRC 13638	contig	GCA_001514495	1349782.3	2681813001	1349782	66.8
124043	ASM3580391v1 assembly for Paenibacillus pabuli NRS-924	contig	GCA_035803915	1472.14		1472	65.91

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Paenibacillus pabuli gene for 16S rRNA, partial sequence	AB045094	1500	1472
20218	Paenibacillus pabuli gene for 16S rRNA, partial sequence	AB073191	1507	1472
20218	Paenibacillus pabuli gene for 16S rRNA, partial sequence, strain: NBRC 13638	AB680475	1477	1472
20218	B.pabuli 16S ribosomal RNA	X60630	1435	1472

GC content

@ref	GC-content (mol%)	Method
1278	49.9
67770	49	Buoyant density centrifugation (BD)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM151449v1 assembly for Paenibacillus pabuli NBRC 13638
NCBI: GCA_001514495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.93	no
125439	gram_stain	BacteriaNetⓘ	variable	74.44	no
125439	spore_formation	BacteriaNetⓘ	yes	95.84	no
125439	motility	BacteriaNetⓘ	yes	89.63	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus pabuli NBRC 13638
PATRIC: 1349782.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	60.09	no
125438	anaerobic	anaerobicⓘ	no	90.72	no
125438	spore-forming	spore-formingⓘ	yes	93.13	no
125438	aerobic	aerobicⓘ	yes	50.62	no
125438	thermophilic	thermophileⓘ	no	93.36	no
125438	flagellated	motile2+ⓘ	yes	84.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Differentiation of Paenibacillus larvae subsp. larvae, the cause of American foulbrood of honeybees, by using PCR and restriction fragment analysis of genes encoding 16S rRNA.	Alippi AM, Lopez AC, Aguilar OM.	Appl Environ Microbiol	10.1128/aem.68.7.3655-3660.2002	2002
	Paenibacillus larvae-Directed Bacteriophage HB10c2 and Its Application in American Foulbrood-Affected Honey Bee Larvae.	Beims H, Wittmann J, Bunk B, Sproer C, Rohde C, Gunther G, Rohde M, von der Ohe W, Steinert M.	Appl Environ Microbiol	10.1128/aem.00804-15	2015
Cultivation	Isolation, Identification and Characterization of Paenibacillus pabuli E1 to Explore Its Aflatoxin B1 Degradation Potential.	Li G, Li X, Dong L, Li C, Zou P, Saleemi MK, Murtaza B, Jin B, Zhao H, Wang L, Li S, Yang H, Xu Y	Curr Microbiol	10.1007/s00284-021-02624-4	2021
	Paenibacillus hubeiensis sp. nov.: A Novel Selenium-Resistant Bacterium Isolated from the Rhizosphere of Galinsoga parviflora in a Selenium-Rich Region of Enshi, Hubei Province.	Kong J, Fu Z, Liu Y, Jin C, Peng X, Liu X, Gao Y, Xiao Q, Su Y, Zhao Z, Song Y, Li X, Zhang D.	Microorganisms	10.3390/microorganisms13071559	2025
Phylogeny	Paenibacillus xylanivorans sp. nov., a xylan-degrading bacterium isolated from decaying forest soil.	Ghio S, Sauka DH, Ferrari AE, Piccini FE, Ontanon OM, Campos E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003686	2019
Phylogeny	Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine.	Roux V, Fenner L, Raoult D	Int J Syst Evol Microbiol	10.1099/ijs.0.65228-0	2008
Phylogeny	Paenibacillus xylanilyticus sp. nov., an airborne xylanolytic bacterium.	Rivas R, Mateos PF, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.63173-0	2005

References

#1278	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3036
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40531	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121495	Collection of Institut Pasteur ; Curators of the CIP; CIP 103119
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Paenibacillus pabuli (CCUG 27415, NRRL NRS-924, DSM 3036)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001514495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media