Name: Paenibacillus macquariensis subsp. macquariensis DSM 2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11477

Type strain:

Species: Paenibacillus macquariensis subsp. macquariensis

Culture col. no.: DSM 2, ATCC 23464, CIP 103269, LMG 6935, NCTC 10419, CCUG 37394

Strain history: <- ATCC <- B.J. Marshall

NCBI tax ID(s): 948756 (species)

Other strains from Paenibacillus macquariensis subsp. macquariensis

P. macquariensis subsp. macquariensis DSM 489, ATCC 23465, LMG 13290, ...

Section

Paenibacillus macquariensis subsp. macquariensis DSM 2 is an aerobe, psychrophilic bacterium that was isolated from soil.

aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus macquariensis subsp. macquariensis**
	Full Scientific Name (PNU)	Paenibacillus macquariensis subsp. macquariensis (Marshall and Ohye 1966) Hoshino et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.234

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37135]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37135]

Culture medium growth

[Ref.: #37135]

Culture medium composition

expand / minimize

[Ref.: #2010]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2010]

Culture medium growth

[Ref.: #2010]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2010]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #2010]		growth	20 °C
[Ref.: #37135]		growth	22 °C
[Ref.: #53646]		growth	20 °C
[Ref.: #53646]	no	growth	30 °C

[Ref.: #2010]	Temperature range	psychrophilic
[Ref.: #37135]	Temperature range	psychrophilic
[Ref.: #53646]	Temperature range	psychrophilic
[Ref.: #53646]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #53646]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2010]	Sample type/isolated from	soil
[Ref.: #2010]	Geographic location (country and/or sea, region)	Macquarie island
[Ref.: #2010]	Country	Australia
[Ref.: #2010]	Country ISO 3 Code	AUS
[Ref.: #2010]	Continent	Australia and Oceania

[Ref.: #53646]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X60625 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	100
Soil Samples	1259
Animal Samples	152
Plant Samples	220
Total Samples	1731

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2010]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2010]	Paenibacillus macquariensis subsp. macquariensis gene for 16S rRNA, partial sequence	AB073193	1539	ENA	1468 tax ID
[Ref.: #20218]	Vibrionaceae bacterium DSM2 16S ribosomal RNA gene, partial sequence	KC439178	925	ENA	1343286 tax ID	*
[Ref.: #20218]	Paenibacillus macquariensis subsp. macquariensis partial 16S rRNA gene, strain DSM/ATCC23464	X57305	1556	ENA	1468 tax ID	*
[Ref.: #20218]	Paenibacillus macquariensis subsp. macquariensis genes for 16S rRNA, 16S-23S internal transcribed spacer, 23S rRNA, partial and complete sequence, strain: DSM2	AB468954	586	ENA	1468 tax ID	*
[Ref.: #20218]	Paenibacillus macquariensis subsp. macquariensis 16S ribosomal RNA, strain NCTC 10419	X60625	1438	ENA	1468 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus macquariensis ATCC 23464	GCA_900156375	scaffold	GenBank	948756 tax ID	*
[Ref.: #66792]	Paenibacillus macquariensis strain ATCC 23464	948756.4	wgs	PATRIC	948756 tax ID	*
[Ref.: #66792]	Paenibacillus macquariensis strain ATCC 23464	948756.3	wgs	PATRIC	948756 tax ID	*
[Ref.: #66792]	Paenibacillus macquariensis ATCC 23464	2681812895	draft	JGI IMG/M	948756 tax ID	*

[Ref.: #2010]	GC-content	41.6 mol%	Buoyant density centrifugation (BD)
[Ref.: #2010]	GC-content	39.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus macquariensis ATCC 23464 NCBI: GCA_900156375.1
[Ref.: #69480]	spore-forming	yes	100	yes
[Ref.: #69480]	anaerobic	no	96.172	no
[Ref.: #69480]	gram-positive	yes	100	no
[Ref.: #69480]	thermophile	no	99.931	yes
[Ref.: #69480]	motile	yes	95.234	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus macquariensis ATCC 23464 NCBI: GCA_900156375.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #2010]

Culture collection no.

DSM 2, ATCC 23464, CIP 103269, LMG 6935, NCTC 10419, CCUG 37394

[Ref.: #20218]

Associated Passport(s) in StrainInfo

4846, 4843, 153611, 4842, 4852

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus crassostreae sp. nov., isolated from the Pacific oyster Crassostrea gigas.	Shin SK, Kim E, Yi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002444	2017	*
Phylogeny	Paenibacillus glacialis sp. nov., isolated from the Kafni glacier of the Himalayas, India.	Kishore KH, Begum Z, Pathan AAK, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.015271-0	2009	*
Phylogeny	Paenibacillus macquariensis subsp. defensor subsp. nov., isolated from boreal soil.	Hoshino T, Nakabayashi T, Hirota K, Matsuno T, Koiwa R, Fujiu S, Saito I, Tkachenko OB, Matsuyama H, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.006304-0	2009	*
Phylogeny	Paenibacillus antarcticus sp. nov., a novel psychrotolerant organism from the Antarctic environment.	Montes MJ, Mercade E, Bozal N, Guinea J	Int J Syst Evol Microbiol	10.1099/ijs.0.63078-0	2004	*

References

#2010

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37135 ; Curators of the CIP;
#53646 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37394

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus macquariensis ATCC 23464

Paenibacillus macquariensis ATCC 23464

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