Name: Paenibacillus macerans 888
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11475

Type strain:

Species: Paenibacillus macerans

Strain Designation: 888, NRS-888

Culture col. no.: DSM 24, ATCC 8244, CCM 2012, CIP 66.19, IAM 12467, LMG 13281, NCIB 9368, NCTC 6355, CCUG 7423, LMG 6324, IAM 1227, NRS 888, JCM 2500, BCRC 14680, CECT 19, IFO 15307, KCTC 1822, NBRC 15307, NCFB 1764, NCIMB 9368, NRRL B-172, NRRL B-394, NRRL B-4267, VKM B-506, VTT E-81138, NCDO 1764

Strain history: CIP <- 2013, DSMZ <- ATCC <- N.R. Smith: strain NRS-888 <- 1940, J. Porter <- E. Pribram <- F. Schardinger

NCBI tax ID(s): 1349781 (strain), 44252 (species)

SI-ID 1147

LMG 6324, ATCC 8244, CCM 2012, CCUG 7423, CECT 19, DSM 24, IAM 1227, IAM 12467, JCM 2500, LMG 13281, NCFB 1764, NCIMB 9368, NCTC 6355, NCIB 9368, NCDO 1764, CCRC 14680, IFO 15307, KCTC 1822, VKM B-506, CIP 66.19, LMD 48.19, VTT E-81138, NBRC 15307, NRRL B-172, NRRL B-394, NRRL B-4267, NCCB 48019, HAMBI 636, HAMBI 1958, BCRC 14680, CFBP 4253, CCT 2475, CCT 0573, NRRL NRS-888, NCAIM B.01948, NCIM 2131

Other strains from Paenibacillus macerans

P. macerans DSM 357, CCM 1610, CCUG 26009, ...
P. macerans CCUG 26010, LMG 6402, DSM 1574, ...
P. macerans 8276, 8275, DSM 2892, ATCC 7069, ...
P. macerans WP-1, DSM 24746, CCTCC AB 2011115, ...
P. macerans 231-86, CIP 102268
P. macerans CIP 51.23
P. macerans CCUG 39867
P. macerans CCUG 49775
P. macerans JCM 13340

Section

Paenibacillus macerans 888 is an aerobe, spore-forming, mesophilic human pathogen of the family Paenibacillaceae.

motile
spore-forming
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus macerans**
	Full Scientific Name (LPSN)	Paenibacillus macerans (Schardinger 1905) Ash et al. 1994

	Synonym	Bacillus macerans
	Synonym	"Aerobacillus* macerans"*
	Synonym	Paenibacillus thermophilus

Information on morphological and physiological properties Morphology

[Ref.: #120735]	Gram stain	negative
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #120735]	Cell shape	rod-shaped

[Ref.: #120735]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.584

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36542]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #36542]

Culture medium growth

[Ref.: #36542]

Culture medium composition

expand / minimize

[Ref.: #2025]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2025]

Culture medium growth

[Ref.: #2025]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2025]

Culture medium composition

expand / minimize

[Ref.: #120735]

Culture medium

CIP Medium 3

[Ref.: #120735]

Culture medium growth

[Ref.: #120735]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120735]

Culture medium

CIP Medium 29

[Ref.: #120735]

Culture medium growth

[Ref.: #120735]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2025]		growth	30 °C
[Ref.: #36542]		growth	30 °C
[Ref.: #44992]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #120735]		growth	22-55 °C
[Ref.: #120735]	no	growth	10 °C

[Ref.: #2025]	Temperature range	mesophilic
[Ref.: #36542]	Temperature range	mesophilic
[Ref.: #44992]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120735]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #120735]			growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44992]	Oxygen tolerance	aerobe
[Ref.: #120735]	Oxygen tolerance	facultative anaerobe

[Ref.: #120735]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #2025]

Name of produced compound

amylase

	Salt	Tested relation		Salt conc.
[Ref.: #120735]	NaCl		growth	0-2	%
[Ref.: #120735]	NaCl	no	growth	4	%
[Ref.: #120735]	NaCl	no	growth	6	%
[Ref.: #120735]	NaCl	no	growth	8	%
[Ref.: #120735]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120735]	citrate ChEBI	-	carbon source
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #120735]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	+	fermentation	* from API Coryne
[Ref.: #120735]	hippurate ChEBI	+	hydrolysis
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #120735]	nitrate ChEBI	+	reduction
[Ref.: #120735]	nitrate ChEBI	+	respiration
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #120735]	nitrite ChEBI	-	reduction
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120735]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120735]		acetoin ChEBI	-
[Ref.: #120735]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120735]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #120735]	amylase	+
[Ref.: #120735]	beta-galactosidase	+	3.2.1.23
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #120735]	caseinase	+	3.4.21.50
[Ref.: #120735]	catalase	+	1.11.1.6
[Ref.: #68379]	catalase	-	1.11.1.6	* from API Coryne
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #120735]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120735]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120735]	gelatinase	+/-
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #120735]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #120735]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120735]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120735]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120735]	oxidase	+
[Ref.: #120735]	protease	+
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120735]	tween esterase	+
[Ref.: #120735]	urease	-	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120735]	3213	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	+	-	+	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #44992]	1828	+	+	-	+	-	+	+	-	+	-	+	-	not determinedn.d.	+	+	+	+	+	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120735]	13092	-	-	+	+	-	-	-	+	-	-	+	-	+	+	-	+	+	+	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	100	5 of 5
[Ref.: #66794]	NAD metabolism	100	18 of 18
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	pyrimidine metabolism	86.67	39 of 45
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	purine metabolism	85.11	80 of 94
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	degradation of sugar alcohols	81.25	13 of 16
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	degradation of sugar acids	80	20 of 25
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	75	9 of 12
[Ref.: #66794]	degradation of pentoses	75	21 of 28
[Ref.: #66794]	polyamine pathway	73.91	17 of 23
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	oxidative phosphorylation	70.33	64 of 91
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	coenzyme M biosynthesis	70	7 of 10
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	ascorbate metabolism	54.55	12 of 22
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	phenol degradation	45	9 of 20
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	chlorophyll metabolism	33.33	6 of 18
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	vitamin B12 metabolism	29.41	10 of 34
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB073196 (>99% sequence identity) for Paenibacillus macerans subclade from Microbeatlas

Aquatic Samples
Soil Samples
Animal Samples	15
Plant Samples
Total Samples	15

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2025]	Pathogenicity (human)	yes, in single cases
[Ref.: #2025]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120735]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus macerans JCM 2500 gene for 16S ribosomal RNA, partial sequence	LC425346	1476	ENA	44252 tax ID
[Ref.: #20218]	Paenibacillus macerans clone JR-1F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478101	539	ENA	44252 tax ID	*
[Ref.: #20218]	B.macerans 16S rRNA	X57306	1551	ENA	44252 tax ID	*
[Ref.: #20218]	Paenibacillus macerans gene for 16S rRNA, partial sequence	AB006946	278	ENA	44252 tax ID	*
[Ref.: #20218]	Paenibacillus macerans gene for 16S rRNA, partial sequence	AB073196	1504	ENA	44252 tax ID	*
[Ref.: #20218]	Paenibacillus macerans gene for 16S rRNA, partial sequence, strain: JCM 2500	AB162431	538	ENA	44252 tax ID	*
[Ref.: #20218]	Paenibacillus macerans gene for 16S rRNA, partial sequence, strain: JCM 2500	AB162432	550	ENA	44252 tax ID	*
[Ref.: #20218]	Paenibacillus macerans strain JCM2500 DNA for 16S ribosomal RNA, partial sequence	D78319	1437	ENA	44252 tax ID	*
[Ref.: #20218]	Paenibacillus macerans gene for 16S rRNA, partial sequence, strain: NBRC 15307	AB363744	1479	ENA	44252 tax ID	*
[Ref.: #20218]	B.macerans 16S ribosomal RNA	X60624	1435	ENA	44252 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus macerans NBRC 15307	GCA_004000965	contig	GenBank	1349781 tax ID
[Ref.: #67770]	Paenibacillus macerans NCTC6355	GCA_900454495	contig	GenBank	44252 tax ID
[Ref.: #66792]	Paenibacillus macerans NBRC 15307	1349781.5	wgs	PATRIC	1349781 tax ID	*
[Ref.: #66792]	Paenibacillus macerans strain NCTC6355	44252.8	wgs	PATRIC	44252 tax ID	*
[Ref.: #66792]	Paenibacillus macerans NCTC 6355	2904127458	draft	JGI IMG/M	44252 tax ID	*
[Ref.: #66792]	Paenibacillus macerans ATCC 8244	GCA_000746875	scaffold	GenBank	44252 tax ID	*

[Ref.: #2025]	GC-content	53.2 mol%	Buoyant density centrifugation (BD)
[Ref.: #2025]	GC-content	52.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus macerans strain NCTC6355 PATRIC: 44252.8
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus macerans NBRC 15307 PATRIC: 1349781.5
[Ref.: #69480]	motile	yes	89.515	no
[Ref.: #69480]	gram-positive	yes	79.801	no
[Ref.: #69480]	anaerobic	no	97.215	yes
[Ref.: #69480]	halophile	no	87.824	no
[Ref.: #69480]	spore-forming	yes	95.894	no
[Ref.: #69480]	glucose-util	yes	90.114	no
[Ref.: #69480]	thermophile	no	99.506	no
[Ref.: #69480]	flagellated	yes	71.64	no
[Ref.: #69480]	aerobic	yes	77.219	no
[Ref.: #69480]	glucose-ferment	no	78.285	no

Availability in culture collections External links

[Ref.: #2025]

Culture collection no.

DSM 24, ATCC 8244, CCM 2012, CIP 66.19, IAM 12467, LMG 13281, NCIB 9368, NCTC 6355, CCUG 7423, LMG 6324, IAM 1227, NRS 888, JCM 2500, BCRC 14680, CECT 19, IFO 15307, KCTC 1822, NBRC 15307, NCFB 1764, NCIMB 9368, NRRL B-172, NRRL B-394, NRRL B-4267, VKM B-506, VTT E-81138, NCDO 1764

[Ref.: #80709]

SI-ID 1147

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus oralis sp. nov., Isolated from Human Subgingival Dental Plaque of Gingivitis Lesion.	Park SN, Lim YK, Shin JH, Jo E, Chang YH, Shin Y, Paek J, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01843-0	2019	*
Phylogeny	Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994.	Kobayashi H, Tanizawa Y, Sakamoto M, Nakamura Y, Ohkuma M, Tohno M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003160	2018	*
Phylogeny	Paenibacillus thermophilus sp. nov., a novel bacterium isolated from a sediment of hot spring in Fujian province, China.	Zhou Y, Gao S, Wei DQ, Yang LL, Huang X, He J, Zhang YJ, Tang SK, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9755-6	2012	*
Phylogeny	Paenibacillus fonticola sp. nov., isolated from a warm spring.	Chou JH, Chou YJ, Lin KY, Sheu SY, Sheu DS, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.64872-0	2007	*
Phylogeny	Paenibacillus macerans possesses two types of 16S rDNA copies in a genome with a length difference of twelve base pairs.	Hamasaki Y, Watanabe Y, Kotoura S, Fuchu H, Sugiyama M, Hashizume K, Morita H	Biosci Biotechnol Biochem	10.1271/bbb.69.1995	2005	*
Stress	Fine structure of mesosomal involvement during Bacillus macerans sporulation.	Decker S, Maier S	J Bacteriol	10.1128/jb.121.1.363-372.1975	1975	*
Phylogeny	Paenibacillus mellifer sp. nov., isolated from gut of the honey bee Apis mellifera.	Cho ES, Hwang CY, Kwon HW, Seo MJ	Arch Microbiol	10.1007/s00203-022-03178-0	2022	*

References

#2025

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36542 ; Curators of the CIP;
#44992 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7423

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80709

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1147.1 )

#120735 Collection of Institut Pasteur ; Curators of the CIP; CIP 66.19
* These data were automatically processed and therefore are not curated

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Paenibacillus macerans strain NCTC6355

Paenibacillus macerans NBRC 15307

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