Paenibacillus amylolyticus (DSM 15211, KACC 11263, LMG 21767)

Name: Paenibacillus amylolyticus (DSM 15211, KACC 11263, LMG 21767)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11466

Type strain

NCBI tax ID(s) 1451

Special Collections DSMZ CCUG JCM KCTC CIP

History DSMZ <- NRRL <- K. F. Kellerman JCM <-- HSCC 434 <-- NRRL NRS-290 <-- N. R. Smith NRS-290 <-- K. F. Kellerman. CIP <- 1988, L.K. Nakamura, NRRL: strain B-377 <- N.R. Smith: strain NRS-290, Bacillus circulans <- Kellerman, USDA, Bacillus amylolyticus

Links

Paenibacillus amylolyticus DSM 15211 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297024

LMG 11153,ATCC 9995,CIP 103117,DSM 3034,IFO 13625,IFO 15876,IFO 15957,JCM 9906,NRRL B-14940,NRRL B-377,NRRL NRS-290,CCUG 28514,DSM 11730,DSM 11747,NRRL B-14945,NCIMB 13390,CCM 3891,DSM 15211,KCTC 3005,KCTC 3455,NBRC 13625,NBRC 15957,LMG 21767,CFBP 4261,NBRC 15876,BCRC 14684,CCRC 14684,KACC 11263,VTT E-021924,VTT E-022256

@ref 20215

Last LPSN update 2026-05-29 08:27:34

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus amylolyticus

Full scientific name Paenibacillus amylolyticus (Nakamura 1984 ex Choukévitch 1911) Ash et al. 1994

Synonyms (1)

Bacillus amylolyticus

BacDive ID	Other strains from **Paenibacillus amylolyticus** (11)	Type strain
11464	P. amylolyticus NRS-290, DSM 11730, IFO 15957, JCM 9906, ... (type strain)
11465	P. amylolyticus DSM 11747, HSCC 430, NRS 290 (type strain)
141723	P. amylolyticus CCUG 5197
143564	P. amylolyticus CCUG 20167
146940	P. amylolyticus CCUG 32498
146977	P. amylolyticus CCUG 32586
147238	P. amylolyticus CCUG 33157
149608	P. amylolyticus CCUG 38066
152330	P. amylolyticus CCUG 46457
155088	P. amylolyticus CCUG 56436
156299	P. amylolyticus CCUG 61093

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116359	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5758	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
116359	CIP Medium 72	Medium recipe at CIP
116359	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5758	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116359	facultative anaerobe
125439	facultative anaerobe	94.602

Spore formation

@ref	Spore formation	Confidence
125439		91.736
125438		92.466

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	+	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
116359	17632 ChEBI	nitrate	+	reduction
116359	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116359	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116359	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116359	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
116359	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116359	-	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116359	not determinedn.d.	+	-	+/-	+	+	+	-	-	+	+	+	+	+	-	+/-	-	-	+	-	+/-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+/-	-	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
5758	soil	USA	USA	North America
67770	Soil
116359	Environment, Soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5758	1	Risk group (German classification) According to TRBA 466
116359	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	ASM400102v1 assembly for Paenibacillus amylolyticus NBRC 15957	contig	GCA_004001025	1451.36	1451	64.11

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Paenibacillus amylolyticus gene for 16S rRNA, partial sequence	AB073190	1503	1451
67770	Paenibacillus amylolyticus gene for 16S rRNA, partial sequence, strain: NBRC 15957	AB363743	1478	1451
67770	Paenibacillus amylolyticus DNA for 16S rRNA	D85396	1508	1451

GC content

@ref	GC-content (mol%)	Method
5758	46.3-46.6
67770	46.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM400102v1 assembly for Paenibacillus amylolyticus NBRC 15957
NCBI: GCA_004001025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.60	no
125439	motility	BacteriaNetⓘ	yes	89.00	no
125439	gram_stain	BacteriaNetⓘ	variable	69.65	no
125439	spore_formation	BacteriaNetⓘ	yes	91.74	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus amylolyticus strain NBRC 15957
PATRIC: 1451.36

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.76	no
125438	anaerobic	anaerobicⓘ	no	95.57	yes
125438	spore-forming	spore-formingⓘ	yes	92.47	no
125438	aerobic	aerobicⓘ	no	53.92	yes
125438	thermophilic	thermophileⓘ	no	95.18	yes
125438	flagellated	motile2+ⓘ	yes	86.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Data associated with the characterization and presumptive identification of Bacillus and related species isolated from honey samples by using HiCrome Bacillus agar.	Alippi AM.	Data Brief	10.1016/j.dib.2019.104206	2019
	Phylogenetically diverse bacteria isolated from tattoo inks, an azo dye-rich environment, decolorize a wide range of azo dyes.	Nho SW, Cui X, Kweon O, Jin J, Chen H, Moon MS, Kim SJ, Cerniglia CE.	Ann Microbiol	10.1186/s13213-021-01648-2	2021
	Screening of Endophytic Bacteria of Leucojum aestivum 'Gravety Giant' as a Potential Source of Alkaloids and as Antagonist to Some Plant Fungal Pathogens.	Munakata Y, Spina R, Slezack-Deschaumes S, Genestier J, Hehn A, Laurain-Mattar D.	Microorganisms	10.3390/microorganisms10102089	2022
	Paenibacillus larvae-Directed Bacteriophage HB10c2 and Its Application in American Foulbrood-Affected Honey Bee Larvae.	Beims H, Wittmann J, Bunk B, Sproer C, Rohde C, Gunther G, Rohde M, von der Ohe W, Steinert M.	Appl Environ Microbiol	10.1128/aem.00804-15	2015
	Strong pairwise interactions do not drive interactions in a plant leaf associated microbial community.	Hohn F, Chaudhry V, Bagci C, Mahmoudi M, Klenk E, Berg L, Stincone P, Hughes CC, Petras D, Brotz-Oesterhelt H, Kemen E, Ziemert N.	ISME Commun	10.1093/ismeco/ycae117	2025
Metabolism	Potential synergistic antimicrobial efficiency of binary combinations of essential oils against Bacillus cereus and Paenibacillus amylolyticus-Part A.	Ayari S, Shankar S, Follett P, Hossain F, Lacroix M	Microb Pathog	10.1016/j.micpath.2020.104008	2020
	Cellulolytic potential of a novel strain of Paenibacillus sp. isolated from the armored catfish Parotocinclus maculicauda gut.	de Castro AL, Vollu RE, Peixoto RS, Grigorevski-Lima AL, Coelho RR, Bon EP, Rosado AS, Seldin L	Braz J Microbiol	10.1590/S1517-838220110004000048	2011
Phylogeny	Paenibacillus seodonensis sp. nov., isolated from a plant of the genus Campanula.	Kang MS, Lee KE, Lee EY, Park SJ	J Microbiol	10.1007/s12275-018-8455-y	2018
Phylogeny	Paenibacillus panacihumi sp. nov., a potential plant growth-promoting bacterium isolated from ginseng-cultivated soil.	Kim CG, Kang JP, Huo Y, Chokkalingam M, Kim YJ, Kim DH, Yang DC	Arch Microbiol	10.1007/s00203-018-1517-z	2018
Phylogeny	Paenibacillus polysaccharolyticus sp. nov., a xylanolytic and cellulolytic bacteria isolated from leaves of Bamboo Phyllostachys aureosulcata.	Madhaiyan M, Poonguzhali S, Saravanan VS, Duraipandiyan V, Al-Dhabi NA, Kwon SW, Whitman WB	Int J Syst Evol Microbiol	10.1099/ijsem.0.001901	2017
Phylogeny	Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., psychrotolerant, xylan-degrading bacteria from Alaskan tundra.	Nelson DM, Glawe AJ, Labeda DP, Cann IK, Mackie RI	Int J Syst Evol Microbiol	10.1099/ijs.0.004572-0	2009
Phylogeny	Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine.	Roux V, Fenner L, Raoult D	Int J Syst Evol Microbiol	10.1099/ijs.0.65228-0	2008

References

#5758	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15211
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#116359	Collection of Institut Pasteur ; Curators of the CIP; CIP 103117
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Paenibacillus amylolyticus (DSM 15211, KACC 11263, LMG 21767)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004001025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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