Name: Paenibacillus amylolyticus DSM 15211
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11466

Type strain:

Species: Paenibacillus amylolyticus

Culture col. no.: DSM 15211, KACC 11263, LMG 21767, VTT E-02256, NRRL NRS-290, JCM 9906, ATCC 9995, CCUG 28514, CIP 103117, DSM 11730, DSM 11747, DSM 3034, IFO 13625, IFO 15957, KCTC 3455, LMG 11153, NBRC 13625, NBRC 15957, NRRL B-14940, NRRL B-377

Strain history: CIP <- 1988, L.K. Nakamura, NRRL: strain B-377 <- N.R. Smith: strain NRS-290, Bacillus circulans <- Kellerman, USDA, Bacillus amylolyticus

NCBI tax ID(s): 1451 (species)

SI-ID 297024

LMG 11153, ATCC 9995, CIP 103117, DSM 3034, IFO 13625, IFO 15876, IFO 15957, JCM 9906, NRRL B-14940, NRRL B-377, NRRL NRS-290, CCUG 28514, DSM 11730, DSM 11747, NRRL B-14945, NCIMB 13390, CCM 3891, DSM 15211, KCTC 3005, KCTC 3455, NBRC 13625, NBRC 15957, LMG 21767, CFBP 4261, NBRC 15876, BCRC 14684, CCRC 14684, KACC 11263, VTT E-021924, VTT E-022256

Special Collections

Other strains from Paenibacillus amylolyticus

Section

Paenibacillus amylolyticus DSM 15211 is a facultative anaerobe, spore-forming, Gram-negative bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus amylolyticus**
	Full Scientific Name (LPSN)	Paenibacillus amylolyticus (Nakamura 1984 ex Choukévitch 1911) Ash et al. 1994

Synonym

Bacillus amylolyticus

Information on morphological and physiological properties Morphology

[Ref.: #116359]	Gram stain	negative

[Ref.: #116359]	Cell shape	rod-shaped

[Ref.: #116359]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5758]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #5758]

Culture medium growth

[Ref.: #5758]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5758]

Culture medium composition

expand / minimize

[Ref.: #116359]

Culture medium

CIP Medium 72

[Ref.: #116359]

Culture medium growth

[Ref.: #116359]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116359]

Culture medium

CIP Medium 3

[Ref.: #116359]

Culture medium growth

[Ref.: #116359]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #5758]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116359]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.466
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #116359]	nitrate ChEBI	+	reduction
[Ref.: #116359]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116359]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116359]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116359]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116359]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #116359]	9169	not determinedn.d.	+	-	+/-	+	+	+	-	-	+	+	+	+	+	-	+/-	-	-	+	-	+/-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+/-	-	-	+/-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116359]	7375	-	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5758]	Sample type/isolated from	soil
[Ref.: #5758]	Country	USA
[Ref.: #5758]	Country ISO 3 Code	USA
[Ref.: #5758]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #116359]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5758]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116359]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus amylolyticus gene for 16S rRNA, partial sequence, strain: NBRC 15957	AB363743	1478	GenBank ENA	1451 tax ID
[Ref.: #67770]	Paenibacillus amylolyticus gene for 16S rRNA, partial sequence	AB073190	1503	GenBank ENA	1451 tax ID
[Ref.: #67770]	Paenibacillus amylolyticus DNA for 16S rRNA	D85396	1508	GenBank ENA	1451 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus amylolyticus NBRC 15957	GCA_004001025	contig	GenBank ENA	1451 tax ID
[Ref.: #66792]	Paenibacillus amylolyticus strain NBRC 15957	1451.36	wgs	PATRIC	1451 tax ID	*

[Ref.: #5758]	GC-content	46.3-46.6 mol%
[Ref.: #67770]	GC-content	46.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus amylolyticus strain NBRC 15957 PATRIC: 1451.36
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus amylolyticus strain NBRC 15957 PATRIC: 1451.36
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	65.763	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.568	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.466	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	53.924	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.179	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	86.373	no

Availability in culture collections External links

[Ref.: #5758]

Culture collection no.

DSM 15211, KACC 11263, LMG 21767, VTT E-02256, NRRL NRS-290, JCM 9906, ATCC 9995, CCUG 28514, CIP 103117, DSM 11730, DSM 11747, DSM 3034, IFO 13625, IFO 15957, KCTC 3455, LMG 11153, NBRC 13625, NBRC 15957, NRRL B-14940, NRRL B-377

[Ref.: #80700]

SI-ID 297024

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Potential synergistic antimicrobial efficiency of binary combinations of essential oils against Bacillus cereus and Paenibacillus amylolyticus-Part A.	Ayari S, Shankar S, Follett P, Hossain F, Lacroix M	Microb Pathog	10.1016/j.micpath.2020.104008	2020	*
Phylogeny	Paenibacillus seodonensis sp. nov., isolated from a plant of the genus Campanula.	Kang MS, Lee KE, Lee EY, Park SJ	J Microbiol	10.1007/s12275-018-8455-y	2018	*
Phylogeny	Paenibacillus panacihumi sp. nov., a potential plant growth-promoting bacterium isolated from ginseng-cultivated soil.	Kim CG, Kang JP, Huo Y, Chokkalingam M, Kim YJ, Kim DH, Yang DC	Arch Microbiol	10.1007/s00203-018-1517-z	2018	*
Phylogeny	Paenibacillus polysaccharolyticus sp. nov., a xylanolytic and cellulolytic bacteria isolated from leaves of Bamboo Phyllostachys aureosulcata.	Madhaiyan M, Poonguzhali S, Saravanan VS, Duraipandiyan V, Al-Dhabi NA, Kwon SW, Whitman WB	Int J Syst Evol Microbiol	10.1099/ijsem.0.001901	2017	*
Phylogeny	Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., psychrotolerant, xylan-degrading bacteria from Alaskan tundra.	Nelson DM, Glawe AJ, Labeda DP, Cann IK, Mackie RI	Int J Syst Evol Microbiol	10.1099/ijs.0.004572-0	2009	*
Phylogeny	Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine.	Roux V, Fenner L, Raoult D	Int J Syst Evol Microbiol	10.1099/ijs.0.65228-0	2008	*
	Cellulolytic potential of a novel strain of Paenibacillus sp. isolated from the armored catfish Parotocinclus maculicauda gut.	de Castro AL, Vollu RE, Peixoto RS, Grigorevski-Lima AL, Coelho RR, Bon EP, Rosado AS, Seldin L	Braz J Microbiol	10.1590/S1517-838220110004000048	2011	*

References

#5758

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15211

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80700

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297024.1 )

#116359 Collection of Institut Pasteur ; Curators of the CIP; CIP 103117
* These data were automatically processed and therefore are not curated

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Paenibacillus amylolyticus strain NBRC 15957

Paenibacillus amylolyticus strain NBRC 15957

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Change proposal