Cohnella xylanilytica (DSM 25239, KCTC 22294, MX15-2)

Name: Cohnella xylanilytica (DSM 25239, KCTC 22294, MX15-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11453

Type strain

Strain Designation MX15-2

Culture col. no. DSM 25239 KCTC 22294 MX15-2 PCU 309 TISTR 1891

NCBI tax ID(s) 557555

Special Collections DSMZ KCTC Literature strains

History DSMZ <- KCTC <- S. Tanasupawat, Chulalongkorn Univ., Thailand KCTC <- S Tanasupawat, Chulalongkorn Univ., Thailand

Links

Cohnella xylanilytica MX15-2 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405184

KCTC 22294,DSM 25239

@ref 20215

Last LPSN update 2026-05-29 08:27:34

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Cohnella

Species Cohnella xylanilytica

Full scientific name Cohnella xylanilytica Khianngam et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement
29648	positive	1.4-3.5 µm	0.3-0.5 µm	rod-shaped
67771				rod-shaped	peritrichous
67771	positive

Pigmentation

29648

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17953	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
17953	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17953	positive	growth	37
29648	positive	growth	20-50
29648	positive	optimum	30
67771	positive	growth	30-40

Culture pH

@ref	Ability	Type	PH	PH range
29648	positive	optimum	7
29648	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29648	facultative anaerobe
67771	facultative anaerobe
125439	facultative anaerobe	92.973

Spore formation

@ref	Type of spore	Confidence
29648
67771	endospore
125438		93.826

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29648	NaCl	positive	growth	3 %
29648	NaCl	positive	optimum	3 %

Observation

@ref	Observation
29648	aggregates in chains
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29648	22599 ChEBI	arabinose	+	carbon source
29648	4853 ChEBI	esculin	+	hydrolysis
29648	17234 ChEBI	glucose	+	carbon source
29648	25115 ChEBI	malate	+	carbon source
29648	17306 ChEBI	maltose	+	carbon source
29648	29864 ChEBI	mannitol	+	carbon source
29648	37684 ChEBI	mannose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29648	catalase	+	1.11.1.6
29648	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17953	soil	Nan Province	Thailand	THA	Asia
67771	From soil	Nan Province	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence HE866503 (>99% sequence identity) for Cohnella xylanilytica subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	104
Animal Samples	13
Plant Samples	15
Total Samples	144

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17953	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1421217v1 assembly for Cohnella xylanilytica DSM 25239	scaffold	GCA_014212175	557555.3	2995522105	557555	37.05

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
29648	Cohnella xylanilytica strain MX15-2 16S ribosomal RNA gene, partial sequence	FJ001841	1507	557555
17953	Cohnella xylanilytica partial 16S rRNA gene, clone K27	HE866500	1539	557555
17953	Cohnella xylanilytica partial 16S rRNA gene, clone K26	HE866501	1604	557555
17953	Cohnella xylanilytica partial 16S rRNA gene, clone K25	HE866502	1540	557555
17953	Cohnella xylanilytica partial 16S rRNA gene, clone K24	HE866503	1540	557555
124043	Cohnella xylanilytica strain PCU 309 16S ribosomal RNA gene, partial sequence.	MT760018	1360	557555
124043	Cohnella xylanilytica strain PCU 309 16S ribosomal RNA gene, partial sequence.	MT758149	1360	557555

GC content

@ref	GC-content (mol%)
29648	63
67771	63.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1421217v1 assembly for Cohnella xylanilytica DSM 25239
BV-BRC: 557555.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	variable	57.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.97	no
125439	motility	BacteriaNetⓘ	yes	74.09	no
125439	spore_formation	BacteriaNetⓘ	yes	71.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cohnella xylanilytica DSM 25239
NCBI: GCA_014212175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	68.04	yes
125438	anaerobic	anaerobicⓘ	no	93.34	yes
125438	aerobic	aerobicⓘ	yes	61.37	no
125438	spore-forming	spore-formingⓘ	yes	93.83	yes
125438	thermophilic	thermophileⓘ	no	90.64	yes
125438	flagellated	motile2+ⓘ	yes	85.09	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Description of Cohnella zeiphila sp. nov., a bacterium isolated from maize callus cultures.	Johnson ET, Dowd PF, Skory CD, Dunlap CA.	Antonie Van Leeuwenhoek	10.1007/s10482-020-01495-2	2021
Enzymology	Cohnella candidum sp. nov., radiation-resistant bacterium from soil.	Maeng S, Kim MK, Jang JH, Yi H, Subramani G.	Antonie Van Leeuwenhoek	10.1007/s10482-019-01233-3	2019
Genetics	Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root.	Kampfer P, Lipski A, Lamothe L, Clermont D, Criscuolo A, McInroy JA, Glaeser SP.	Arch Microbiol	10.1007/s00203-022-03225-w	2022
Phylogeny	Cohnella xylanilytica sp. nov. and Cohnella terrae sp. nov., xylanolytic bacteria from soil.	Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.017855-0	2010

References

#17953	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25239
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26037	IJSEM 2913 2010 ( DOI 10.1099/ijs.0.017855-0 , PubMed 20097800 )
#29648	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26037
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Cohnella xylanilytica (DSM 25239, KCTC 22294, MX15-2)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014212175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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