Name: Cohnella thailandensis S1-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11452

Type strain:

Species: Cohnella thailandensis

Strain Designation: S1-3

Culture col. no.: DSM 25241, KCTC 22296, PCU 306, TISTR 1890

Strain history: <- S Tanasupawat, Chulalongkorn Univ., Thailand

NCBI tax ID(s): 557557 (species)

SI-ID 405225

DSM 25241

Section

Cohnella thailandensis S1-3 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Cohnella*
	Species	**Cohnella thailandensis**
	Full Scientific Name (LPSN)	Cohnella thailandensis Khianngam et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29560]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #29560]	Cell length	1.2-2.5 µm

[Ref.: #29560]	Cell width	0.2-0.5 µm

[Ref.: #29560]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29560]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #29560]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17954]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #17954]

Culture medium growth

[Ref.: #17954]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17954]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17954]	growth	35 °C
[Ref.: #29560]	growth	20-50 °C
[Ref.: #29560]	optimum	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #17954]	Temperature range	mesophilic
[Ref.: #29560]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29560]			optimum	7
[Ref.: #29560]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29560]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #29560]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29560]		NaCl		growth	3	%
[Ref.: #29560]		NaCl		optimum	3	%

[Ref.: #29560]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29560]	arabinose ChEBI	+	carbon source
[Ref.: #29560]	cellobiose ChEBI	+	carbon source
[Ref.: #29560]	esculin ChEBI	+	hydrolysis
[Ref.: #29560]	fructose ChEBI	+	carbon source
[Ref.: #29560]	fucose ChEBI	+	carbon source
[Ref.: #29560]	galactose ChEBI	+	carbon source
[Ref.: #29560]	glucose ChEBI	+	carbon source
[Ref.: #29560]	glycogen ChEBI	+	carbon source
[Ref.: #29560]	lactose ChEBI	+	carbon source
[Ref.: #29560]	maltose ChEBI	+	carbon source
[Ref.: #29560]	mannitol ChEBI	+	carbon source
[Ref.: #29560]	mannose ChEBI	+	carbon source
[Ref.: #29560]	melibiose ChEBI	+	carbon source
[Ref.: #29560]	raffinose ChEBI	+	carbon source
[Ref.: #29560]	rhamnose ChEBI	+	carbon source
[Ref.: #29560]	ribose ChEBI	+	carbon source
[Ref.: #29560]	salicin ChEBI	+	carbon source
[Ref.: #29560]	sucrose ChEBI	+	carbon source
[Ref.: #29560]	trehalose ChEBI	+	carbon source
[Ref.: #29560]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29560]		catalase	+	1.11.1.6
[Ref.: #29560]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17954]	Sample type/isolated from	soil
[Ref.: #17954]	Geographic location (country and/or sea, region)	Nan province
[Ref.: #17954]	Country	Thailand
[Ref.: #17954]	Country ISO 3 Code	THA
[Ref.: #17954]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Muang district, Nan Province
[Ref.: #67771]	Country	Thailand
[Ref.: #67771]	Country ISO 3 Code	THA
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17954]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17954]	Cohnella thailandensis strain S1-3 16S ribosomal RNA gene, partial sequence	FJ001840	1531	ENA	557557 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cohnella thailandensis DSM 25241	GCA_017874075	contig	GenBank	557557 tax ID	*
[Ref.: #66792]	Cohnella thailandensis DSM 25241	GCA_014212135	contig	GenBank	557557 tax ID	*
[Ref.: #66792]	Cohnella thailandensis strain DSM 25241	557557.3	wgs	PATRIC	557557 tax ID	*
[Ref.: #66792]	Cohnella thailandensis strain DSM 25241	557557.4	wgs	PATRIC	557557 tax ID	*
[Ref.: #66792]	Cohnella thailandensis DSM 25241	2913440105	draft	JGI IMG/M	557557 tax ID	*

[Ref.: #29560]

GC-content

53.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cohnella thailandensis strain DSM 25241 PATRIC: 557557.3
[Ref.: #69480]	gram-positive	yes	87.809	no
[Ref.: #69480]	anaerobic	no	99.299	yes
[Ref.: #69480]	halophile	no	95.88	no
[Ref.: #69480]	spore-forming	yes	95.053	yes
[Ref.: #69480]	glucose-util	yes	89.624	yes
[Ref.: #69480]	aerobic	yes	79.023	yes
[Ref.: #69480]	thermophile	no	99.668	no
[Ref.: #69480]	motile	yes	91.146	yes
[Ref.: #69480]	flagellated	yes	84.564	no
[Ref.: #69480]	glucose-ferment	no	90.164	no

Availability in culture collections External links

[Ref.: #17954]

Culture collection no.

DSM 25241, KCTC 22296, PCU 306, TISTR 1890

[Ref.: #80690]

SI-ID 405225

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cohnella formosensis sp. nov., a xylanolytic bacterium isolated from the rhizosphere of Medicago sativa L.	Hameed A, Hung MH, Lin SY, Hsu YH, Liu YC, Shahina M, Lai WA, Huang HC, Young LS, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.045831-0	2013	*
Phylogeny	Cohnella thailandensis sp. nov., a xylanolytic bacterium from Thai soil.	Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.015859-0	2009	*

References

#17954

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25241

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29560

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25955 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80690

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405225.1 )

#25955

IJSEM 2284 2010 ( DOI 10.1099/ijs.0.015859-0 , PubMed 19915111 )

* These data were automatically processed and therefore are not curated

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Cohnella thailandensis strain DSM 25241

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