Brevibacillus panacihumi (DSM 22869, JCM 15085, KCTC 13206)

Name: Brevibacillus panacihumi (DSM 22869, JCM 15085, KCTC 13206)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11439

Type strain

Culture col. no. DSM 22869 JCM 15085 KCTC 13206 DCY 35

NCBI tax ID(s) 497735

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- KCTC <- D.-C. Yang; DCY35 JCM <-- D.-C. Yang DCY35. KCTC <- DC Yang, Kyunghee Univ.

Links

Brevibacillus panacihumi DSM 22869 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from surface soil of a ginseng field.

spore-forming Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404643

KCTC 13206,JCM 15085,DSM 22869

@ref 20215

Last LPSN update 2026-05-29 08:27:33

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Brevibacillus

Species Brevibacillus panacihumi

Full scientific name Brevibacillus panacihumi Kim et al. 2009

BacDive ID	Other strains from **Brevibacillus panacihumi** (2)	Type strain
157170	B. panacihumi CCUG 70015
161568	B. panacihumi JCM 15086

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
28907	positive	7 µm	0.45 µm	rod-shaped
67771				rod-shaped
67771	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16591	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830; with strain-specific modifications) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l MnSO4 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16591	positive	growth	30
28907	positive	growth	15-42
28907	positive	optimum	30
67770	positive	growth	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
28907	positive	optimum	7
28907	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
28907	aerobe
67771	aerobe
125439	facultative anaerobe	92.986

Spore formation

@ref	Type of spore	Confidence
28907
67771	endospore
125439		92.583

Halophily

@ref	Salt	Growth	Tested relation	Concentration
28907	NaCl	positive	growth	<2 %

Observation

@ref	Observation
28907	aggregates in clumps
67770	quinones: MK-7
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28907	30089 ChEBI	acetate	+	carbon source
28907	17128 ChEBI	adipate	+	carbon source
28907	16449 ChEBI	alanine	+	carbon source
28907	4853 ChEBI	esculin	+	hydrolysis
28907	24265 ChEBI	gluconate	+	carbon source
28907	25115 ChEBI	malate	+	carbon source
28907	29864 ChEBI	mannitol	+	carbon source
28907	37684 ChEBI	mannose	+	carbon source
28907	506227 ChEBI	N-acetylglucosamine	+	carbon source
28907	18401 ChEBI	phenylacetate	+	carbon source
28907	26271 ChEBI	proline	+	carbon source
28907	26546 ChEBI	rhamnose	+	carbon source
28907	31011 ChEBI	valerate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
28907	acid phosphatase	+	3.1.3.2
28907	alkaline phosphatase	+	3.1.3.1
28907	arylsulfatase	+	3.1.6.1
28907	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
16591	surface soil of a ginseng field	Republic of Korea	KOR	Asia
67770	Soil of a ginseng field	Republic of Korea	KOR	Asia
67771	From soil	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU383033 (>99% sequence identity) for Brevibacillus from Microbeatlas

Aquatic Samples	105
Soil Samples	304
Animal Samples	138
Plant Samples	99
Total Samples	646

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16591	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM371098v1 assembly for Brevibacillus panacihumi JCM 15085	contig	GCA_003710985	497735.10	2854289608	497735	53.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16591	Brevibacillus panacihumi strain DCY35 16S ribosomal RNA gene, partial sequence	EU383033	1473		497735

GC content

@ref	GC-content (mol%)	Method
16591	50.1
67770	50.1	high performance liquid chromatography (HPLC)
67771	50.05

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM371098v1 assembly for Brevibacillus panacihumi JCM 15085
NCBI: GCA_003710985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.99	no
125439	gram_stain	BacteriaNetⓘ	variable	74.55	no
125439	motility	BacteriaNetⓘ	yes	86.44	no
125439	spore_formation	BacteriaNetⓘ	yes	92.58	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevibacillus panacihumi strain JCM 15085
PATRIC: 497735.10

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.70	yes
125438	anaerobic	anaerobicⓘ	no	92.81	yes
125438	spore-forming	spore-formingⓘ	yes	88.57	yes
125438	aerobic	aerobicⓘ	yes	79.24	yes
125438	thermophilic	thermophileⓘ	no	88.61	yes
125438	flagellated	motile2+ⓘ	yes	83.39	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Brevibacillus ruminantium sp. nov., isolated from cow faeces.	Kim S, Heo J, Kwon SW, Lee D, Han BH, Hong SB, Kim Y.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006204	2023
Phylogeny	Brevibacillus panacihumi sp. nov., a beta-glucosidase-producing bacterium.	Kim MK, Sathiyaraj S, Pulla RK, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.001248-0	2009

References

#16591	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22869
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25346	IJSEM 1227 2009 ( DOI 10.1099/ijs.0.001248-0 , PubMed 19406823 )
#28907	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25346
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Brevibacillus panacihumi (DSM 22869, JCM 15085, KCTC 13206)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003710985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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