Name: Brevibacillus parabrevis DSM 8376
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11415

Type strain:

Species: Brevibacillus parabrevis

Culture col. no.: DSM 8376, ATCC 10027, CIP 103840, IFO 12334, JCM 8506, NBRC 12334, NRS 605, CGMCC 1.3101, LMG 15971, NCIMB 13346, NRRL NRS-605, VTT E-981069

Strain history: CIP <- 1993, H. Tagaki, Res. Lab. Higeta Shoyu Co., Japan <- ATCC, Bacillus brevis <- N.R. Smith <- J.R. Porter <- G. Bredmann

NCBI tax ID(s): 54914 (species)

SI-ID 8370

LMG 15971, ATCC 10027, CIP 103840, DSM 8376, IFO 12334, JCM 8506, NCIMB 13346, NRRL NRS-605, NBRC 12334, KCTC 3833, BCRC 15922, CCRC 15922, KACC 10926, VTT E-981069

Special Collections

Other strains from Brevibacillus parabrevis

Section

When using BacDive for research please cite our paper

Brevibacillus parabrevis DSM 8376 is a spore-forming, mesophilic bacterium of the family Paenibacillaceae.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Brevibacillus*
	Species	**Brevibacillus parabrevis**
	Full Scientific Name (LPSN)	Brevibacillus parabrevis (Takagi et al. 1993) Shida et al. 1996

Synonym

Bacillus parabrevis

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Motility	yes Confidence in %90.2

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3274]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #3274]

Culture medium growth

[Ref.: #3274]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3274]

Culture medium composition

expand / minimize

[Ref.: #37952]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37952]

Culture medium growth

[Ref.: #37952]

Culture medium composition

expand / minimize

[Ref.: #121540]

Culture medium

CIP Medium 3

[Ref.: #121540]

Culture medium growth

[Ref.: #121540]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #3274]	growth	30 °C
[Ref.: #37952]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

aerobe Confidence in %91.2

[Ref.: #125439]	Ability of spore formation	yes Confidence in %93.1
[Ref.: #125438]	Ability of spore formation	yes Confidence in %90.161

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence D78463 (>99% sequence identity) for Brevibacillus from Microbeatlas

Aquatic Samples	479
Soil Samples	119
Animal Samples	42
Plant Samples	13
Total Samples	653

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3274]	Pathogenicity (human)	yes, in single cases
[Ref.: #3274]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121540]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Brevibacillus parabrevis gene for 16S rRNA, partial sequence	AB006943	263	GenBank ENA	54914 tax ID	*
[Ref.: #20218]	Brevibacillus parabrevis gene for 16S rRNA, partial sequence, strain:IFO 12334T	AB112714	1486	GenBank ENA	54914 tax ID	*
[Ref.: #20218]	Brevibacillus parabrevis DNA for 16S ribosomal RNA	D78463	1419	GenBank ENA	54914 tax ID	*
[Ref.: #20218]	Brevibacillus parabrevis gene for 16S rRNA, partial sequence, strain: NBRC 12334	AB680274	1461	GenBank ENA	54914 tax ID	*
[Ref.: #124043]	Brevibacillus parabrevis strain IFO 12334 16S ribosomal RNA gene, partial sequence.	OQ874668	758	GenBank ENA	54914 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Brevibacillus parabrevis NBRC 12334	GCA_006539065	contig	GenBank ENA	54914 tax ID
[Ref.: #67770]	Brevibacillus parabrevis NRRL NRS 605	GCA_003710905	contig	GenBank ENA	54914 tax ID
[Ref.: #66792]	Brevibacillus parabrevis strain NBRC 12334	54914.8	wgs	PATRIC	54914 tax ID	*

[Ref.: #3274]

GC-content

51.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevibacillus parabrevis strain NBRC 12334 PATRIC: 54914.8
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	56.771	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.787	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	90.161	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	76.101	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	93.281	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	84.546	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brevibacillus parabrevis NBRC 12334 NCBI: GCA_006539065
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	93.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	90.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	85.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	91.2

Availability in culture collections External links

[Ref.: #3274]

Culture collection no.

DSM 8376, ATCC 10027, CIP 103840, IFO 12334, JCM 8506, NBRC 12334, NRS 605, CGMCC 1.3101, LMG 15971, NCIMB 13346, NRRL NRS-605, VTT E-981069

[Ref.: #80647]	SI-ID 8370	*
[Ref.: #80648]	SI-ID 312201	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevibacillus gelatini sp. nov., isolated from a hot spring.	Inan K, Ozer A, Ibrahim Guler H, Osman Belduz A, Canakci S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000780	2015	*

References

#3274

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8376

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37952 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80647

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID8370.1 )

#80648

#121540 Collection of Institut Pasteur ; Curators of the CIP; CIP 103840

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Brevibacillus parabrevis strain NBRC 12334

Brevibacillus parabrevis NBRC 12334

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