Aneurinibacillus aneurinilyticus (DSM 5562, ATCC 12856, CIP 104007)

Name: Aneurinibacillus aneurinilyticus (DSM 5562, ATCC 12856, CIP 104007)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11380

Type strain

Strain Designation Murayama

Culture col. no. DSM 5562 ATCC 12856 CIP 104007 IAM 1077 IFO 15521 7 more

NCBI tax ID(s) 649747 1391

Special Collections DSMZ JCM CIP

Links

Aneurinibacillus aneurinilyticus Murayama is an obligate aerobe, spore-forming, mesophilic prokaryote of the family Paenibacillaceae.

spore-forming Gram-positive motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 10735

LMG 16001,ATCC 12856,CIP 104007,DSM 5562,IAM 1077,IFO 15521,JCM 9024,LMG 15531,NCIMB 13690,NBRC 15521,NRRL NRS-1589,KCTC 3883

@ref 20215

Last LPSN update 2025-12-16 09:49:34

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Aneurinibacillus

Species Aneurinibacillus aneurinilyticus

Full scientific name Aneurinibacillus aneurinilyticus corrig. (Shida et al. 1994 ex Kimura and Aoyama 1952) Shida et al. 1996

Synonyms (3)

Bacillus aneurinilyticus
Bacillus aneurinolyticus
Aneurinibacillus aneurinolyticus

BacDive ID	Other strains from **Aneurinibacillus aneurinilyticus** (3)	Type strain
159181	A. aneurinilyticus WB01-D5-05-AE, DSM 105329
165554	A. aneurinilyticus JCM 7539, IFO 3115, LMG 16008, NBRC 3115, ...
165986	A. aneurinilyticus JCM 9023, ATCC 11376, CIP 104323, LMG 12387, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116380	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2190	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38159	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116380	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2190	positive	growth	30	mesophilic
38159	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
116380	positive	growth	30-55
116380	negative	growth	10

Culture pH

@ref	Ability	Type	PH
116380	positive	growth	6

Physiology and metabolism

Oxygen tolerance

116380

Oxygen toleranceobligate aerobe

Spore formation

116380

Spore formationyes

Compound production

67770

CompoundThiamine hydrolase

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116380	NaCl	positive	growth	0-4 %
116380	NaCl		growth	6 %
116380	NaCl		growth	8 %
116380	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
116380	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
116380	17632 ChEBI	nitrate	+	reduction
116380	17632 ChEBI	nitrate	-	respiration
116380	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116380	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
116380	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
116380	alcohol dehydrogenase	-	1.1.1.1
116380	amylase	-
116380	caseinase	-	3.4.21.50
116380	catalase	-	1.11.1.6
116380	DNase	+
116380	gelatinase	-
116380	lecithinase	+
116380	lysine decarboxylase	-	4.1.1.18
116380	ornithine decarboxylase	-	4.1.1.17
116380	oxidase	+
116380	urease	-	3.5.1.5

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116380	not determinedn.d.	+/-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
38159		Japan	JPN	Asia
67770	Human feces
116380	Human, Feces	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence X94194 (>99% sequence identity) for Aneurinibacillus from Microbeatlas

Aquatic Samples	218
Soil Samples	881
Animal Samples	736
Plant Samples	112
Total Samples	1947

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2190	1	Risk group (German classification) According to TRBA 466
116380	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM5047992v1 assembly for Aneurinibacillus aneurinilyticus NRS-1589	contig	GCA_050479925			1391	16.4
67770	ASM46638v1 assembly for Aneurinibacillus aneurinilyticus ATCC 12856	scaffold	GCA_000466385	649747.3	2563366762	649747

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Aneurinibacillus aneurinolyticus DNA for 16S ribosomal RNA	D78455	1422	649747
20218	Aneurinibacillus aneurinilyticus gene for 16S rRNA, partial sequence	AB101592	1489	649747
20218	Aneurinibacillus aneurinilyticus gene for 16S rRNA, partial sequence, strain:DSM 5562T	AB112724	1489	649747
20218	Aneurinibacillus aneurinilyticus isolate Aa15 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723616	545	649747
20218	B.aneurinolyticus 16S ribosomal RNA	X94194	1482	649747
20218	Aneurinibacillus aneurinilyticus gene for 16S rRNA, partial sequence	AB271755	1464	649747

GC content

@ref	GC-content (mol%)	Method
67770	42.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aneurinibacillus aneurinilyticus ATCC 12856
NCBI: GCA_000466385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.40	no
125439	motility	BacteriaNetⓘ	yes	87.30	no
125439	gram_stain	BacteriaNetⓘ	variable	86.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	83.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aneurinibacillus aneurinilyticus ATCC 12856
PATRIC: 649747.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.46	no
125438	anaerobic	anaerobicⓘ	no	92.31	yes
125438	spore-forming	spore-formingⓘ	yes	80.86	no
125438	aerobic	aerobicⓘ	yes	80.45	yes
125438	thermophilic	thermophileⓘ	no	84.96	yes
125438	flagellated	motile2+ⓘ	yes	77.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Purification of lipopeptide biosurfactant extracts obtained from a complex residual food stream using Tricine-SDS-PAGE electrophoresis.	Moldes AB, Alvarez-Chaver P, Vecino X, Cruz JM.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1199103	2023
	Biofilms protect Mycoplasma pulmonis cells from lytic effects of complement and gramicidin.	Simmons WL, Dybvig K.	Infect Immun	10.1128/iai.00440-07	2007

References

#2190	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5562
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38159	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116380	Collection of Institut Pasteur ; Curators of the CIP; CIP 104007
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Aneurinibacillus aneurinilyticus (DSM 5562, ATCC 12856, CIP 104007)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 50CHac

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_050479925

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media