Name: Ammoniphilus oxalivorans RAOx-FS
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11379

Type strain:

Species: Ammoniphilus oxalivorans

Strain Designation: RAOx-FS

Culture col. no.: DSM 11537, ATCC 700648, HAMBI 2284, CIP 105539

Strain history: CIP <- 1998, G.M. Zaitsev, Juvegroup Oy Ltd., Rovaniemi, Finland: strain RAOx-FS

NCBI tax ID(s): 66864 (species)

SI-ID 44055

ATCC 700648, DSM 11537, HAMBI 2284, CIP 105539

Section

Ammoniphilus oxalivorans RAOx-FS is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from rhizosphere of sorrel from a public garden.

Gram-positive
motile
rod-shaped
spore-forming
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Ammoniphilus*
	Species	**Ammoniphilus oxalivorans**
	Full Scientific Name (LPSN)	Ammoniphilus oxalivorans Zaitsev et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #121480]	Gram stain	positive

[Ref.: #121480]	Cell shape	rod-shaped

[Ref.: #121480]	Motility	yes

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4404]

Culture medium

OM-2 MEDIUM (DSMZ Medium 782)

[Ref.: #4404]

Culture medium growth

[Ref.: #4404]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4404]

Culture medium composition

expand / minimize

[Ref.: #121480]

Culture medium

CIP Medium 282

[Ref.: #121480]

Culture medium growth

[Ref.: #121480]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4404]		growth	30 °C
[Ref.: #121480]		growth	10-37 °C
[Ref.: #121480]	no	growth	45 °C
[Ref.: #121480]	no	growth	55 °C

[Ref.: #4404]	Temperature range	mesophilic
[Ref.: #121480]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121480]

Ability of spore formation

yes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121480]	hippurate ChEBI	-	hydrolysis
[Ref.: #121480]	nitrate ChEBI	-	reduction
[Ref.: #121480]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121480]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121480]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121480]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121480]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121480]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121480]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121480]	tryptophan deaminase	-
[Ref.: #121480]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121480]	8781	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4404]	Sample type/isolated from	rhizosphere of sorrel (Rumex acetosa) from a public garden
[Ref.: #4404]	Host species	Rumex acetosa
[Ref.: #4404]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #4404]	Country	Finland
[Ref.: #4404]	Country ISO 3 Code	FIN
[Ref.: #4404]	Continent	Europe

[Ref.: #121480]	Sample type/isolated from	Environment, Rhizosphere of sorrel, Rumex acetosa
[Ref.: #121480]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #121480]	Country	Finland
[Ref.: #121480]	Country ISO 3 Code	FIN
[Ref.: #121480]	Continent	Europe
[Ref.: #121480]	Isolation date	1994
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Garden
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4404]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121480]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Ammoniphilus oxalivorans 16S rRNA gene, strain RAOx-FS	Y14580	1497	ENA	66864 tax ID	*

Availability in culture collections External links

[Ref.: #4404]

Culture collection no.

DSM 11537, ATCC 700648, HAMBI 2284, CIP 105539

[Ref.: #80609]

SI-ID 44055

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ammoniphilus resinae sp. nov., an endospore-forming bacterium isolated from resin fragments.	Lin SY, Wu YH, Hameed A, Liu YC, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001137	2016	*
Phylogeny	New aerobic ammonium-dependent obligately oxalotrophic bacteria: description of Ammoniphilus oxalaticus gen. nov., sp. nov. and Ammoniphilus oxalivorans gen. nov., sp. nov.	Zaitsev GM, Tsitko IV, Rainey FA, Trotsenko YA, Uotila JS, Stackebrandt E, Salkinoja-Salonen MS	Int J Syst Bacteriol	10.1099/00207713-48-1-151	1998	*

References

#4404

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11537

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68382

Automatically annotated from API zym .

#80609

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44055.1 )

#121480 Collection of Institut Pasteur ; Curators of the CIP; CIP 105539
* These data were automatically processed and therefore are not curated

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