Name: Glaciimonas immobilis Cr9-30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11376

Type strain:

Species: Glaciimonas immobilis

Strain Designation: Cr9-30

Culture col. no.: DSM 23240, LMG 25547, UCCCB32

Strain history: R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; Cr9-30

NCBI tax ID(s): 728004 (species)

SI-ID 368629

LMG 25547, DSM 23240

Section

Glaciimonas immobilis Cr9-30 is a psychrophilic, Gram-negative bacterium that was isolated from glacier cryoconite.

Gram-negative
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Glaciimonas*
	Species	**Glaciimonas immobilis**
	Full Scientific Name (LPSN)	Glaciimonas immobilis Zhang et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

Multimedia content

[Ref.: #16705]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16705]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16705]

Culture medium growth

[Ref.: #16705]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16705]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16705]	growth	1-20 °C
[Ref.: #67772]	minimum	1 °C
[Ref.: #67772]	optimum	10 °C
[Ref.: #67772]	maximum	20 °C

[Ref.: #16705]	Temperature range	psychrophilic
[Ref.: #67772]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #67772]			maximum	8.0
[Ref.: #67772]			minimum	6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16705]	Sample type/isolated from	glacier cryoconite
[Ref.: #16705]	Geographic location (country and/or sea, region)	Tyrol, Oetztaler Alps, Tiefenbachferner glacier
[Ref.: #16705]	Country	Austria
[Ref.: #16705]	Country ISO 3 Code	AUT
[Ref.: #16705]	Continent	Europe

[Ref.: #67772]	Sample type/isolated from	Alpine glacier (Tiefenbachferner glacier) cryoconite
[Ref.: #67772]	Sampling date	2006
[Ref.: #67772]	Geographic location (country and/or sea, region)	Tyrol, Ötztal
[Ref.: #67772]	Country	Austria
[Ref.: #67772]	Country ISO 3 Code	AUT
[Ref.: #67772]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Geologic
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU441679 (>99% sequence identity) for Glaciimonas immobilis from Microbeatlas

Aquatic Samples	167
Soil Samples	271
Animal Samples	166
Plant Samples	129
Total Samples	733

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16705]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16705]	Glaciimonas immobilis strain Cr9-30 16S ribosomal RNA gene, partial sequence	GU441679	1525	ENA	728004 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glaciimonas immobilis DSM 23240	GCA_011947285	scaffold	GenBank	728004 tax ID	*
[Ref.: #66792]	Glaciimonas immobilis DSM 23240	GCA_014202815	scaffold	GenBank	728004 tax ID	*
[Ref.: #66792]	Glaciimonas immobilis strain DSM 23240	728004.4	wgs	PATRIC	728004 tax ID	*
[Ref.: #66792]	Glaciimonas immobilis strain DSM 23240	728004.5	wgs	PATRIC	728004 tax ID	*
[Ref.: #66792]	Glaciimonas immobilis DSM 23240	2861618822	draft	JGI IMG/M	728004 tax ID	*

[Ref.: #16705]

GC-content

51.0 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glaciimonas immobilis DSM 23240 NCBI: GCA_011947285.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glaciimonas immobilis DSM 23240 NCBI: GCA_011947285.1
[Ref.: #69480]	motile	no	52.146	no
[Ref.: #69480]	flagellated	no	83.791	no
[Ref.: #69480]	gram-positive	no	98.757	no
[Ref.: #69480]	anaerobic	no	99.195	no
[Ref.: #69480]	aerobic	yes	92.285	no
[Ref.: #69480]	halophile	no	94.314	no
[Ref.: #69480]	spore-forming	no	91.945	no
[Ref.: #69480]	thermophile	no	99.382	yes
[Ref.: #69480]	glucose-util	yes	80.941	no
[Ref.: #69480]	glucose-ferment	no	88.734	no

Availability in culture collections External links

[Ref.: #16705]

Culture collection no.

DSM 23240, LMG 25547, UCCCB32

[Ref.: #80606]

SI-ID 368629

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glaciimonas alpina sp. nov. isolated from alpine glaciers and reclassification of Glaciimonas immobilis Cr9-12 as the type strain of Glaciimonas alpina sp. nov.	Frasson D, Udovicic M, Frey B, Lapanje A, Zhang DC, Margesin R, Sievers M	Int J Syst Evol Microbiol	10.1099/ijs.0.000174	2015	*
Phylogeny	Glaciimonas singularis sp. nov., isolated from a uranium mine wastewater treatment plant.	Chung AP, Tiago I, Nobre MF, Verissimo A, Morais PV	Int J Syst Evol Microbiol	10.1099/ijs.0.046581-0	2012	*
Phylogeny	Glaciimonas immobilis gen. nov., sp. nov., a member of the family Oxalobacteraceae isolated from alpine glacier cryoconite.	Zhang DC, Redzic M, Schinner F, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.028001-0	2010	*

References

#16705

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23240

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80606

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID368629.1 )

* These data were automatically processed and therefore are not curated

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Glaciimonas immobilis DSM 23240

Glaciimonas immobilis DSM 23240

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