Name: Noviherbaspirillum soli SUEMI10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11372

Type strain:

Species: Noviherbaspirillum soli

Strain Designation: SUEMI10

Culture col. no.: DSM 24276, CECT 7840, LMG 26149

Strain history: <- E. Velázquez Pérez, Depart. Microbiol. y Gen., Univ. Salamanca, Spain; SUEMI10 <- R. Rivas

NCBI tax ID(s): 1064518 (species)

SI-ID 371544

LMG 26149, CECT 7840, DSM 24276

Section

Noviherbaspirillum soli SUEMI10 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Noviherbaspirillum*
	Species	**Noviherbaspirillum soli**
	Full Scientific Name (LPSN)	Noviherbaspirillum soli (Carro et al. 2012) Lin et al. 2013

Synonym

Herbaspirillum soli

Information on morphological and physiological properties Morphology

[Ref.: #30231]	Gram stain	negative

[Ref.: #30231]	Cell length	1.9 µm

[Ref.: #30231]	Cell width	1.2 µm

[Ref.: #30231]	Cell shape	rod-shaped

[Ref.: #30231]	Motility	yes

[Ref.: #30231]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17606]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #17606]

Culture medium growth

[Ref.: #17606]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17606]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17606]	growth	28 °C
[Ref.: #30231]	growth	15-37 °C
[Ref.: #30231]	optimum	28 °C

[Ref.: #17606]	Temperature range	mesophilic
[Ref.: #30231]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30231]			optimum	7
[Ref.: #30231]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30231]

Oxygen tolerance

aerobe

[Ref.: #30231]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30231]		NaCl		growth	1.50	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30231]	adipate ChEBI	+	carbon source
[Ref.: #30231]	citrate ChEBI	+	carbon source
[Ref.: #30231]	gluconate ChEBI	+	carbon source
[Ref.: #30231]	malate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30231]	catalase	+	1.11.1.6
[Ref.: #30231]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30231]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17606]	Sample type/isolated from	soil
[Ref.: #17606]	Geographic location (country and/or sea, region)	Canary Islands, Tenerife
[Ref.: #17606]	Country	Spain
[Ref.: #17606]	Country ISO 3 Code	ESP
[Ref.: #17606]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ830498 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	1801
Soil Samples	2964
Animal Samples	984
Plant Samples	3499
Total Samples	9248

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17606]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17606]	Noviherbaspirillum soli strain SUEMI10 16S ribosomal RNA gene, partial sequence	HQ830498	1525	ENA	1064518 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Noviherbaspirillum soli SUEMI10	GCA_015352955	contig	GenBank	1064518 tax ID	*

[Ref.: #17606]	GC-content	63.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #17606]	GC-content	61.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30231]	GC-content	61.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Noviherbaspirillum soli SUEMI10 NCBI: GCA_015352955.1
[Ref.: #69480]	motile	yes	85.596	no
[Ref.: #69480]	flagellated	yes	60.186	no
[Ref.: #69480]	gram-positive	no	98.622	yes
[Ref.: #69480]	anaerobic	no	98.269	no
[Ref.: #69480]	aerobic	yes	88.97	yes
[Ref.: #69480]	halophile	no	90.974	yes
[Ref.: #69480]	spore-forming	no	93.323	yes
[Ref.: #69480]	thermophile	no	98.109	no
[Ref.: #69480]	glucose-util	no	50	no
[Ref.: #69480]	glucose-ferment	no	90.551	no

Availability in culture collections External links

[Ref.: #17606]

Culture collection no.

DSM 24276, CECT 7840, LMG 26149

[Ref.: #80602]

SI-ID 371544

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Noviherbaspirillum agri sp. nov., isolated from reclaimed grassland soil, and reclassification of Herbaspirillum massiliense (Lagier et al., 2014) as Noviherbaspirillum massiliense comb. nov.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001747	2017	*
Phylogeny	Noviherbaspirillum suwonense sp. nov., isolated from an air sample.	Kim SJ, Moon JY, Weon HY, Hong SB, Seok SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.057372-0	2014	*
Phylogeny	Description of Noviherbaspirillum malthae gen. nov., sp. nov., isolated from an oil-contaminated soil, and proposal to reclassify Herbaspirillum soli, Herbaspirillum aurantiacum, Herbaspirillum canariense and Herbaspirillum psychrotolerans as Noviherbaspirillum soli comb. nov., Noviherbaspirillum aurantiacum comb. nov., Noviherbaspirillum canariense comb. nov. and Noviherbaspirillum psychrotolerans comb. nov. based on polyphasic analysis.	Lin SY, Hameed A, Arun AB, Liu YC, Hsu YH, Lai WA, Rekha PD, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.048231-0	2013	*
Phylogeny	Herbaspirillum canariense sp. nov., Herbaspirillum aurantiacum sp. nov. and Herbaspirillum soli sp. nov., isolated from volcanic mountain soil, and emended description of the genus Herbaspirillum.	Carro L, Rivas R, Leon-Barrios M, Gonzalez-Tirante M, Velazquez E, Valverde A	Int J Syst Evol Microbiol	10.1099/ijs.0.031336-0	2011	*

References

#17606

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24276

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30231

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26574 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80602

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371544.1 )

#26574

IJSEM 1300 2012 ( DOI 10.1099/ijs.0.031336-0 , PubMed 21788228 )

* These data were automatically processed and therefore are not curated

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