Name: Herbaspirillum chlorophenolicum CPW301
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11366

Type strain:

Species: Herbaspirillum chlorophenolicum

Strain Designation: CPW301

Culture col. no.: DSM 17796, IAM 15024, JCM 21487, KCTC 12096, NBRC 102525, CCUG 52898, CIP 108432, UCCCB8

Strain history: CIP <- 2004, KCTC <- S.T. Lee, KAIST, Korea: strain CPW301

NCBI tax ID(s): 1349766 (strain), 211589 (species)

SI-ID 107096

KCTC 12096, IAM 15024, LMG 22686, CIP 108432, CCUG 52898, JCM 21487, DSM 17796, NBRC 102525

Section

Herbaspirillum chlorophenolicum CPW301 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil sediment collected at a stream near an industrial region.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herbaspirillum*
	Species	**Herbaspirillum chlorophenolicum**
	Full Scientific Name (LPSN)	Herbaspirillum chlorophenolicum Im et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30000]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #118240]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #30000]	Cell length	2.3 µm

[Ref.: #30000]	Cell width	0.7 µm

[Ref.: #30000]	Cell shape	rod-shaped
[Ref.: #118240]	Cell shape	rod-shaped

[Ref.: #30000]	Motility	yes
[Ref.: #118240]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.035

[Ref.: #118240]	Pigment production	no
[Ref.: #118240]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7191]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7191]

Culture medium growth

[Ref.: #7191]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7191]

Culture medium composition

expand / minimize

[Ref.: #33241]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #33241]

Culture medium growth

[Ref.: #33241]

Culture medium composition

expand / minimize

[Ref.: #118240]

Culture medium

CIP Medium 328

[Ref.: #118240]

Culture medium growth

[Ref.: #118240]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7191]		growth	28 °C
[Ref.: #30000]		optimum	30 °C
[Ref.: #33241]		growth	30 °C
[Ref.: #59716]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #67771]		growth	30 °C
[Ref.: #67772]		optimum	28 °C
[Ref.: #118240]		growth	5-30 °C
[Ref.: #118240]	no	growth	37 °C
[Ref.: #118240]	no	growth	41 °C

[Ref.: #7191]	Temperature range	mesophilic
[Ref.: #30000]	Temperature range	mesophilic
[Ref.: #33241]	Temperature range	mesophilic
[Ref.: #59716]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	mesophilic
[Ref.: #118240]	Temperature range	mesophilic
[Ref.: #118240]	Temperature range	thermophilic

		pH
[Ref.: #67772]	maximum	8.0
[Ref.: #67772]	minimum	6.0
[Ref.: #30000]	optimum	6.5
[Ref.: #30000]	growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30000]	Oxygen tolerance	aerobe
[Ref.: #59716]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #118240]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #118240]	NaCl		growth	0-4	%
[Ref.: #118240]	NaCl	no	growth	6	%
[Ref.: #118240]	NaCl	no	growth	8	%
[Ref.: #118240]	NaCl	no	growth	10	%

[Ref.: #67770]	Observation	quinones: Q-8
[Ref.: #67771]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118240]	citrate ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118240]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30000]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118240]	nitrate ChEBI	-	reduction
[Ref.: #118240]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #118240]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30000]	urea ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #118240]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #118240]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118240]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #118240]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #118240]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118240]	caseinase	-	3.4.21.50
[Ref.: #30000]	catalase	+	1.11.1.6
[Ref.: #118240]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30000]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #118240]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #118240]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #118240]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #118240]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118240]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #118240]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118240]	oxidase	-
[Ref.: #118240]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118240]	tryptophan deaminase	-
[Ref.: #118240]	tween esterase	+
[Ref.: #30000]	urease	+	3.5.1.5
[Ref.: #118240]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #59716]	8362	-	-	-	-	-	-	-	-	+	+	-	+	+	-	+	+	-	+	+	+	+

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #118240]	11300	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #59716]	4303	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-
[Ref.: #118240]	11183	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7191]	Sample type/isolated from	soil sediment collected at a stream near an industrial region
[Ref.: #7191]	Geographic location (country and/or sea, region)	Cheongju
[Ref.: #7191]	Country	Republic of Korea
[Ref.: #7191]	Country ISO 3 Code	KOR
[Ref.: #7191]	Continent	Asia

[Ref.: #59716]	Sample type/isolated from	Soil sediment
[Ref.: #59716]	Geographic location (country and/or sea, region)	industrial region of Cheongju
[Ref.: #59716]	Country	Republic of Korea
[Ref.: #59716]	Country ISO 3 Code	KOR
[Ref.: #59716]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Industrial stream near Chungju industry complex
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #67772]	Sample type/isolated from	Soil sediment collected from a stream near an industrial region
[Ref.: #67772]	Sampling date	1997
[Ref.: #67772]	Geographic location (country and/or sea, region)	North Chungcheong Province, Cheongju
[Ref.: #67772]	Country	Republic of Korea
[Ref.: #67772]	Country ISO 3 Code	KOR
[Ref.: #67772]	Continent	Asia
[Ref.: #67772]	Geographic location	36.6333°/127.4830°

[Ref.: #118240]	Sample type/isolated from	Environment, Soil
[Ref.: #118240]	Geographic location (country and/or sea, region)	Cheongju, Chungbuk
[Ref.: #118240]	Country	Republic of Korea
[Ref.: #118240]	Country ISO 3 Code	KOR
[Ref.: #118240]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	-
#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Sediment
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681859 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	163
Soil Samples	183
Animal Samples	75
Plant Samples	429
Total Samples	850

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7191]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1
[Ref.: #118240]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7191]	Herbaspirillum chlorophenolicum gene for 16S rRNA, partial sequence	AB094401	1474	ENA	211589 tax ID
[Ref.: #20218]	Herbaspirillum chlorophenolicum gene for 16S rRNA, partial sequence, strain: NBRC 102525	AB681859	1458	ENA	211589 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbaspirillum chlorophenolicum NBRC 102525	GCA_001571165	contig	GenBank	1349766 tax ID
[Ref.: #67770]	Herbaspirillum chlorophenolicum CPW301	GCA_001189955	contig	GenBank	211589 tax ID
[Ref.: #66792]	Herbaspirillum chlorophenolicum NBRC 102525	1349766.3	wgs	PATRIC	1349766 tax ID	*
[Ref.: #66792]	Herbaspirillum chlorophenolicum NBRC 102525	2731957620	draft	JGI IMG/M	1349766 tax ID	*
[Ref.: #66792]	Herbaspirillum chlorophenolicum CPW301	2645727693	draft	JGI IMG/M	211589 tax ID	*

[Ref.: #7191]	GC-content	61.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30000]	GC-content	61.3 mol%
[Ref.: #67771]	GC-content	60.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Herbaspirillum chlorophenolicum NBRC 102525 PATRIC: 1349766.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Herbaspirillum chlorophenolicum NBRC 102525 PATRIC: 1349766.3
[Ref.: #69480]	motile	yes	90.477	yes
[Ref.: #69480]	gram-positive	no	98.845	no
[Ref.: #69480]	anaerobic	no	99.353	yes
[Ref.: #69480]	halophile	no	94.441	no
[Ref.: #69480]	spore-forming	no	94.971	no
[Ref.: #69480]	glucose-util	yes	83.02	yes
[Ref.: #69480]	flagellated	no	50	no
[Ref.: #69480]	thermophile	no	98.984	no
[Ref.: #69480]	aerobic	yes	87.209	yes
[Ref.: #69480]	glucose-ferment	no	89.402	yes

Availability in culture collections External links

[Ref.: #7191]

Culture collection no.

DSM 17796, IAM 15024, JCM 21487, KCTC 12096, NBRC 102525, CCUG 52898, CIP 108432, UCCCB8

[Ref.: #80597]

SI-ID 107096

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Herbaspirillum piri sp. nov., isolated from bark of a pear tree.	Xu G, Chang J, Xue H, Guo M, Piao CG, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003050	2018	*
Phylogeny	Herbaspirillum robiniae sp. nov., isolated from root nodules of Robinia pseudoacacia in a lead-zinc mine.	Fan MC, Guo YQ, Zhang LP, Zhu YM, Chen WM, Lin YB, Wei GH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002666	2018	*
Phylogeny	Herbaspirillum chlorophenolicum sp. nov., a 4-chlorophenol-degrading bacterium.	Im WT, Bae HS, Yokota A, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.02812-0	2004	*

References

#7191

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17796

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30000

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26365 (see below)

#33241 ; Curators of the CIP;
#59716 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52898

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#68369

Automatically annotated from API 20NE .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80597

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID107096.1 )

#118240 Collection of Institut Pasteur ; Curators of the CIP; CIP 108432

#26365

IJSEM 851 2004 ( DOI 10.1099/ijs.0.02812-0 , PubMed 15143035 )

* These data were automatically processed and therefore are not curated

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Herbaspirillum chlorophenolicum NBRC 102525

Herbaspirillum chlorophenolicum NBRC 102525

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