Name: Herbaspirillum frisingense DSM 13128
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11361

Type strain:

Species: Herbaspirillum frisingense

Culture col. no.: DSM 13128, CCUG 47444, GSF 30, JCM 21445, IAM 14974, NBRC 102522

Strain history: IAM 14974 <-- DSM 13128 <-- G. Kirchhof et al. GSF30.

NCBI tax ID(s): 92645 (species)

SI-ID 49410

DSM 13128, LMG 21446, KCTC 12900, CCUG 47444, IAM 14974, NBRC 102522, JCM 21445, LMG 23164

Other strains from Herbaspirillum frisingense

H. frisingense 84 B, DSM 13129
H. frisingense Mb 11, DSM 13130
H. frisingense CCUG 53512

Section

Herbaspirillum frisingense DSM 13128 is an aerobe, mesophilic bacterium that was isolated from Miscanthus sacchariflorus washed leaves.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herbaspirillum*
	Species	**Herbaspirillum frisingense**
	Full Scientific Name (LPSN)	Herbaspirillum frisingense Kirchhof et al. 2001

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4914]

Culture medium

HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)

[Ref.: #4914]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #4914]

Culture medium composition

expand / minimize

[Ref.: #4914]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4914]

Culture medium growth

[Ref.: #4914]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4914]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4914]	growth	35 °C
[Ref.: #57691]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #4914]	Temperature range	mesophilic
[Ref.: #57691]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57691]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4914]	Sample type/isolated from	Miscanthus sacchariflorus washed leaves
[Ref.: #4914]	Host species	Miscanthus sacchariflorus
[Ref.: #4914]	Geographic location (country and/or sea, region)	Bavaria, fields of LPG Freising
[Ref.: #4914]	Country	Germany
[Ref.: #4914]	Country ISO 3 Code	DEU
[Ref.: #4914]	Continent	Europe

[Ref.: #57691]	Sample type/isolated from	Miscanthus sacchariflorus washed leaves
[Ref.: #57691]	Geographic location (country and/or sea, region)	Bavaria
[Ref.: #57691]	Country	Germany
[Ref.: #57691]	Country ISO 3 Code	DEU
[Ref.: #57691]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Roots and aerial parts (stems, leaves)
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681856 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	95
Soil Samples	135
Animal Samples	109
Plant Samples	195
Total Samples	534

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4914]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Herbaspirillum frisingense 16S rRNA gene, strain GSF30	AJ238358	1466	ENA	864073 tax ID	*
[Ref.: #20218]	Herbaspirillum frisingense gene for 16S rRNA, partial sequence, strain: NBRC 102522	AB681856	1458	ENA	92645 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbaspirillum frisingense GSF30	GCA_000300975	contig	GenBank	864073 tax ID

[Ref.: #67770]

GC-content

64 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Herbaspirillum frisingense GSF30 GSF30 NCBI: GCA_000300975.2
[Ref.: #69480]	motile	yes	91.892	no
[Ref.: #69480]	flagellated	no	53.268	no
[Ref.: #69480]	gram-positive	no	99.083	no
[Ref.: #69480]	anaerobic	no	99.034	yes
[Ref.: #69480]	aerobic	yes	88.755	yes
[Ref.: #69480]	halophile	no	95.753	no
[Ref.: #69480]	spore-forming	no	93.863	no
[Ref.: #69480]	glucose-util	yes	83.725	no
[Ref.: #69480]	thermophile	no	99.391	yes
[Ref.: #69480]	glucose-ferment	no	89.626	no

Availability in culture collections External links

[Ref.: #4914]

Culture collection no.

DSM 13128, CCUG 47444, GSF 30, JCM 21445, IAM 14974, NBRC 102522

[Ref.: #80592]

SI-ID 49410

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	High Genomic Identity between Clinical and Environmental Strains of Herbaspirillum frisingense Suggests Pre-Adaptation to Different Hosts and Intrinsic Resistance to Multiple Drugs.	Oliveira WK, Avila HL, Tadra MZ, Cardoso RL, Fadel-Pichet CMT, de Souza EM, de Oliveira Pedrosa F, Faoro H	Antibiotics (Basel)	10.3390/antibiotics10111409	2021	*
Pathogenicity	Root ethylene signalling is involved in Miscanthus sinensis growth promotion by the bacterial endophyte Herbaspirillum frisingense GSF30(T).	Straub D, Yang H, Liu Y, Tsap T, Ludewig U	J Exp Bot	10.1093/jxb/ert276	2013	*
Phylogeny	Paraherbaspirillum soli gen. nov., sp. nov. isolated from soil.	Anandham R, Kim SJ, Moon JY, Weon HY, Kwon SW	J Microbiol	10.1007/s12275-013-2563-5	2013	*
Metabolism	Endophytic root colonization of gramineous plants by Herbaspirillum frisingense.	Rothballer M, Eckert B, Schmid M, Fekete A, Schloter M, Lehner A, Pollmann S, Hartmann A	FEMS Microbiol Ecol	10.1111/j.1574-6941.2008.00582.x	2008	*
Phylogeny	Herbaspirillum frisingense sp. nov., a new nitrogen-fixing bacterial species that occurs in C4-fibre plants.	Kirchhof G, Eckert B, Stoffels M, Baldani JI, Reis VM, Hartmann A	Int J Syst Evol Microbiol	10.1099/00207713-51-1-157	2001	*
	Structural and genetic characterization of the colitose-containing O-specific polysaccharide from the lipopolysaccharide of Herbaspirillum frisingense GSF30(T).	Velichko NS, Kokoulin MS, Sigida EN, Kuchur PD, Komissarov AS, Kovtunov EA, Fedonenko YP	Int J Biol Macromol	10.1016/j.ijbiomac.2020.06.093	2020	*
	The genome of the endophytic bacterium H. frisingense GSF30(T) identifies diverse strategies in the Herbaspirillum genus to interact with plants.	Straub D, Rothballer M, Hartmann A, Ludewig U	Front Microbiol	10.3389/fmicb.2013.00168	2013	*

References

#4914

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13128

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#57691 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47444
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80592

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49410.1 )

* These data were automatically processed and therefore are not curated

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Herbaspirillum frisingense GSF30 GSF30

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