Name: Herbaspirillum autotrophicum SA 32
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11351

Type strain:

Species: Herbaspirillum autotrophicum

Strain Designation: SA 32

Culture col. no.: DSM 732, ATCC 29984, CCUG 12808, LMG 4326, CIP 107295, IAM 14942, NBRC 15327, JCM 21424, IFO 15327, VKM B-1394, UCCCB7

Strain history: C. Schweizer and M. Aragno, Institute of Botany, University of Neuchâtel [Aquaspirillum autotrophicum Aragno and Schlegel 1978 (Approved Lists 1980) - homotypic synonym, validly published]

NCBI tax ID(s): 180195 (species)

Other strains from Herbaspirillum autotrophicum

H. autotrophicum SA 33, CCUG 19112, LMG 7377, DSM ...

Section

Herbaspirillum autotrophicum SA 32 is an aerobe, mesophilic bacterium that was isolated from eutrophic lake water.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herbaspirillum*
	Species	**Herbaspirillum autotrophicum**
	Full Scientific Name (PNU)	Herbaspirillum autotrophicum (Aragno and Schlegel 1978) Ding and Yokota 2004

Synonym

Aquaspirillum autotrophicum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33759]

Culture medium

MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genus

[Ref.: #33759]

Culture medium growth

[Ref.: #33759]

Culture medium composition

expand / minimize

[Ref.: #377]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)

[Ref.: #377]

Culture medium growth

[Ref.: #377]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #377]

Culture medium composition

expand / minimize

[Ref.: #377]

Culture medium

SPIRILLUM MEDIUM (DSMZ Medium 37)

[Ref.: #377]

Culture medium growth

[Ref.: #377]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #377]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #377]	growth	28 °C
[Ref.: #33759]	growth	25 °C
[Ref.: #45831]	growth	25-30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67772]	maximum	10 °C
[Ref.: #67772]	optimum	28 °C
[Ref.: #67772]	minimum	35 °C

[Ref.: #377]	Temperature range	mesophilic
[Ref.: #33759]	Temperature range	mesophilic
[Ref.: #45831]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	psychrophilic
[Ref.: #67772]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #45831]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #377]	Sample type/isolated from	eutrophic lake water
[Ref.: #377]	Country	Switzerland
[Ref.: #377]	Country ISO 3 Code	CHE
[Ref.: #377]	Continent	Europe

[Ref.: #45831]	Sample type/isolated from	Eutrophic lake water
[Ref.: #45831]	Country	Switzerland
[Ref.: #45831]	Country ISO 3 Code	CHE
[Ref.: #45831]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Eutrophic lake water

[Ref.: #67772]	Sample type/isolated from	Eutrophic lake water
[Ref.: #67772]	Sampling date	1976
[Ref.: #67772]	Geographic location (country and/or sea, region)	Neuchâtel, Saint-Blaise
[Ref.: #67772]	Country	Switzerland
[Ref.: #67772]	Country ISO 3 Code	CHE
[Ref.: #67772]	Continent	Europe
[Ref.: #67772]	Geographic location	47.0167°/6.9833°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB074524 (>99% sequence identity) for Herbaspirillum autotrophicum from Microbeatlas

Aquatic Samples	22
Soil Samples	6
Animal Samples	12
Plant Samples	13
Total Samples	53

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #377]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Herbaspirillum autotrophicum gene for 16S rRNA, partial sequence, strain: NBRC 15327	AB680836	1458	ENA	180195 tax ID	*
[Ref.: #377]	Aquaspirillum autotrophicum gene for 16S rRNA, partial sequence	AB074524	1489	ENA	180195 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Herbaspirillum autotrophicum strain IAM 14942	180195.5	wgs	PATRIC	180195 tax ID	*
[Ref.: #66792]	Herbaspirillum autotrophicum IAM 14942	2654587661	draft	JGI IMG/M	180195 tax ID	*
[Ref.: #67770]	Herbaspirillum autotrophicum IAM 14942	GCA_001189915	contig	GenBank	180195 tax ID
[Ref.: #66792]	uncultured Parasporobacterium sp. SRR873610_bin.44_metaWRAP_v1.3_MAG	GCA_946642945	contig	PATRIC	1623492 tax ID	*

[Ref.: #377]

GC-content

61.7 mol%

Availability in culture collections External links

[Ref.: #377]

Culture collection no.

DSM 732, ATCC 29984, CCUG 12808, LMG 4326, CIP 107295, IAM 14942, NBRC 15327, JCM 21424, IFO 15327, VKM B-1394, UCCCB7

[Ref.: #20218]

Associated Passport(s) in StrainInfo

3667, 3665

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Localization and stability of hydrogenases from aerobic hydrogen bacteria.	Schneider K, Schlegel HG	Arch Microbiol	10.1007/BF00413086	1977	*
Phylogeny	Paraherbaspirillum soli gen. nov., sp. nov. isolated from soil.	Anandham R, Kim SJ, Moon JY, Weon HY, Kwon SW	J Microbiol	10.1007/s12275-013-2563-5	2013	*

References

#377	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 732

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33759 ; Curators of the CIP;
#45831 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12808

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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