Name: Oxalobacter vibrioformis WoOx3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11349

Type strain:

Species: Oxalobacter vibrioformis

Strain Designation: WoOx3

Culture col. no.: DSM 5502

Strain history: <- I. Dehning, Universität Tübingen, Lehrstuhl Mikrobiologie, Germany; WoOx3 <- B. Schink, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany {1983}

NCBI tax ID(s): 933080 (species)

SI-ID 47935

DSM 5502

Section

Oxalobacter vibrioformis WoOx3 is an anaerobe, mesophilic bacterium that was isolated from anoxic freshwater sediment.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Oxalobacter*
	Species	**Oxalobacter vibrioformis**
	Full Scientific Name (LPSN)	Oxalobacter vibrioformis Dehning and Schink 1990

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2084]

Culture medium

OXALOPHAGUS MEDIUM (DSMZ Medium 194b)

[Ref.: #2084]

Culture medium growth

[Ref.: #2084]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #2084]			growth	30 °C

[Ref.: #2084]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2084]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2084]	Sample type/isolated from	anoxic freshwater sediment
[Ref.: #2084]	Geographic location (country and/or sea, region)	creek near Konstanz
[Ref.: #2084]	Country	Germany
[Ref.: #2084]	Country ISO 3 Code	DEU
[Ref.: #2084]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Sediment
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733700 (>99% sequence identity) for Oxalobacter vibrioformis subclade from Microbeatlas

Aquatic Samples	130
Soil Samples	72
Animal Samples	112
Plant Samples	38
Total Samples	352

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2084]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2084]	Oxalobacter vibrioformis partial 16S rRNA gene, type strain DSM5502T	FR733700	1524	ENA	933080 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oxalobacter vibrioformis WoOx3	GCA_027118995	complete	GenBank	933080 tax ID	*

[Ref.: #2084]

GC-content

51.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oxalobacter vibrioformis WoOx3 NCBI: GCA_027118995.1
[Ref.: #69480]	motile	yes	82.749	no
[Ref.: #69480]	flagellated	no	67.167	no
[Ref.: #69480]	gram-positive	no	98.954	no
[Ref.: #69480]	anaerobic	yes	96.382	yes
[Ref.: #69480]	aerobic	no	96.32	no
[Ref.: #69480]	halophile	no	91.368	no
[Ref.: #69480]	spore-forming	no	94.882	no
[Ref.: #69480]	glucose-ferment	no	66.936	no
[Ref.: #69480]	thermophile	no	94.434	no
[Ref.: #69480]	glucose-util	no	71.263	no

Availability in culture collections External links

[Ref.: #2084]

Culture collection no.

DSM 5502

[Ref.: #80582]

SI-ID 47935

References

#2084

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5502

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80582

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47935.1 )

* These data were automatically processed and therefore are not curated

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