Name: Oxalicibacterium solurbis MY14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11347

Type strain:

Species: Oxalicibacterium solurbis

Strain Designation: MY14

Culture col. no.: DSM 24954, CCM 7664, NBRC 102665

Strain history: <- CCM <- N. Sahin <- T. Iizuka

NCBI tax ID(s): 69280 (species)

SI-ID 396868

DSM 24954

Section

Oxalicibacterium solurbis MY14 is a mesophilic, motile bacterium that was isolated from urban soil.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Oxalicibacterium*
	Species	**Oxalicibacterium solurbis**
	Full Scientific Name (LPSN)	Oxalicibacterium solurbis Sahin et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #69480]	Motility	yes Confidence in %95.223

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17809]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #17809]

Culture medium growth

[Ref.: #17809]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17809]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17809]			growth	28 °C

[Ref.: #17809]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17809]	Sample type/isolated from	urban soil
[Ref.: #17809]	Country	Japan
[Ref.: #17809]	Country ISO 3 Code	JPN
[Ref.: #17809]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17809]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17809]	Oxalicibacterium solurbis gene for 16S rRNA, partial sequence, strain: MY14	AB008503	1459	ENA	69280 tax ID
[Ref.: #20218]	Oxalicibacterium solurbis gene for 16S rRNA, partial sequence, strain: NBRC 102665	AB681897	1462	ENA	69280 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oxalicibacterium solurbis CCM 7664	GCA_014635845	contig	GenBank	69280 tax ID	*
[Ref.: #66792]	Oxalicibacterium solurbis strain CCM 7664	69280.3	wgs	PATRIC	69280 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oxalicibacterium solurbis strain CCM 7664 PATRIC: 69280.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oxalicibacterium solurbis strain CCM 7664 PATRIC: 69280.3
[Ref.: #69480]	gram-positive	no	98.561	no
[Ref.: #69480]	anaerobic	no	98.996	no
[Ref.: #69480]	halophile	no	91.589	no
[Ref.: #69480]	spore-forming	no	94.402	no
[Ref.: #69480]	glucose-util	no	68.753	no
[Ref.: #69480]	thermophile	no	97.83	no
[Ref.: #69480]	flagellated	yes	53.424	no
[Ref.: #69480]	motile	yes	86.592	no
[Ref.: #69480]	aerobic	yes	83.631	no
[Ref.: #69480]	glucose-ferment	no	89.741	no

Availability in culture collections External links

[Ref.: #17809]

Culture collection no.

DSM 24954, CCM 7664, NBRC 102665

[Ref.: #80580]

SI-ID 396868

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of two aerobic ultramicrobacteria isolated from urban soil and a description of Oxalicibacterium solurbis sp. nov.	Sahin N, Gonzalez JM, Iizuka T, Hill JE	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.01954.x	2010	*

References

#17809

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24954

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80580

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396868.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Oxalicibacterium solurbis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Oxalicibacterium solurbis strain CCM 7664

Oxalicibacterium solurbis strain CCM 7664

Change proposal

Change proposal