Massilia niabensis (DSM 21312, CIP 110037, KACC 12632)

Name: Massilia niabensis (DSM 21312, CIP 110037, KACC 12632)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11334

Type strain

Strain Designation 5420S-26

Culture col. no. DSM 21312 CIP 110037 KACC 12632 5420S-26

NCBI tax ID(s) 544910

Special Collections DSMZ CIP Literature strains

History DSMZ <- S.-W. Kwon; 5420S-26 {2008} CIP <- 2009, DSMZ <- S.-W. Kwon, KACC, Korea: strain 5420S-26

Links

Massilia niabensis 5420S-26 is an aerobe, Gram-negative, motile bacterium that was isolated from air sample.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 363415

DSM 21312,KACC 12632,CIP 110037

@ref 20215

Last LPSN update 2026-05-29 08:27:32

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Oxalobacteraceae

Genus Massilia

Species Massilia niabensis

Full scientific name Massilia niabensis Weon et al. 2009

Synonyms (1)

Telluria niabensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29130	negative	2.7 µm	0.75 µm	rod-shaped
121287	negative			rod-shaped
125439	negative				98.081

Pigmentation

29130

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15507	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
37914	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
121287	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
15507	positive	growth	30
29130	positive	growth	05-35
29130	positive	optimum	28
37914	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
29130	positive	optimum	7
29130	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29130	aerobe
125439	obligate aerobe	98.919

Spore formation

@ref	Spore formation	Confidence
125439		99.475

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29130	NaCl	positive	growth	0-1 %
29130	NaCl	positive	optimum	0.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
29130	17632 ChEBI	nitrate	+	reduction
121287	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
121287	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
29130	53426 ChEBI	tween 80	+	carbon source
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
121287	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
29130	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
29130	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	+	3.2.1.31	from API zym
29130	catalase	+	1.11.1.6
121287	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29130	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121287	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
121287	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121287	-	+	+	+	-	+	-	-	-	-	+	+	-	+	+	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
15507	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Air

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
15507	air sample	Suwon region (37°16'46" N, 126°59'10" E)	Republic of Korea	KOR	Asia	37.2794	126.986 37.2794/126.986
121287	Environment, Air sample	Suwon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU808006 (>99% sequence identity) for Oxalobacteraceae from Microbeatlas

Aquatic Samples	15
Soil Samples	53
Animal Samples	30
Plant Samples	3
Total Samples	101

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15507	1	Risk group (German classification) According to TRBA 466
121287	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265508v1 assembly for Massilia niabensis KACC 12632	scaffold	GCA_042655085	544910	64.61

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15507	Massilia niabensis strain 5420S-26 16S ribosomal RNA gene, partial sequence	EU808006	1398		544910

GC content

@ref	GC-content (mol%)	Method
15507	67.8	high performance liquid chromatography (HPLC)
29130	67.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4265508v1 assembly for Massilia niabensis KACC 12632
NCBI: GCA_042655085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.92	no
125439	gram_stain	BacteriaNetⓘ	negative	98.08	no
125439	spore_formation	BacteriaNetⓘ	no	99.48	no
125439	motility	BacteriaNetⓘ	yes	76.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Massilia psychrophila sp. nov., isolated from an ice core.	Guo B, Liu Y, Gu Z, Shen L, Liu K, Wang N, Xing T, Liu H, Zhou Y, Li J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001315	2016
Phylogeny	Massiliapinisoli sp. nov., isolated from forest soil.	Altankhuu K, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001249	2016
Phylogeny	Massilia niabensis sp. nov. and Massilia niastensis sp. nov., isolated from air samples.	Weon HY, Kim BY, Hong SB, Jeon YA, Koo BS, Kwon SW, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.006908-0	2009

References

#15507	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21312
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25556	IJSEM 1656 2009 ( DOI 10.1099/ijs.0.006908-0 , PubMed 19542125 )
#29130	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25556
#37914	; Curators of the CIP;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121287	Collection of Institut Pasteur ; Curators of the CIP; CIP 110037
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Massilia niabensis (DSM 21312, CIP 110037, KACC 12632)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042655085

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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