Massilia alkalitolerans DSM 17462 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from soil.
Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Oxalobacteraceae |
| Genus Massilia |
| Species Massilia alkalitolerans |
| Full scientific name Massilia alkalitolerans (Xu et al. 2005) Kämpfer et al. 2011 |
| Synonyms (2) |
| 31364 | Productionyes |
| @ref: | 66793 |
| multimedia content: | EM_DSM_17462_1.jpg |
| multimedia.multimedia content: | EM_DSM_17462_1.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_17462_2.jpg |
| multimedia.multimedia content: | EM_DSM_17462_2.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_17462_3.jpg |
| multimedia.multimedia content: | EM_DSM_17462_3.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_17462_4.jpg |
| multimedia.multimedia content: | EM_DSM_17462_4.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_17462_5.jpg |
| multimedia.multimedia content: | EM_DSM_17462_5.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7001 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 38315 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 116252 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68371 | 27613 ChEBI | amygdalin | + | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 116252 | 16947 ChEBI | citrate | + | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 31364 | 23652 ChEBI | dextrin | + | carbon source | |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 31364 | 4853 ChEBI | esculin | + | hydrolysis | |
| 116252 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68369 | 4853 ChEBI | esculin | + | hydrolysis | from API 20NE |
| 31364 | 28757 ChEBI | fructose | + | carbon source | |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 31364 | 28260 ChEBI | galactose | + | carbon source | |
| 68369 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20NE |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 31364 | 17234 ChEBI | glucose | + | carbon source | |
| 116252 | 17234 ChEBI | glucose | +/- | degradation | |
| 31364 | 17754 ChEBI | glycerol | + | carbon source | |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 116252 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68369 | 30849 ChEBI | L-arabinose | + | assimilation | from API 20NE |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 31364 | 17716 ChEBI | lactose | + | carbon source | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 116252 | 15792 ChEBI | malonate | + | assimilation | |
| 31364 | 17306 ChEBI | maltose | + | carbon source | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68369 | 17306 ChEBI | maltose | + | assimilation | from API 20NE |
| 31364 | 29864 ChEBI | mannitol | + | carbon source | |
| 31364 | 37684 ChEBI | mannose | + | carbon source | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 31364 | 28053 ChEBI | melibiose | + | carbon source | |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 116252 | 17632 ChEBI | nitrate | + | reduction | |
| 116252 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 116252 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 31364 | 16634 ChEBI | raffinose | + | carbon source | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 31364 | 33942 ChEBI | ribose | + | carbon source | |
| 31364 | 17814 ChEBI | salicin | + | carbon source | |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 31364 | 17151 ChEBI | xylitol | + | carbon source | |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 116252 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 31364 | alpha-galactosidase | + | 3.2.1.22 | |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 116252 | amylase | + | ||
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 116252 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | + | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 116252 | caseinase | + | 3.4.21.50 | |
| 116252 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 116252 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 116252 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 31364 | gelatinase | + | ||
| 116252 | gelatinase | +/- | ||
| 68369 | gelatinase | + | from API 20NE | |
| 116252 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 116252 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 116252 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 116252 | ornithine decarboxylase | - | 4.1.1.17 | |
| 116252 | oxidase | + | ||
| 116252 | phenylalanine ammonia-lyase | + | 4.3.1.24 | |
| 116252 | protease | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 116252 | tryptophan deaminase | - | ||
| 116252 | tween esterase | - | ||
| 31364 | urease | + | 3.5.1.5 | |
| 116252 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7001 | - | - | - | - | + | - | + | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM42778v1 assembly for Massilia alkalitolerans DSM 17462 | scaffold | 1111733 | 63.73 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 7001 | Naxibacter alkalitolerans 16S ribosomal RNA gene, partial sequence | AY679161 | 1526 | 1111733 |
| 31364 | GC-content (mol%)62.4 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria and non-violacein-producing close relatives. | De Leon ME, Wilson HS, Jospin G, Eisen JA. | Microb Genom | 10.1099/mgen.0.000971 | 2023 | |
| Genetics | Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology. | Karimi E, Geslain E, KleinJan H, Tanguy G, Legeay E, Corre E, Dittami SM. | Genome Biol Evol | 10.1093/gbe/evz278 | 2020 | |
| Insights into Chemoreceptor MCP2201-Sensing D-Malate. | Cui R, Li J, Hong Y, Guo L, Wang YH, Bai YF, Li DF. | Int J Mol Sci | 10.3390/ijms26104902 | 2025 | ||
| Diversity and bioprospecting for industrial hydrolytic enzymes of microbial communities isolated from deserted areas of south-east Morocco. | Manni A, Filali-Maltouf A. | AIMS Microbiol | 10.3934/microbiol.2022002 | 2022 | ||
| Taxonomic and Functional Differences in Cervical Microbiome Associated with Cervical Cancer Development. | Tango CN, Seo SS, Kwon M, Lee DO, Chang HK, Kim MK. | Sci Rep | 10.1038/s41598-020-66607-4 | 2020 | ||
| Genetics | The O-chain structure from the LPS of the bacterium Naxibacter alkalitolerans YIM 31775T. | Silipo A, Molinaro A, Jiang CL, Jiang Y, Xu P, Xu LH, Lanzetta R, Parrilli M | Carbohydr Res | 10.1016/j.carres.2006.12.012 | 2006 | |
| Phylogeny | Revision of the genus Massilia La Scola et al. 2000, with an emended description of the genus and inclusion of all species of the genus Naxibacter as new combinations, and proposal of Massilia consociata sp. nov. | Kampfer P, Lodders N, Martin K, Falsen E. | Int J Syst Evol Microbiol | 10.1099/ijs.0.025585-0 | 2011 | |
| Phylogeny | Massilia agri sp. nov., isolated from reclaimed grassland soil. | Chaudhary DK, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002002 | 2017 | |
| Phylogeny | Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family 'Oxalobacteraceae' isolated from China. | Xu P, Li WJ, Tang SK, Zhang YQ, Chen GZ, Chen HH, Xu LH, Jiang CL | Int J Syst Evol Microbiol | 10.1099/ijs.0.63407-0 | 2005 |
| #7001 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17462 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #31364 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27677 (see below) |
| #38315 | ; Curators of the CIP; |
| #59039 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50882 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66793 | Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 ) |
| #67771 | Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC; |
| #68369 | Automatically annotated from API 20NE . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #116252 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108793 |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive11324.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data