Name: Duganella phyllosphaerae T54
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11312

Type strain:

Species: Duganella phyllosphaerae

Strain Designation: T54

Culture col. no.: DSM 23865, CCM 7824, LMG 25994, CCUG 60090

Strain history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; T54 <- S. Wellner

NCBI tax ID(s): 762836 (species)

SI-ID 370789

LMG 25994, CCM 7824, DSM 23865, CCUG 60090

Section

Duganella phyllosphaerae T54 is an aerobe, mesophilic, motile bacterium that was isolated from Trifolium repens leaf surface.

motile
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Duganella*
	Species	**Duganella phyllosphaerae**
	Full Scientific Name (LPSN)	Duganella phyllosphaerae Kämpfer et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #69480]	Motility	yes Confidence in %98.539

[Ref.: #62195]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17414]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #17414]

Culture medium growth

[Ref.: #17414]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17414]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17414]			growth	28 °C
[Ref.: #62195]			growth	30 °C

[Ref.: #17414]	Temperature range	mesophilic
[Ref.: #62195]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62195]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17414]	Sample type/isolated from	Trifolium repens leaf surface
[Ref.: #17414]	Host species	Trifolium repens
[Ref.: #17414]	Geographic location (country and/or sea, region)	Hainich-Dün region
[Ref.: #17414]	Country	Germany
[Ref.: #17414]	Country ISO 3 Code	DEU
[Ref.: #17414]	Continent	Europe

[Ref.: #62195]	Sample type/isolated from	Leaf surface (Trifolium repens)
[Ref.: #62195]	Sampling date	2000
[Ref.: #62195]	Geographic location (country and/or sea, region)	Hainich
[Ref.: #62195]	Country	Germany
[Ref.: #62195]	Country ISO 3 Code	DEU
[Ref.: #62195]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR852575 (>99% sequence identity) for Duganella from Microbeatlas

Aquatic Samples	3834
Soil Samples	5243
Animal Samples	4287
Plant Samples	4842
Total Samples	18206

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17414]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17414]	Duganella phyllosphaerae partial 16S rRNA gene, type strain T54T	FR852575	1357	ENA	762836 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Duganella phyllosphaerae T54	GCA_001758785	contig	GenBank	762836 tax ID	*
[Ref.: #66792]	Duganella phyllosphaerae strain T54	762836.10	wgs	PATRIC	762836 tax ID	*
[Ref.: #66792]	Duganella phyllosphaerae T54, DSM 23865	2623620540	draft	JGI IMG/M	762836 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Duganella phyllosphaerae strain T54 PATRIC: 762836.10
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Duganella phyllosphaerae strain T54 PATRIC: 762836.10
[Ref.: #69480]	motile	yes	90.429	no
[Ref.: #69480]	flagellated	yes	73.757	no
[Ref.: #69480]	gram-positive	no	98.564	no
[Ref.: #69480]	anaerobic	no	98.741	yes
[Ref.: #69480]	aerobic	yes	90.012	yes
[Ref.: #69480]	halophile	no	93.146	no
[Ref.: #69480]	spore-forming	no	94.112	no
[Ref.: #69480]	glucose-util	yes	93.235	no
[Ref.: #69480]	thermophile	no	99.55	yes
[Ref.: #69480]	glucose-ferment	no	90.794	no

Availability in culture collections External links

[Ref.: #17414]

Culture collection no.

DSM 23865, CCM 7824, LMG 25994, CCUG 60090

[Ref.: #80545]

SI-ID 370789

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Duganella phyllosphaerae sp. nov., isolated from the leaf surface of Trifolium repens and proposal to reclassify Duganella violaceinigra into a novel genus as Pseudoduganella violceinigra gen. nov., comb. nov.	Kampfer P, Wellner S, Lohse K, Martin K, Lodders N	Syst Appl Microbiol	10.1016/j.syapm.2011.10.003	2011	*

References

#17414

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23865

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#62195 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60090

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80545

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370789.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Duganella phyllosphaerae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Duganella phyllosphaerae strain T54

Duganella phyllosphaerae strain T54

Change proposal

Change proposal