Name: Oceanospirillum beijerinckii DSM 7166
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11287

Type strain:

Species: Oceanospirillum beijerinckii

Culture col. no.: DSM 7166, ATCC 12754, NCMB 52, CIP 103375, LMG 5405, NCIMB 52, VPI 34

Strain history: CIP <- 1990, NCIMB, Spirillum beijerinckii <- 1958, M.A. Williams: strain VPI 34

NCBI tax ID(s): 1122616 (strain), 64976 (species)

SI-ID 3650

LMG 5405, ATCC 12754, DSM 7166, LMG 18377, LMG 5335, NCMB 52, CIP 103375, IFO 15445, NCIMB 52, NBRC 15445

Other strains from Oceanospirillum beijerinckii

O. beijerinckii DSM 6288, ATCC 33337, IFO 3612, ...

Section

Oceanospirillum beijerinckii DSM 7166 is a mesophilic, motile bacterium that was isolated from seawater.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Oceanospirillum*
	Species	**Oceanospirillum beijerinckii**
	Full Scientific Name (LPSN)	Oceanospirillum beijerinckii (Williams and Rittenberg 1957) Hylemon et al. 1973 (Approved Lists 1980)

	Synonym	"Spirillum* pelagicum"*
	Synonym	"Spirillum* beijerinckii"*
	Synonym	Oceanospirillum pelagicum
	Synonym	Oceanospirillum beijerinckii subsp. pelagicum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %97.92

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3029]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #3029]

Culture medium growth

[Ref.: #3029]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3029]

Culture medium composition

expand / minimize

[Ref.: #38129]

Culture medium

Marine agar (MA)

[Ref.: #38129]

Culture medium growth

[Ref.: #38129]

Culture medium composition

expand / minimize

[Ref.: #116777]

Culture medium

CIP Medium 13

[Ref.: #116777]

Culture medium growth

[Ref.: #116777]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #3029]			growth	25 °C
[Ref.: #38129]			growth	25 °C

[Ref.: #3029]	Temperature range	mesophilic
[Ref.: #38129]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.802

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3029]	Sample type/isolated from	seawater

[Ref.: #116777]	Sample type/isolated from	Environment, Seawater
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB006760 (>99% sequence identity) for Oceanospirillum beijerinckii subclade from Microbeatlas

Aquatic Samples	1926
Soil Samples	59
Animal Samples	312
Plant Samples	8
Total Samples	2305

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3029]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116777]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3029]	Oceanospirillum beijerinckii subsp. beijerinckii gene for 16S rRNA, partial sequence, strain: IFO 15445	AB006760	1461	ENA	64981 tax ID
[Ref.: #20218]	Oceanospirillum beijerinckii gene for 16S rRNA, partial sequence, strain: NBRC 15445	AB680857	1465	ENA	64976 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oceanospirillum beijerinckii DSM 7166	GCA_000422425	scaffold	GenBank	1122616 tax ID	*
[Ref.: #66792]	Oceanospirillum beijerinckii DSM 7166	1122616.3	wgs	PATRIC	1122616 tax ID	*
[Ref.: #66792]	Oceanospirillum beijerinckii DSM 7166	2524023058	draft	JGI IMG/M	1122616 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oceanospirillum beijerinckii DSM 7166 DSM 7166 NCBI: GCA_000422425.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oceanospirillum beijerinckii DSM 7166 DSM 7166 NCBI: GCA_000422425.1
[Ref.: #69480]	motile	yes	94.784	no
[Ref.: #69480]	flagellated	yes	93.572	no
[Ref.: #69480]	gram-positive	no	98.902	no
[Ref.: #69480]	anaerobic	no	95.589	no
[Ref.: #69480]	aerobic	yes	80.019	no
[Ref.: #69480]	halophile	yes	74.027	no
[Ref.: #69480]	spore-forming	no	92.524	no
[Ref.: #69480]	thermophile	no	99.052	no
[Ref.: #69480]	glucose-util	yes	65.352	no
[Ref.: #69480]	glucose-ferment	no	81.914	no

Availability in culture collections External links

[Ref.: #3029]

Culture collection no.

DSM 7166, ATCC 12754, NCMB 52, CIP 103375, LMG 5405, NCIMB 52, VPI 34

[Ref.: #80520]

SI-ID 3650

References

#3029

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7166

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38129 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80520

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3650.1 )

#116777 Collection of Institut Pasteur ; Curators of the CIP; CIP 103375
* These data were automatically processed and therefore are not curated

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Oceanospirillum beijerinckii DSM 7166 DSM 7166

Oceanospirillum beijerinckii DSM 7166 DSM 7166

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