Name: Neptunomonas antarctica S3-22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11283

Type strain:

Species: Neptunomonas antarctica

Strain Designation: S3-22

Culture col. no.: DSM 22306, CCTCC AB 209086, KACC 14056

Strain history: <- Y.-Z. Zhang, State Key Lab. Microbial Technol., Marine Biotechnol. Res. Center, Shandong Univ., Jinan, China; S3-22 <- Y. Yong

NCBI tax ID(s): 619304 (species)

SI-ID 408190

DSM 22306

Section

Neptunomonas antarctica S3-22 is a facultative aerobe, psychrophilic, Gram-negative bacterium that was isolated from marine sediments at a water depth of 20 m.

Gram-negative
motile
rod-shaped
facultative aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Neptunomonas*
	Species	**Neptunomonas antarctica**
	Full Scientific Name (LPSN)	Neptunomonas antarctica Zhang et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29645]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #29645]	Cell length	1.6-1.8 µm

[Ref.: #29645]	Cell width	0.6-1 µm

[Ref.: #29645]	Cell shape	rod-shaped

[Ref.: #29645]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.453

[Ref.: #29645]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16268]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16268]

Culture medium growth

[Ref.: #16268]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16268]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16268]	growth	20 °C
[Ref.: #29645]	growth	04-25 °C
[Ref.: #29645]	optimum	15 °C

[Ref.: #16268]	Temperature range	psychrophilic
[Ref.: #29645]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #29645]			optimum	6.5-7
[Ref.: #29645]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29645]

Oxygen tolerance

facultative aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.969

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29645]		NaCl		growth	0.5-5	%
[Ref.: #29645]		NaCl		optimum	02-03	%

[Ref.: #29645]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29645]	fructose ChEBI	+	carbon source
[Ref.: #29645]	mannitol ChEBI	+	carbon source
[Ref.: #29645]	nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29645]		catalase	+	1.11.1.6
[Ref.: #29645]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16268]	Sample type/isolated from	marine sediments at a water depth of 20 m
[Ref.: #16268]	Geographic location (country and/or sea, region)	Nella Fjord, 69° 22' 06'' S 76° 22' 45'' E
[Ref.: #16268]	Continent	Australia and Oceania
[Ref.: #16268]	Geographic location	-69.3683°/76.3792°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ713802 (>99% sequence identity) for Neptunomonas antarctica subclade from Microbeatlas

Aquatic Samples	1657
Soil Samples	166
Animal Samples	240
Plant Samples	67
Total Samples	2130

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16268]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16268]	Neptunomonas antarctica strain S3-22 16S ribosomal RNA gene, partial sequence	FJ713802	1508	ENA	619304 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neptunomonas antarctica DSM 22306	GCA_900156635	scaffold	GenBank	619304 tax ID	*
[Ref.: #66792]	Neptunomonas antarctica S3-22	GCA_001305295	contig	GenBank	619304 tax ID	*
[Ref.: #66792]	Neptunomonas antarctica strain DSM 22306	619304.5	wgs	PATRIC	619304 tax ID	*
[Ref.: #66792]	Neptunomonas antarctica DSM 22306	2681813508	draft	JGI IMG/M	619304 tax ID	*
[Ref.: #66792]	Neptunomonas antarctica S3-22	2645727840	draft	JGI IMG/M	619304 tax ID	*

[Ref.: #16268]	GC-content	45.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29645]	GC-content	45.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Neptunomonas antarctica DSM 22306 NCBI: GCA_900156635.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Neptunomonas antarctica DSM 22306 NCBI: GCA_900156635.1
[Ref.: #69480]	motile	yes	90.895	yes
[Ref.: #69480]	flagellated	yes	91.987	no
[Ref.: #69480]	gram-positive	no	99.021	yes
[Ref.: #69480]	anaerobic	no	98.48	yes
[Ref.: #69480]	aerobic	yes	56.39	yes
[Ref.: #69480]	halophile	yes	75.99	no
[Ref.: #69480]	spore-forming	no	94.84	no
[Ref.: #69480]	thermophile	no	99.557	no
[Ref.: #69480]	glucose-util	yes	72.046	no
[Ref.: #69480]	glucose-ferment	no	84.44	no

Availability in culture collections External links

[Ref.: #16268]

Culture collection no.

DSM 22306, CCTCC AB 209086, KACC 14056

[Ref.: #80516]

SI-ID 408190

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Insight into the genome sequence of a sediment-adapted marine bacterium Neptunomonas antarctica S3-22(T) from Antarctica.	Rong JC, Liu M, Li Y, Sun TY, Xie BB, Shi M, Chen XL, Qin QL	Mar Genomics	10.1016/j.margen.2015.11.006	2015	*
Phylogeny	Neptunomonas antarctica sp. nov., isolated from marine sediment.	Zhang XY, Zhang YJ, Yu Y, Li HJ, Gao ZM, Chen XL, Chen B, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.017756-0	2009	*

References

#16268

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22306

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29645

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26034 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80516

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408190.1 )

#26034

IJSEM 1958 2010 ( DOI 10.1099/ijs.0.017756-0 , PubMed 19801396 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Neptunomonas antarctica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Neptunomonas antarctica DSM 22306

Neptunomonas antarctica DSM 22306

Change proposal

Change proposal