Name: Shouchella clausii PN 23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1127

Type strain:

Species: Shouchella clausii

Strain Designation: PN 23, C 360

Culture col. no.: DSM 8716, ATCC 700160, CIP 104718, NCIB 10309, CCUG 47262, NCIMB 10309, LMG 17945

Strain history: <- NCIMB <- Novo Industri; C 360

NCBI tax ID(s): 79880 (species)

Other strains from Shouchella clausii

S. clausii PN 43, 221, DSM 2512, ATCC 21522, ...
S. clausii PN 46, Y-76, DSM 2515, ATCC 21537, ...
S. clausii M-29, DSM 2525, ATCC 31084, FERM ...
S. clausii PN 24, C 372, DSM 9783, NCIMB 10317
S. clausii PN 35, C 374, DSM 9784, NCIMB 10319
S. clausii PN 76, Br-F, DSM 9785
S. clausii K2-6, DSM 30907
S. clausii SC-N012, DSM 21911, NCCB 100267

Section

Shouchella clausii PN 23 is an aerobe, mesophilic bacterium that was isolated from garden soil.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Shouchella*
	Species	**Shouchella clausii**
	Full Scientific Name (PNU)	Shouchella clausii (Nielsen et al. 1995) Joshi et al. 2022

	Synonym	Alkalihalobacillus clausii
	Synonym	Bacillus clausii
	Synonym	Shouchella rhizosphaerae
	Synonym	Alkalihalobacillus rhizosphaerae
	Synonym	Bacillus rhizosphaerae

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3246]

Culture medium

ALKALINE NUTRIENT AGAR (DSMZ Medium 31)

[Ref.: #3246]

Culture medium growth

[Ref.: #3246]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #3246]

Culture medium composition

expand / minimize

[Ref.: #35723]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35723]

Culture medium growth

[Ref.: #35723]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3246]	growth	30 °C
[Ref.: #35723]	growth	30 °C
[Ref.: #57609]	growth	30-37 °C

[Ref.: #3246]	Temperature range	mesophilic
[Ref.: #35723]	Temperature range	mesophilic
[Ref.: #57609]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57609]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3246]	Sample type/isolated from	garden soil
[Ref.: #3246]	Geographic location (country and/or sea, region)	Slagelse
[Ref.: #3246]	Country	Denmark
[Ref.: #3246]	Country ISO 3 Code	DNK
[Ref.: #3246]	Continent	Europe

[Ref.: #57609]	Sample type/isolated from	Garden soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3246]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bacillus clausii DSM 8716, 16S rRNA gene	X76440	1505	ENA	79880 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkalihalobacillus clausii DSM 8716	GCA_002250115	complete	GenBank	79880 tax ID	*
[Ref.: #66792]	Bacillus clausii strain DSM 8716	79880.14	complete	PATRIC	79880 tax ID	*
[Ref.: #66792]	Bacillus clausii DSM 8716	2811995369	complete	JGI IMG/M	79880 tax ID	*
[Ref.: #66792]	uncultured Halioglobus sp. AK_MB121	GCA_943788155	contig	PATRIC	1492713 tax ID	*

[Ref.: #3246]

GC-content

42.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #3246]

Culture collection no.

DSM 8716, ATCC 700160, CIP 104718, NCIB 10309, CCUG 47262, NCIMB 10309, LMG 17945

[Ref.: #20218]

Associated Passport(s) in StrainInfo

55120, 117623, 55119, 161119, 117625

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Chromosomal aadD2 encodes an aminoglycoside nucleotidyltransferase in Bacillus clausii.	Bozdogan B, Galopin S, Gerbaud G, Courvalin P, Leclercq R	Antimicrob Agents Chemother	10.1128/AAC.47.4.1343-1346.2003	2003	*
Pathogenicity	Characterization of a new erm-related macrolide resistance gene present in probiotic strains of Bacillus clausii.	Bozdogan B, Galopin S, Leclercq R	Appl Environ Microbiol	10.1128/AEM.70.1.280-284.2004	2004	*
Biotechnology	Tolerance to challenges miming gastrointestinal transit by spores and vegetative cells of Bacillus clausii.	Cenci G, Trotta F, Caldini G	J Appl Microbiol	10.1111/j.1365-2672.2006.03042.x	2006	*
Phylogeny	Bacillus rhizosphaerae sp. nov., an novel diazotrophic bacterium isolated from sugarcane rhizosphere soil.	Madhaiyan M, Poonguzhali S, Lee JS, Lee KC, Hari K	Antonie Van Leeuwenhoek	10.1007/s10482-011-9600-3	2011	*
Phylogeny	Bacillus shacheensis sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil.	Lei Z, Qiu P, Ye R, Tian J, Liu Y, Wang L, Tang SK, Li WJ, Tian Y	J Gen Appl Microbiol	DN/JST.JSTAGE/jgam/60.101	2014	*
Enzymology	(R,R)-Butane-2,3-diol dehydrogenase from Bacillus clausii DSM 8716(T): Cloning and expression of the bdhA-gene, and initial characterization of enzyme.	Muschallik L, Molinnus D, Bongaerts J, Pohl M, Wagner T, Schoning MJ, Siegert P, Selmer T	J Biotechnol	10.1016/j.jbiotec.2017.07.020	2017	*
Phylogeny	Genome-based reclassification of Bacillus plakortidis Borchert et al. 2007 and Bacillus lehensis Ghosh et al. 2007 as a later heterotypic synonym of Bacillus oshimensis Yumoto et al. 2005; Bacillus rhizosphaerae Madhaiyan et al. 2011 as a later heterotypic synonym of Bacillus clausii Nielsen et al. 1995.	Liu GH, Narsing Rao MP, Dong ZY, Wang JP, Che JM, Chen QQ, Sengonca C, Liu B, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01299-z	2019	*
Enzymology	Synthesis of alpha-hydroxy ketones and vicinal (R,R)-diols by Bacillus clausii DSM 8716(T) butanediol dehydrogenase.	Muschallik L, Molinnus D, Jablonski M, Kipp CR, Bongaerts J, Pohl M, Wagner T, Schoning MJ, Selmer T, Siegert P	RSC Adv	10.1039/d0ra02066d	2020	*
	Probiotic characterization of Bacillus subtilis P223 isolated from kimchi.	Jeon HL, Lee NK, Yang SJ, Kim WS, Paik HD	Food Sci Biotechnol	10.1007/s10068-017-0148-5	2017	*
	Effect of Physical and Chemical Treatments on Viability, Sub-Lethal Injury, and Release of Cellular Components from Bacillus clausii and Bacillus coagulans Spores and Cells.	Bevilacqua A, Petruzzi L, Sinigaglia M, Speranza B, Campaniello D, Ciuffreda E, Corbo MR	Foods	10.3390/foods9121814	2020	*

References

#3246

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8716

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35723 ; Curators of the CIP;
#57609 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47262

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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