Murinocardiopsis flavida (DSM 45312, CCM 7612, CCUG 57390)

Name: Murinocardiopsis flavida (DSM 45312, CCM 7612, CCUG 57390)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11264

Type strain

Strain Designation 14-Be-013

Culture col. no. DSM 45312 CCM 7612 CCUG 57390 14-Be-013 JCM 17973 1 more

NCBI tax ID(s) 645275

Special Collections DSMZ CCUG JCM Literature strains CIP

Links

Murinocardiopsis flavida 14-Be-013 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from wall paper of an outer house wall colonized with moulds.

Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 370399

CCM 7612,DSM 45312,JCM 17973,CIP 110198,CCUG 57390

@ref 20215

Last LPSN update 2025-12-16 09:49:32

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Nocardiopsidaceae

Genus Murinocardiopsis

Species Murinocardiopsis flavida

Full scientific name Murinocardiopsis flavida Kämpfer et al. 2010

BacDive ID	Other strains from **Murinocardiopsis flavida** (2)	Type strain
155365	M. flavida CCUG 57469
175301	M. flavida 02-Gi-014, DSM 45314

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
29567	positive
119375	positive	rod-shaped
125439	positive		99.9
125439			93.2
125438			93.5
125438	positive		90.663

Colony morphology

61309

Incubation period3-7 days

Pigmentation

29567

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16152	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
16152	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
37577	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
16152	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
16152	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
119375	CIP Medium 57	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16152	positive	growth	28	mesophilic
37577	positive	growth	30	mesophilic
61309	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29567	aerobe
61309	aerobe
119375	obligate aerobe
125439	obligate aerobe	99.5

Spore formation

@ref	Spore formation	Confidence
29567
125439		94.5

Observation

67770

Observationquinones: MK-10(H₄), MK-11(H₄), MK-12(H₂), MK-10(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29567	37054 ChEBI	3-hydroxybutyrate	+	carbon source
29567	30089 ChEBI	acetate	+	carbon source
29567	22599 ChEBI	arabinose	+	carbon source
29567	17057 ChEBI	cellobiose	+	carbon source
29567	28757 ChEBI	fructose	+	carbon source
29567	28260 ChEBI	galactose	+	carbon source
29567	17234 ChEBI	glucose	+	carbon source
29567	24996 ChEBI	lactate	+	carbon source
29567	25115 ChEBI	malate	+	carbon source
29567	17306 ChEBI	maltose	+	carbon source
29567	29864 ChEBI	mannitol	+	carbon source
29567	37684 ChEBI	mannose	+	carbon source
29567	17268 ChEBI	myo-inositol	+	carbon source
29567	506227 ChEBI	N-acetylglucosamine	+	carbon source
119375	17632 ChEBI	nitrate	+	reduction
119375	16301 ChEBI	nitrite	-	reduction
29567	26271 ChEBI	proline	+	carbon source
29567	15361 ChEBI	pyruvate	+	carbon source
29567	26546 ChEBI	rhamnose	+	carbon source
29567	15963 ChEBI	ribitol	+	carbon source
29567	33942 ChEBI	ribose	+	carbon source
29567	17814 ChEBI	salicin	+	carbon source
29567	27082 ChEBI	trehalose	+	carbon source
29567	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119375	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119375	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119375	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119375	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	propanol degradation	100	7 of 7
66794	glycogen metabolism	100	5 of 5
66794	myo-inositol biosynthesis	100	10 of 10
66794	acetate fermentation	100	4 of 4
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	daunorubicin biosynthesis	100	9 of 9
66794	enterobactin biosynthesis	100	3 of 3
66794	aspartate and asparagine metabolism	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	4-hydroxymandelate degradation	100	9 of 9
66794	cardiolipin biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	cyanate degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	starch degradation	100	10 of 10
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	ethanol fermentation	100	2 of 2
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	serine metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	aclacinomycin biosynthesis	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	purine metabolism	85.11	80 of 94
66794	leucine metabolism	84.62	11 of 13
66794	degradation of sugar acids	84	21 of 25
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	alanine metabolism	79.31	23 of 29
66794	degradation of pentoses	78.57	22 of 28
66794	chorismate metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	arginine metabolism	75	18 of 24
66794	glycogen biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	degradation of sugar alcohols	75	12 of 16
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	proline metabolism	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	NAD metabolism	72.22	13 of 18
66794	degradation of hexoses	72.22	13 of 18
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	tryptophan metabolism	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	ascorbate metabolism	68.18	15 of 22
66794	octane oxidation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	non-pathway related	65.79	25 of 38
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	tyrosine metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	lysine metabolism	61.9	26 of 42
66794	methionine metabolism	61.54	16 of 26
66794	sulfate reduction	61.54	8 of 13
66794	gallate degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	glutathione metabolism	57.14	8 of 14
66794	phenol degradation	55	11 of 20
66794	metabolism of disaccharids	54.55	6 of 11
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	lactate fermentation	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	carnitine metabolism	50	4 of 8
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	carotenoid biosynthesis	50	11 of 22
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	coenzyme M biosynthesis	50	5 of 10
66794	glycine metabolism	50	5 of 10
66794	CMP-KDO biosynthesis	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	polyamine pathway	43.48	10 of 23
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	arachidonate biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	cholesterol biosynthesis	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	chlorophyll metabolism	33.33	6 of 18
66794	vitamin B12 metabolism	32.35	11 of 34
66794	arachidonic acid metabolism	27.78	5 of 18
66794	methanogenesis from CO2	25	3 of 12
66794	biotin biosynthesis	25	1 of 4

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119375	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#House
#Engineered	#Industrial	#Engineered product
#Host	#Fungi	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
16152	wall paper of an outer house wall colonized with moulds	Berlin	Germany	DEU	Europe
61309	Indoor walls colonized with molds	Berlin	Germany	DEU	Europe
67770	Wallpaper of an outer house wall and colonized with moulds	Berlin	Germany	DEU	Europe
119375	Wallpaper material	Berlin	Germany	DEU	Europe	2006

Taxonmaps

69479

Global distribution of 16S sequence FN393755 (>99% sequence identity) for Murinocardiopsis flavida subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	82
Animal Samples	118
Plant Samples	19
Total Samples	227

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16152	1	Risk group (German classification) According to TRBA 466
119375	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM301448v1 assembly for Murinocardiopsis flavida DSM 45312	scaffold	GCA_003014485	645275.3	2728369519	645275	59.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16152	Murinocardiopsis flavida partial 16S rRNA gene, strain 14-Be-013	FN393755	1418		645275

GC content

@ref	GC-content (mol%)	Method
67770	72.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Murinocardiopsis flavida DSM 45312
NCBI: GCA_003014485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	94.50	no
125439	motility	BacteriaNetⓘ	no	93.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Murinocardiopsis flavida strain DSM 45312
PATRIC: 645275.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.66	yes
125438	anaerobic	anaerobicⓘ	no	97.56	yes
125438	aerobic	aerobicⓘ	yes	84.01	yes
125438	spore-forming	spore-formingⓘ	yes	79.16	no
125438	thermophilic	thermophileⓘ	no	93.03	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic Insights into the Distribution and Phylogeny of Glycopeptide Resistance Determinants within the Actinobacteria Phylum.	Andreo-Vidal A, Binda E, Fedorenko V, Marinelli F, Yushchuk O.	Antibiotics (Basel)	10.3390/antibiotics10121533	2021
Phylogeny	Spiractinospora alimapuensis gen. nov., sp. nov., isolated from marine sediment of Valparaiso Bay (Chile) and proposal for reclassification of two species of the genus Nocardiopsis.	Claverias FP, Serna-Cardona N, Cumsille A, Zamora-Leiva L, Riesco R, Couve E, Trujillo ME, Camara B	Int J Syst Evol Microbiol	10.1099/ijsem.0.005207	2022
Phylogeny	Spinactinospora alkalitolerans gen. nov., sp. nov., an actinomycete isolated from marine sediment.	Chang X, Liu W, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.027383-0	2011
Phylogeny	Murinocardiopsis flavida gen. nov., sp. nov., an actinomycete isolated from indoor walls.	Kampfer P, Schafer J, Lodders N, Martin K	Int J Syst Evol Microbiol	10.1099/ijs.0.015990-0	2009

References

#16152	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45312
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29567	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25962 (see below)
#37577	; Curators of the CIP;
#61309	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57390
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119375	Collection of Institut Pasteur ; Curators of the CIP; CIP 110198
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Murinocardiopsis flavida (DSM 45312, CCM 7612, CCUG 57390)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003014485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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