Halomonas titanicae C-125 is a bacterium that was isolated from soil.
genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Oceanospirillales |
| Family Halomonadaceae |
| Genus Halomonas |
| Species Halomonas titanicae |
| Full scientific name Halomonas titanicae Mann et al. 2010 |
| Synonyms (1) |
| BacDive ID | Other strains from Halomonas titanicae (1) | Type strain |
|---|---|---|
| 6076 | H. titanicae BH1, DSM 22872, ATCC BAA-1257, CECT 7585, ... (type strain) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7421 | ALKALINE NUTRIENT AGAR (DSMZ Medium 31) | Medium recipe at MediaDive | Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water |
Global distribution of 16S sequence AB598741 (>99% sequence identity) for Alkalihalobacillus halodurans from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1114v1 assembly for Halalkalibacterium halodurans C-125 | complete | 272558 | 96.49 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Bacillus halodurans gene for 16S rRNA, partial sequence, strain: JCM 9153 | AB598741 | 1413 | 86665 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 93.24 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 66.33 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 83.33 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 92.63 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 81.41 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 88.38 | no |
| 125438 | aerobic | aerobicⓘ | yes | 77.30 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 91.82 | no |
| 125438 | thermophilic | thermophileⓘ | no | 83.89 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 83.19 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Archaea produce peptidoglycan hydrolases that kill bacteria | Strock R, Soo V, Misson P, Roumelioti G, Shliaha P, Hocher A, Warnecke T. | PLoS Biol | 2025 | |||
| L-rhamnose isomerase: a crucial enzyme for rhamnose catabolism and conversion of rare sugars. | Yoshida H, Izumori K, Yoshihara A. | Appl Microbiol Biotechnol | 10.1007/s00253-024-13325-w | 2024 | ||
| Improved methods for genetic manipulation of the alkaliphile Halalkalibacterium halodurans. | Wencker FDR, Lyon SE, Breaker RR. | Front Microbiol | 10.3389/fmicb.2024.1465811 | 2024 | ||
| Metabolism | Loss of alkalophily in cell-wall-component-defective mutants derived from alkalophilic Bacillus C-125. Isolation and partial characterization of the mutants. | Aono R, Ohtani M. | Biochem J | 1990 | ||
| Enzymology | Molecular cloning and characterization of a novel xylanase from Microbacterium imperiale YD-01. | Tang K, Cui Y, Xiao J, Ding M, Chao H, Wu J, Han Z, Liu J, Li X, Yan D | J Food Biochem | 10.1111/jfbc.13988 | 2021 | |
| Enzymology | Substrate Specificities of GH8, GH39, and GH52 beta-xylosidases from Bacillus halodurans C-125 Toward Substituted Xylooligosaccharides. | Teramoto K, Tsutsui S, Sato T, Fujimoto Z, Kaneko S | Appl Biochem Biotechnol | 10.1007/s12010-020-03451-2 | 2021 | |
| Enzymology | Homology modeling and heterologous expression of highly alkaline subtilisin-like serine protease from Bacillus halodurans C-125. | Tekin A, Uzuner U, Sezen K | Biotechnol Lett | 10.1007/s10529-020-03025-6 | 2020 | |
| Assessment of a Potential Role of Dickeya dadantii DSM 18020 as a Pectinase Producer for Utilization in Poultry Diets Based on in silico Analyses. | Dittoe DK, Barabote RD, Rothrock MJ, Ricke SC | Front Microbiol | 10.3389/fmicb.2020.00751 | 2020 | ||
| Enzymology | Functional Expression and Characterization of Acetyl Xylan Esterases CE Family 7 from Lactobacillus antri and Bacillus halodurans. | Kim MJ, Jang MU, Nam GH, Shin H, Song JR, Kim TJ | J Microbiol Biotechnol | 10.4014/jmb.2001.01004 | 2020 | |
| Enzymology | Characterization of recombinant endo-1,4-beta-xylanase of Bacillus halodurans C-125 and rational identification of hot spot amino acid residues responsible for enhancing thermostability by an in-silico approach. | Mahmood MS, Rasul F, Saleem M, Afroz A, Malik MF, Ashraf NM, Rashid U, Naz S, Zeeshan N | Mol Biol Rep | 10.1007/s11033-019-04751-5 | 2019 | |
| Mrp Antiporters Have Important Roles in Diverse Bacteria and Archaea. | Ito M, Morino M, Krulwich TA | Front Microbiol | 10.3389/fmicb.2017.02325 | 2017 | ||
| 4-O-Methyl Modifications of Glucuronic Acids in Xylans Are Indispensable for Substrate Discrimination by GH67 alpha-Glucuronidase from Bacillus halodurans C-125. | Yagi H, Maehara T, Tanaka T, Takehara R, Teramoto K, Yaoi K, Kaneko S | J Appl Glycosci (1999) | 10.5458/jag.jag.JAG-2017_016 | 2017 | ||
| Metabolism | Functional characterization of hormone sensitive-like lipase from Bacillus halodurans: synthesis and recovery of pNP-laurate with high yields. | Dua A, Gupta R | Extremophiles | 10.1007/s00792-017-0949-8 | 2017 | |
| Metabolism | Redesigning pH optimum of Geobacillus sp. TF16 endoxylanase through in silico designed DNA swapping strategy. | Uzuner U, Canakci S, Bektas KI, Sapmaz MT, Belduz AO | Biochimie | 10.1016/j.biochi.2017.03.017 | 2017 | |
| Pathogenicity | Narrow-spectrum inhibitors targeting an alternative menaquinone biosynthetic pathway of Helicobacter pylori. | Yamamoto T, Matsui H, Yamaji K, Takahashi T, Overby A, Nakamura M, Matsumoto A, Nonaka K, Sunazuka T, Omura S, Nakano H | J Infect Chemother | 10.1016/j.jiac.2016.05.012 | 2016 | |
| Metabolism | Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris. | Lin XQ, Liang SL, Han SY, Zheng SP, Ye YR, Lin Y | J Proteomics | 10.1016/j.jprot.2013.06.031 | 2013 | |
| Metabolism | Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation. | Clark TA, Lu X, Luong K, Dai Q, Boitano M, Turner SW, He C, Korlach J | BMC Biol | 10.1186/1741-7007-11-4 | 2013 | |
| Enzymology | Bleach boosting effect of xylanase A from Bacillus halodurans C-125 in ECF bleaching of wheat straw pulp. | Lin XQ, Han SY, Zhang N, Hu H, Zheng SP, Ye YR, Lin Y | Enzyme Microb Technol | 10.1016/j.enzmictec.2012.10.011 | 2012 | |
| Pathogenicity | OLE RNA protects extremophilic bacteria from alcohol toxicity. | Wallace JG, Zhou Z, Breaker RR | Nucleic Acids Res | 10.1093/nar/gks352 | 2012 | |
| Enzymology | Structure-based function discovery of an enzyme for the hydrolysis of phosphorylated sugar lactones. | Xiang DF, Kolb P, Fedorov AA, Xu C, Fedorov EV, Narindoshivili T, Williams HJ, Shoichet BK, Almo SC, Raushel FM | Biochemistry | 10.1021/bi201838b | 2012 | |
| Metabolism | The relationship between a coiled morphology and Mbl in alkaliphilic Bacillus halodurans C-125 at neutral pH values. | Fujinami S, Sato T, Ito M | Extremophiles | 10.1007/s00792-011-0389-9 | 2011 | |
| Enzymology | Multitechnique study on a recombinantly produced Bacillus halodurans laccase and an S-layer/laccase fusion protein. | Ferner-Ortner-Bleckmann J, Schrems A, Ilk N, Egelseer EM, Sleytr UB, Schuster B | Biointerphases | 10.1116/1.3589284 | 2011 | |
| Improved genetic transformation methods for the model alkaliphile Bacillus halodurans C-125. | Wallace JG, Breaker RR | Lett Appl Microbiol | 10.1111/j.1472-765X.2011.03017.x | 2011 | ||
| Enzymology | Characterization of a glucose-, xylose-, sucrose-, and D-galactose-stimulated beta-glucosidase from the alkalophilic bacterium Bacillus halodurans C-125. | Xu H, Xiong AS, Zhao W, Tian YS, Peng RH, Chen JM, Yao QH | Curr Microbiol | 10.1007/s00284-010-9766-3 | 2010 | |
| Metabolism | The C-terminal coiled-coil of the bacterial voltage-gated sodium channel NaChBac is not essential for tetramer formation, but stabilizes subunit-to-subunit interactions. | Mio K, Mio M, Arisaka F, Sato M, Sato C | Prog Biophys Mol Biol | 10.1016/j.pbiomolbio.2010.05.002 | 2010 | |
| Enzymology | Industrial applications of alkaliphiles and their enzymes--past, present and future. | Fujinami S, Fujisawa M | Environ Technol | 10.1080/09593331003762807 | 2010 | |
| Enzymology | Enhanced production and characterization of a beta-glucosidase from Bacillus halodurans expressed in Escherichia coli. | Naz S, Ikram N, Rajoka MI, Sadaf S, Akhtar MW | Biochemistry (Mosc) | 10.1134/s0006297910040164 | 2010 | |
| Metabolism | Expression and characterization of a xylosidase (Bxyl) from Bacillus halodurans C-125. | Liang Y, Li X, Shin H, Chen RR, Mao Z | Sheng Wu Gong Cheng Xue Bao | 2009 | ||
| Enzymology | Biocatalytic conversion of wheat bran hydrolysate using an immobilized GH43 beta-xylosidase. | Smaali I, Remond C, Skhiri Y, O'Donohue MJ | Bioresour Technol | 10.1016/j.biortech.2008.06.041 | 2008 | |
| Pathogenicity | Antibacterial activity of cyclodextrins against Bacillus strains. | Zhang HM, Li Z, Uematsu K, Kobayashi T, Horikoshi K | Arch Microbiol | 10.1007/s00203-008-0415-1 | 2008 | |
| Enzymology | Cloning, expression and characterization of a glycoside hydrolase family 39 xylosidase from Bacillus halodurans C-125. | Wagschal K, Franqui-Espiet D, Lee CC, Robertson GH, Wong DW | Appl Biochem Biotechnol | 10.1007/s12010-007-8055-5 | 2007 | |
| Enzymology | Purification of two putative type II NADH dehydrogenases with different substrate specificities from alkaliphilic Bacillus pseudofirmus OF4. | Liu J, Krulwich TA, Hicks DB | Biochim Biophys Acta | 10.1016/j.bbabio.2008.02.004 | 2008 | |
| Enzymology | Characterization of a new rhamnogalacturonan acetyl esterase from Bacillus halodurans C-125 with a new putative carbohydrate binding domain. | Navarro-Fernandez J, Martinez-Martinez I, Montoro-Garcia S, Garcia-Carmona F, Takami H, Sanchez-Ferrer A | J Bacteriol | 10.1128/JB.01104-07 | 2007 | |
| Enzymology | Cloning, characterization, and expression of xylanase A gene from Paenibacillus sp. DG-22 in Escherichia coli. | Lee TH, Lim PO, Lee YE | J Microbiol Biotechnol | 2007 | ||
| Enzymology | Molecular anatomy of the alkaliphilic xylanase from Bacillus halodurans C-125. | Nishimoto M, Fushinobu S, Miyanaga A, Kitaoka M, Hayashi K | J Biochem | 10.1093/jb/mvm072 | 2007 | |
| Enzymology | High-level heterologous expression of Bacillus halodurans putative xylanase xyn11a (BH0899) in Kluyveromyces lactis. | Wamalwa BM, Zhao G, Sakka M, Shiundu PM, Kimura T, Sakka K | Biosci Biotechnol Biochem | 10.1271/bbb.60477 | 2007 | |
| Phylogeny | Isolation and identification of two xylanase-producing extremely alkali-tolerant strains of Bacillus halodurans from Turpan in China. | Yi X, Xie ZJ, Deng AH, Wang N, Erkin R | Wei Sheng Wu Xue Bao | 2006 | ||
| Genetics | Identification of a novel two-peptide lantibiotic, haloduracin, produced by the alkaliphile Bacillus halodurans C-125. | Lawton EM, Cotter PD, Hill C, Ross RP | FEMS Microbiol Lett | 10.1111/j.1574-6968.2006.00539.x | 2007 | |
| Metabolism | Discovery and in vitro biosynthesis of haloduracin, a two-component lantibiotic. | McClerren AL, Cooper LE, Quan C, Thomas PM, Kelleher NL, van der Donk WA | Proc Natl Acad Sci U S A | 10.1073/pnas.0606088103 | 2006 | |
| Enzymology | Cloning and characterization of dihydrofolate reductase from a facultative alkaliphilic and halotolerant bacillus strain. | Redecke L, Brehm MA, Bredehorst R | Extremophiles | 10.1007/s00792-006-0013-6 | 2006 | |
| Phylogeny | Expression in Escherichia coli and characterization of beta-xylosidases GH39 and GH-43 from Bacillus halodurans C-125. | Smaali I, Remond C, O'Donohue MJ | Appl Microbiol Biotechnol | 10.1007/s00253-006-0512-5 | 2006 | |
| Enzymology | A primary sodium pump gene of the moderate halophile Halobacillus dabanensis exhibits secondary antiporter properties. | Yang L, Jiang J, Zhang B, Zhao B, Wang L, Yang SS | Biochem Biophys Res Commun | 10.1016/j.bbrc.2006.05.181 | 2006 | |
| Enzymology | Crystallization and preliminary X-ray analysis of reducing-end xylose-releasing exo-oligoxylanase from Bacillus halodurans C-125. | Honda Y, Fushinobu S, Hidaka M, Wakagi T, Shoun H, Kitaoka M | Acta Crystallogr Sect F Struct Biol Cryst Commun | 10.1107/S1744309105003635 | 2005 | |
| Enzymology | Employing chimeric xylanases to identify regions of an alkaline xylanase participating in enzyme activity at basic pH. | Nishimoto M, Kitaoka M, Hayashi K | J Biosci Bioeng | S1389-1723(02)80215-8 | 2002 | |
| A kinetic study on pH-activity relationship of XynA from alkaliphilic Bacillus halodurans C-125 using aryl-xylobiosides. | Nishimoto M, Honda Y, Kitaoka M, Hayashi K | J Biosci Bioeng | 10.1016/s1389-1723(02)80079-2 | 2002 | ||
| Metabolism | A structural and functional analysis of alpha-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition. | Boraston AB, Healey M, Klassen J, Ficko-Blean E, Lammerts van Bueren A, Law V | J Biol Chem | 10.1074/jbc.M509958200 | 2005 | |
| Enzymology | An alkali-inducible flotillin-like protein from Bacillus halodurans C-125. | Zhang HM, Li Z, Tsudome M, Ito S, Takami H, Horikoshi K | Protein J | 10.1007/s10930-004-1519-3 | 2005 | |
| Genetics | A novel beta-glucanase gene from Bacillus halodurans C-125. | Akita M, Kayatama K, Hatada Y, Ito S, Horikoshi K | FEMS Microbiol Lett | 10.1016/j.femsle.2005.05.009 | 2005 | |
| Enzymology | The role of conserved arginine residue in loop 4 of glycoside hydrolase family 10 xylanases. | Nishimoto M, Kitaoka M, Fushinobu S, Hayashi K | Biosci Biotechnol Biochem | 10.1271/bbb.69.904 | 2005 | |
| Enzymology | Structural basis for the specificity of the reducing end xylose-releasing exo-oligoxylanase from Bacillus halodurans C-125. | Fushinobu S, Hidaka M, Honda Y, Wakagi T, Shoun H, Kitaoka M | J Biol Chem | 10.1074/jbc.M413693200 | 2005 | |
| Enzymology | A family 8 glycoside hydrolase from Bacillus halodurans C-125 (BH2105) is a reducing end xylose-releasing exo-oligoxylanase. | Honda Y, Kitaoka M | J Biol Chem | 10.1074/jbc.M409832200 | 2004 | |
| Stress | Wide-range distribution of insertion sequences identified in B. halodurans among bacilli and a new transposon disseminated in alkaliphilic and thermophilic bacilli. | Takami H, Matsuki A, Takaki Y | DNA Res | 10.1093/dnares/11.3.153 | 2004 | |
| Enzymology | A cloned Bacillus halodurans multicopper oxidase exhibiting alkaline laccase activity. | Ruijssenaars HJ, Hartmans S | Appl Microbiol Biotechnol | 10.1007/s00253-004-1571-0 | 2004 | |
| Enzymology | Characterization of endo-beta-N-acetylglucosaminidase from alkaliphilic Bacillus halodurans C-125. | Fujita K, Takami H, Yamamoto K, Takegawa K | Biosci Biotechnol Biochem | 10.1271/bbb.68.1059 | 2004 | |
| Enzymology | The BH1999 protein of Bacillus halodurans C-125 is gentisyl-coenzyme A thioesterase. | Zhuang Z, Song F, Takami H, Dunaway-Mariano D | J Bacteriol | 10.1128/JB.186.2.393-399.2004 | 2004 | |
| Metabolism | A globin-coupled oxygen sensor from the facultatively alkaliphilic Bacillus halodurans C-125. | Hou S, Belisle C, Lam S, Piatibratov M, Sivozhelezov V, Takami H, Alam M | Extremophiles | 10.1007/s007920100220 | 2001 | |
| Genetics | Identification and distribution of new insertion sequences in the genome of alkaliphilic Bacillus halodurans C-125. | Takami H, Han CG, Takaki Y, Ohtsubo E | J Bacteriol | 10.1128/JB.183.14.4345-4356.2001 | 2001 | |
| Metabolism | The Na(+)-dependence of alkaliphily in Bacillus. | Krulwich TA, Ito M, Guffanti AA | Biochim Biophys Acta | 10.1016/s0005-2728(00)00285-1 | 2001 | |
| Genetics | Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis. | Takami H, Nakasone K, Takaki Y, Maeno G, Sasaki R, Masui N, Fuji F, Hirama C, Nakamura Y, Ogasawara N, Kuhara S, Horikoshi K | Nucleic Acids Res | 10.1093/nar/28.21.4317 | 2000 | |
| Metabolism | The Na+/H+ antiporter of alkaliphilic Bacillus sp. | Kitada M, Kosono S, Kudo T | Extremophiles | 10.1007/s007920070010 | 2000 | |
| Enzymology | Characterization and comparative study of the rrn operons of alkaliphilic Bacillus halodurans C-125. | Nakasone K, Masui N, Takaki Y, Sasaki R, Maeno G, Sakiyama T, Hirama C, Fuji F, Takami H | Extremophiles | 10.1007/pl00010713 | 2000 | |
| Metabolism | Analysis of the genome of an alkaliphilic Bacillus strain from an industrial point of view. | Takami H, Horikoshi K | Extremophiles | 10.1007/s007920050143 | 2000 | |
| Genetics | An automated system for genome analysis to support microbial whole-genome shotgun sequencing. | Sakiyama T, Takami H, Ogasawara N, Kuhara S, Kozuki T, Doga K, Ohyama A, Horikoshi K | Biosci Biotechnol Biochem | 10.1271/bbb.64.670 | 2000 | |
| Enzymology | Genetic analysis of the chromosome of alkaliphilic Bacillus halodurans C-125. | Takami H, Takaki Y, Nakasone K, Sakiyama T, Maeno G, Sasaki R, Hirama C, Fuji F, Masui N | Extremophiles | 10.1007/s007920050120 | 1999 | |
| Genetics | Replication origin region of the chromosome of alkaliphilic Bacillus halodurans C-125. | Takami H, Masui N, Nakasone K, Horikoshi K | Biosci Biotechnol Biochem | 10.1271/bbb.63.1134 | 1999 | |
| Reidentification of Facultatively Alkaliphilic Bacillus sp. C-125 to Bacillus halodurans. | Takami H, Horikoshi K | Biosci Biotechnol Biochem | 10.1271/bbb.63.943 | 1999 | ||
| Characteristics of the ErmK Protein of Bacillus halodurans C-125. | Kim SK, Min YH, Jin HJ | Microbiol Spectr | 10.1128/spectrum.02598-22 | 2022 |
| #7421 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18197 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
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