Name: Nocardiopsis alba A 92
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11180

Type strain:

Species: Nocardiopsis alba

Strain Designation: A 92

Culture col. no.: DSM 43377, JCM 9419, CDC W2536, BCRC 16256, IFM 10232, IFO 15097, IMSNU 22172, KCTC 9616, NBRC 15097, VKM Ac-1883, VTT E-99143

Strain history: DSM 43377 <-- M. Goodfellow A92 (Nocardiopsis dassonvillei) <-- W. A. Causey CDC W2536.

NCBI tax ID(s): 53437 (species)

SI-ID 265470

DSM 43377, JCM 9419, IFO 15097, VKM Ac-1883, KCTC 9616, NBRC 15097, BCRC 16256, CCRC 16256, VTT E-991433

Other strains from Nocardiopsis alba

N. alba DSM 43119, IMRU 711
N. alba DSM 43120, IMRU 1572
N. alba A119, DSM 43378, IMRU 714
N. alba 123, DSM 44412
N. alba 704a, DSM 44516
N. alba KS-21, DSM 44552

Section

Nocardiopsis alba A 92 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from drainage from hip.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Nocardiopsidaceae*
	Genus	*Nocardiopsis*
	Species	**Nocardiopsis alba**
	Full Scientific Name (LPSN)	Nocardiopsis alba corrig. Grund and Kroppenstedt 1990

Synonym

Nocardiopsis albus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

[Ref.: #10994]

Caption:

Medium 553 28°C

[Ref.: #10994]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10994]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #10994]

Culture medium growth

[Ref.: #10994]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10994]

Culture medium composition

expand / minimize

[Ref.: #10994]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10994]

Culture medium growth

[Ref.: #10994]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10994]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10994]	growth	28 °C
[Ref.: #18489]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10994]	Temperature range	mesophilic
[Ref.: #18489]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %91
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18489]		NaCl		maximum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18489]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18489]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18489]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18489]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18489]	mannitol ChEBI	+
[Ref.: #18489]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18489]	raffinose ChEBI	-
[Ref.: #18489]	rhamnose ChEBI	-
[Ref.: #18489]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18489]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18489]	71	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18489]	186	not determinedn.d.	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10994]	Sample type/isolated from	drainage from hip

[Ref.: #67770]	Sample type/isolated from	Drainage from hip
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Fluids	#Aspirate
#Host	#Human	-
#Host Body-Site	#Limb	#Leg

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X97883 (>99% sequence identity) for Nocardiopsis from Microbeatlas

Aquatic Samples	19
Soil Samples	41
Animal Samples	284
Plant Samples	6
Total Samples	350

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18489]	Biosafety level	1	German classification
[Ref.: #10994]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	N.alba 16S rRNA gene, strain DSM 43377T	X97883	1461	ENA	1245473 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardiopsis alba DSM 43377	GCA_000341225	contig	GenBank	1245473 tax ID
[Ref.: #66792]	Nocardiopsis alba DSM 43377	1245473.3	wgs	PATRIC	1245473 tax ID	*
[Ref.: #66792]	Nocardiopsis alba DSM 43377	2551306665	draft	JGI IMG/M	1245473 tax ID	*

[Ref.: #67770]

GC-content

69.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardiopsis alba DSM 43377 PATRIC: 1245473.3
[Ref.: #69481]	spore-forming	yes	91	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardiopsis alba DSM 43377 PATRIC: 1245473.3
[Ref.: #69480]	motile	no	92.467	no
[Ref.: #69480]	gram-positive	yes	93.016	no
[Ref.: #69480]	anaerobic	no	99.325	no
[Ref.: #69480]	aerobic	yes	93.048	no
[Ref.: #69480]	halophile	yes	70.177	no
[Ref.: #69480]	spore-forming	yes	92.772	no
[Ref.: #69480]	glucose-util	yes	87.033	yes
[Ref.: #69480]	flagellated	no	97.42	no
[Ref.: #69480]	thermophile	no	96.636	yes
[Ref.: #69480]	glucose-ferment	no	91.256	no

Availability in culture collections External links

[Ref.: #10994]

Culture collection no.

DSM 43377, JCM 9419, CDC W2536, BCRC 16256, IFM 10232, IFO 15097, IMSNU 22172, KCTC 9616, NBRC 15097, VKM Ac-1883, VTT E-99143

[Ref.: #80429]

SI-ID 265470

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Two strains of airborne Nocardiopsis alba producing different volatile organic compounds (VOCs) as biofungicide for Ganoderma boninense.	Widada J, Damayanti E, Alhakim MR, Yuwono T, Mustofa M	FEMS Microbiol Lett	10.1093/femsle/fnab138	2021	*
Phylogeny	Nocardiopsis algeriensis sp. nov., an alkalitolerant actinomycete isolated from Saharan soil.	Bouras N, Meklat A, Zitouni A, Mathieu F, Schumann P, Sproer C, Sabaou N, Klenk HP	Antonie Van Leeuwenhoek	10.1007/s10482-014-0329-7	2014	*
Phylogeny	Description of Nocardiopsis synnemataformans sp. nov., elevation of Nocardiopsis alba subsp. prasina to Nocardiopsis prasina comb. nov., and designation of Nocardiopsis antarctica and Nocardiopsis alborubida as later subjective synonyms of Nocardiopsis dassonvillei.	Yassin AF, Rainey FA, Burghardt J, Gierth D, Ungerechts J, Lux I, Seifert P, Bal C, Schaal KP	Int J Syst Bacteriol	10.1099/00207713-47-4-983	1997	*
	Novel cell-wall teichoic acid from Nocardiopsis albus subsp. albus as a species-specific marker.	Tul'skaya EM, Shashkov AS, Evtushenko LI, Taran VV, Naumova IB	Microbiology (Reading)	10.1099/13500872-141-8-1851	1995	*

References

#10994

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43377

#18489

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80429

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265470.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Nocardiopsis alba in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Nocardiopsis alba DSM 43377

Nocardiopsis alba DSM 43377

Change proposal

Change proposal