Nocardiopsis alba A 92 is a bacterium that was isolated from drainage from hip.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Streptosporangiales |
| Family Nocardiopsidaceae |
| Genus Nocardiopsis |
| Species Nocardiopsis alba |
| Full scientific name Nocardiopsis alba corrig. Grund and Kroppenstedt 1990 |
| Synonyms (1) |
| BacDive ID | Other strains from Nocardiopsis alba (6) | Type strain |
|---|---|---|
| 11178 | N. alba DSM 43119, IMRU 711 | |
| 11179 | N. alba DSM 43120, IMRU 1572 | |
| 11181 | N. alba A119, DSM 43378, IMRU 714 | |
| 11182 | N. alba 123, DSM 44412 | |
| 11183 | N. alba 704a, DSM 44516 | |
| 11184 | N. alba KS-21, DSM 44552 |
| @ref: | 10994 |
| multimedia content: | DSM_43377.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_43377.jpg |
| caption: | Medium 553 28°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 10994 | GPHF-MEDIUM (DSMZ Medium 553) | Medium recipe at MediaDive | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water | ||
| 10994 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 18489 | NaCl | positive | maximum | 2.5 % |
| 67770 | Observationquinones: MK-10(H4), MK-10(H6) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18489 | 22599 ChEBI | arabinose | - | ||
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 18489 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 18489 | 28757 ChEBI | fructose | - | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 18489 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 18489 | 29864 ChEBI | mannitol | + | ||
| 18489 | 17268 ChEBI | myo-inositol | - | ||
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 18489 | 16634 ChEBI | raffinose | - | ||
| 18489 | 26546 ChEBI | rhamnose | - | ||
| 18489 | 17992 ChEBI | sucrose | + | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 18489 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | + | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Patient | - | |
| #Host Body Product | #Fluids | #Aspirate | |
| #Host | #Human | - | |
| #Host Body-Site | #Limb | #Leg |
Global distribution of 16S sequence X97883 (>99% sequence identity) for Nocardiopsis from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | SOAPdenovo1.06 assembly for Nocardiopsis alba DSM 43377 | contig | 1245473 | 67.79 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | N.alba 16S rRNA gene, strain DSM 43377T | X97883 | 1461 | 1245473 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN686616 | 516 | 53437 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN686696 | 516 | 53437 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN688253 | 525 | 53437 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN688674 | 534 | 53437 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN688677 | 502 | 53437 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN686671 | 544 | 53437 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN687850 | 525 | 53437 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN686659 | 545 | 53437 | ||
| 124043 | Nocardiopsis alba strain DSM 43377(T) 16S ribosomal RNA gene, partial sequence. | MN688649 | 538 | 53437 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 69.8 | genome sequence analysis |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 97.32 | no |
| 125439 | motility | BacteriaNetⓘ | no | 93.84 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 86.98 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 74.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.39 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.63 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 87.77 | no |
| 125438 | aerobic | aerobicⓘ | yes | 92.32 | no |
| 125438 | thermophilic | thermophileⓘ | no | 92.16 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| iChip-Inspired Isolation, Bioactivities and Dereplication of Actinomycetota from Portuguese Beach Sediments. | Dos Santos JDN, Joao SA, Martin J, Vicente F, Reyes F, Lage OM. | Microorganisms | 10.3390/microorganisms10071471 | 2022 | ||
| Phylogeny | Isolation and identification of endophytic actinobacteria from Citrullus colocynthis (L.) Schrad and their antibacterial properties. | Ali AR, Bahrami Y, Kakaei E, Mohammadzadeh S, Bouk S, Jalilian N. | Microb Cell Fact | 10.1186/s12934-022-01936-9 | 2022 | |
| Genetics | Phylogenomic insights support the merger of the genera Mameliella and Maliponia into the genus Antarctobacter. | Xu X, Li X, Xue Q, Liu A. | BMC Genomics | 10.1186/s12864-025-12173-w | 2025 | |
| Response surface optimization for cellulase production from Enterococcus faecium and Stutzerimonas stutzeri isolated from Gossypium arboretum and Solanum melongena soil. | Shaikh M, Makarani N, Kumar K. | Sci Rep | 10.1038/s41598-025-10256-y | 2025 | ||
| Modular Low-Copy-Number Plasmid Vectors for Rhodobacterales with Extended Host Range in Alphaproteobacteria. | Korner D, Schafer NM, Lagares A, Birmes L, Oehlmann NN, Addison H, Pohl S, Thanbichler M, Rebelein JG, Petersen J, Becker A. | ACS Synth Biol | 10.1021/acssynbio.4c00062 | 2024 | ||
| An airborne actinobacteria Nocardiopsis alba isolated from bioaerosol of a mushroom compost facility. | Pasciak M, Pawlik K, Gamian A, Szponar B, Skora J, Gutarowska B. | Aerobiologia (Bologna) | 10.1007/s10453-014-9336-4 | 2014 | ||
| Bioactive Natural Products in Actinobacteria Isolated in Rainwater From Storm Clouds Transported by Western Winds in Spain. | Sarmiento-Vizcaino A, Martin J, Reyes F, Garcia LA, Blanco G. | Front Microbiol | 10.3389/fmicb.2021.773095 | 2021 | ||
| Phylogeny | Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panicea. | Schneemann I, Nagel K, Kajahn I, Labes A, Wiese J, Imhoff JF. | Appl Environ Microbiol | 10.1128/aem.00780-10 | 2010 | |
| Enzymology | Semi-rational design and modification of imine reductases and their utilization for the synthesis of (S)-nornicotine. | Du Z, Li H, Kuang X, Zhang L, Li S. | Bioorg Chem | 10.1016/j.bioorg.2025.108705 | 2025 | |
| Phylogeny | Biological activities and metabolomic profiles of extracts from the marine sediment bacterium Nocardiopsis alba DP1B cultivated in different media. | Nofiani R, Ardiningsih P, Rudiyansyah, Padupu D, Rizky, Amalia DA, Octaviana S, Sukito A, Setiyoningrum F, Weisberg AJ, Mahmud T. | Microb Pathog | 10.1016/j.micpath.2024.106702 | 2024 | |
| Enzymology | Important ecophysiological roles of Nocardiopsis in lignocellulose degradation during aerobic compost with humic acid addition. | Wang Z, Yin B, Ao G, Yang L, Ma Y, Shi Y, Sun S, Ling H. | J Environ Manage | 10.1016/j.jenvman.2024.123901 | 2025 | |
| Dual-functionality of Nocardiopsis alba B57 in biocontrol and plant growth: a metabolomic approach to agricultural sustainability. | Abdalla Abdelshafy Mohamad O, Liu YH, Elsamahy T, Li S, Govindan R, Kuchkarova N, Hatab S, Zhang Y, Li WJ. | NPJ Biofilms Microbiomes | 10.1038/s41522-025-00796-6 | 2025 | ||
| Genetics | Comprehensive whole metagenomics analysis uncovers microbial community and resistome variability across anthropogenically contaminated soils in urban and suburban areas of Tamil Nadu, India. | Vasanthrao R, Nidhin IK, Taj Z, Chattopadhyay I. | Front Microbiol | 10.3389/fmicb.2025.1649872 | 2025 | |
| Metabolic capabilities of key rumen microbiota drive methane emissions in cattle. | Lai W, Alberdi A, Leu A, de Leon AVP, Kobel CM, Aho VTE, Roehe R, Pope PB, Hvidsten TR. | mSystems | 10.1128/msystems.00601-25 | 2025 | ||
| Endophytic actinomycetes promote growth and fruits quality of tomato (Solanum lycopersicum): an approach for sustainable tomato production. | Khomampai J, Jeeatid N, Kaeomuangmoon T, Pathom-Aree W, Rangseekaew P, Yosen T, Khongdee N, Chromkaew Y. | PeerJ | 10.7717/peerj.17725 | 2024 | ||
| Genetics | In silico exploration of biosynthetic gene clusters in marine Streptomyces sp. and Nocardiopsis sp. from the western coast of India: Genome-based profiling using whole genome sequencing. | Kumar H, Vijayakumar S, Shintre N, Tamhane V, Deshpande N, Joshi T, Mathpal S, Anbarasu A, Ramaiah S. | J Genet Eng Biotechnol | 10.1016/j.jgeb.2025.100483 | 2025 | |
| Lipolytic Nocardiopsis for reduction of pollution load in textile industry effluent and SWISS model for structural study of lipase. | Patel GB, Rakholiya P, Shindhal T, Varjani S, Tabhani NM, Shah KR. | Bioresour Technol | 10.1016/j.biortech.2021.125673 | 2021 | ||
| Efficacy of two different microbial consortia on salinity tolerance in chickpea: an in-planta evaluation on biochemical, histochemical, and genomic aspects. | Sathya A, Rehman V, Srinivas V, Kudapa H, Gopalakrishnan S. | 3 Biotech | 10.1007/s13205-024-04124-1 | 2024 | ||
| Genetic and Phenotypic Heterogeneity of the Nocardiopsis alba Strains of Seawater. | Rathore DS, Sheikh MA, Gohel SD, Singh SP. | Curr Microbiol | 10.1007/s00284-021-02420-0 | 2021 | ||
| Enzymology | A novel substituted derivative of sterol from marine actinomycetes Nocardiopsis alba MCCB 110 antagonistic to the aquaculture pathogen Vibrio harveyi. | Sunish KS, Sreedharan P, Daniel S, Biji M, Rosamma P, Sukumaran V, Mohandas A, Singh ISB. | Microb Pathog | 10.1016/j.micpath.2021.104967 | 2021 | |
| Marine actinomycetes Nocardiopsis alba MCCB 110 has immunomodulatory property in the tiger shrimp Penaeus monodon. | Sunish KS, Biji M, Rosamma P, Sudheer NS, Sreedharan K, Mohandas A, Singh ISB. | Fish Shellfish Immunol | 10.1016/j.fsi.2020.03.069 | 2020 | ||
| Rhizospheric-Derived Nocardiopsis alba BH35 as an Effective Biocontrol Agent Actinobacterium with Antifungal and Plant Growth-Promoting Effects: In Vitro Studies. | El-Sayed MH, Kobisi AEA, Elsehemy IA, El-Sakhawy MA. | J Microbiol Biotechnol | 10.4014/jmb.2301.01001 | 2023 | ||
| The effect of WWTP products amendments on Phaseolus vulgaris rhizosphere and its ability to inactivate clarithromycin. | Kotrbova L, Grabicova K, Svecova H, Stanova AV, Petrlikova M, Grabic R, Kodesova R, Chronakova A. | Sci Rep | 10.1038/s41598-025-14953-6 | 2025 | ||
| Metabolism | Catalytic, thermodynamic and structural properties of an immobilized and highly thermostable alkaline protease from a haloalkaliphilic actinobacteria, Nocardiopsis alba TATA-5. | Thakrar FJ, Singh SP. | Bioresour Technol | 10.1016/j.biortech.2019.01.058 | 2019 | |
| The Screening of Potassium- and Phosphate-Solubilizing Actinobacteria and the Assessment of Their Ability to Promote Wheat Growth Parameters. | Boubekri K, Soumare A, Mardad I, Lyamlouli K, Hafidi M, Ouhdouch Y, Kouisni L. | Microorganisms | 10.3390/microorganisms9030470 | 2021 | ||
| Synergistic Plant-Microbe Interactions between Endophytic Actinobacteria and Their Role in Plant Growth Promotion and Biological Control of Cotton under Salt Stress. | Mohamad OAA, Liu YH, Li L, Ma JB, Huang Y, Gao L, Fang BZ, Wang S, El-Baz AF, Jiang HC, Li WJ. | Microorganisms | 10.3390/microorganisms10050867 | 2022 | ||
| Investigation of a Natural Antibiotic's Properties Effective against Resistant Opportunistic Pathogenic Infections. | Khassenova A, Shorabayev Y, Zhantlessova S, Baimakhanova B, Sultanova A, Yelubaeva M. | J Microbiol Biotechnol | 10.4014/jmb.2409.09018 | 2025 | ||
| Metabolism | Marine actinomycetes as bioremediators in Penaeus monodon rearing system. | Babu DT, Archana K, Kachiprath B, Solomon S, Jayanath G, Singh ISB, Philip R. | Fish Shellfish Immunol | 10.1016/j.fsi.2018.01.037 | 2018 | |
| Improving the efficiency of phosphate rocks combined with phosphate solubilizing Actinomycetota to increase wheat growth under alkaline and acidic soils. | Boubekri K, Soumare A, Lyamlouli K, Ouhdouch Y, Hafidi M, Kouisni L. | Front Plant Sci | 10.3389/fpls.2023.1154372 | 2023 | ||
| Transcriptomic analysis of two endophytes involved in enhancing salt stress ability of Arabidopsis thaliana. | Dong ZY, Narsing Rao MP, Wang HF, Fang BZ, Liu YH, Li L, Xiao M, Li WJ. | Sci Total Environ | 10.1016/j.scitotenv.2019.05.483 | 2019 | ||
| Metabolism | Quinazoline derivative from indigenous isolate, Nocardiopsis alba inhibits human telomerase enzyme. | Kiran KG, Thandeeswaran M, Ayub Nawaz KA, Easwaran M, Jayagopi KK, Ebrahimi L, Palaniswamy M, Mahendran R, Angayarkanni J. | J Appl Microbiol | 10.1111/jam.13281 | 2016 | |
| Liquid formulation of halo-alkali-thermo-tolerant rhizobacteria for enhanced growth of mung bean crops under abiotic stresses. | Vaghela NR, Gohel SD. | Sci Rep | 10.1038/s41598-025-05883-4 | 2025 | ||
| Analysis of the biosynthesis of antibacterial cyclic dipeptides in Nocardiopsis alba. | Li Y, Lai YM, Lu Y, Yang YL, Chen S. | Arch Microbiol | 10.1007/s00203-014-1015-x | 2014 | ||
| Phylogeny | Novel glutaminase free L-asparaginase from Nocardiopsis alba NIOT-VKMA08: production, optimization, functional and molecular characterization. | Meena B, Anburajan L, Dheenan PS, Begum M, Vinithkumar NV, Dharani G, Kirubagaran R. | Bioprocess Biosyst Eng | 10.1007/s00449-014-1277-3 | 2015 | |
| The Rare Actinobacterium Crossiella sp. Is a Potential Source of New Bioactive Compounds with Activity against Bacteria and Fungi. | Gonzalez-Pimentel JL, Dominguez-Monino I, Jurado V, Laiz L, Caldeira AT, Saiz-Jimenez C. | Microorganisms | 10.3390/microorganisms10081575 | 2022 | ||
| Metabolism | Natural Product Potential of the Genus Nocardiopsis. | Ibrahim AH, Desoukey SY, Fouad MA, Kamel MS, Gulder TAM, Abdelmohsen UR. | Mar Drugs | 10.3390/md16050147 | 2018 | |
| Enzymology | New diketopiperazine derivatives from a deep-sea-derived Nocardiopsis alba SCSIO 03039. | Zhang Q, Li S, Chen Y, Tian X, Zhang H, Zhang G, Zhu Y, Zhang S, Zhang W, Zhang C. | J Antibiot (Tokyo) | 10.1038/ja.2012.88 | 2013 | |
| Conditional Forest Models Built Using Metagenomic Data Accurately Predicted Salmonella Contamination in Northeastern Streams. | Chung T, Yan R, Weller DL, Kovac J. | Microbiol Spectr | 10.1128/spectrum.00381-23 | 2023 | ||
| Phylogeny | Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees. | Qiao J, Chen L, Li Y, Wang J, Zhang W, Chen S. | J Bacteriol | 10.1128/jb.01522-12 | 2012 | |
| Combined Soil Microorganism Amendments and Foliar Micronutrient Nanofertilization Increased the Production of Allium cepa L. through Aquaporin Gene Regulation. | Berna-Sicilia JA, Quizhpe-Romero M, Hurtado-Navarro M, Pascual JA, Carvajal M, Barzana G. | Life (Basel) | 10.3390/life14010004 | 2023 | ||
| Phylogeny | The Potential of Phylogenetically Diverse Culturable Actinobacteria from Litopenaeus vannamei Pond Sediment as Extracellular Proteolytic and Lipolytic Enzyme Producers. | Ayuningrum D, Sabdaningsih A, Jati OE. | Trop Life Sci Res | 10.21315/tlsr2022.33.3.10 | 2022 | |
| Exploring the decolorization efficiency and biodegradation mechanisms of different functional textile azo dyes by Streptomyces albidoflavus 3MGH. | El Awady ME, El-Shall FN, Mohamed GE, Abd-Elaziz AM, Abdel-Monem MO, Hassan MG. | BMC Microbiol | 10.1186/s12866-024-03347-9 | 2024 | ||
| Enzymology | Reliable and reproducible method for rapid identification of Nocardia species by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. | Toyokawa M, Kimura K, Nishi I, Sunada A, Ueda A, Sakata T, Asari S. | Rinsho Biseibutshu Jinsoku Shindan Kenkyukai Shi | 2013 | ||
| Optimization of Melanin Production by Streptomyces antibioticus NRRL B-1701 Using Arthrospira (Spirulina) platensis Residues Hydrolysates as Low-Cost L-tyrosine Supplement. | Kraseasintra O, Sensupa S, Mahanil K, Yoosathaporn S, Pekkoh J, Srinuanpan S, Pathom-Aree W, Pumas C. | BioTech (Basel) | 10.3390/biotech12010024 | 2023 | ||
| Metabolism | Production and characterization of lipopeptide biosurfactant by a sponge-associated marine actinomycetes Nocardiopsis alba MSA10. | Gandhimathi R, Seghal Kiran G, Hema TA, Selvin J, Rajeetha Raviji T, Shanmughapriya S. | Bioprocess Biosyst Eng | 10.1007/s00449-009-0309-x | 2009 | |
| Genetics | Genomic and metabolomic insights into the antimicrobial compounds and plant growth-promoting potential of Bacillus velezensis Q-426. | Wang L, Fan R, Ma H, Sun Y, Huang Y, Wang Y, Guo Q, Ren X, Xu L, Zhao J, Zhang L, Xu Y, Jin L, Dong Y, Quan C. | BMC Genomics | 10.1186/s12864-023-09662-1 | 2023 | |
| Biotechnology | Microbial production of melanin and its various applications. | Tran-Ly AN, Reyes C, Schwarze FWMR, Ribera J. | World J Microbiol Biotechnol | 10.1007/s11274-020-02941-z | 2020 | |
| Probiotic Effects of a Marine Purple Non-Sulfur Bacterium, Rhodovulum sulfidophilum KKMI01, on Kuruma Shrimp (Marsupenaeus japonicus). | Koga A, Goto M, Hayashi S, Yamamoto S, Miyasaka H. | Microorganisms | 10.3390/microorganisms10020244 | 2022 | ||
| Sorghum-Phosphate Solubilizers Interactions: Crop Nutrition, Biotic Stress Alleviation, and Yield Optimization. | Rizvi A, Ahmed B, Khan MS, Umar S, Lee J. | Front Plant Sci | 10.3389/fpls.2021.746780 | 2021 | ||
| Overexpression of Bacillus circulans alkaline protease in Bacillus subtilis and its potential application for recovery of protein from soybean dregs. | Chen H, Wu J, Huang X, Feng X, Ji H, Zhao L, Wang J. | Front Microbiol | 10.3389/fmicb.2022.968439 | 2022 | ||
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| Isolation and screening of Streptomyces sp. Al-Dhabi-49 from the environment of Saudi Arabia with concomitant production of lipase and protease in submerged fermentation. | Al-Dhabi NA, Esmail GA, Ghilan AM, Arasu MV. | Saudi J Biol Sci | 10.1016/j.sjbs.2019.11.011 | 2020 | ||
| 2-Methoxy-1,4-naphthoquinone regulated molecular alternation of Fusarium proliferatum revealed by high-dimensional biological data. | Yang J, Xia X, Guo M, Zhong L, Zhang X, Duan X, Liu J, Huang R. | RSC Adv | 10.1039/d2ra02425j | 2022 | ||
| Isolation of Smenopyrone, a Bis-gamma-Pyrone Polypropionate from the Caribbean Sponge Smenospongia aurea. | Esposito G, Teta R, Della Sala G, Pawlik JR, Mangoni A, Costantino V. | Mar Drugs | 10.3390/md16080285 | 2018 | ||
| Melanin-templated rapid synthesis of silver nanostructures. | Kiran GS, Dhasayan A, Lipton AN, Selvin J, Arasu MV, Al-Dhabi NA. | J Nanobiotechnology | 10.1186/1477-3155-12-18 | 2014 | ||
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| Multiple Potential Plant Growth Promotion Activities of Endemic Streptomyces spp. from Moroccan Sugar Beet Fields with Their Inhibitory Activities against Fusarium spp. | Aallam Y, Maliki BE, Dhiba D, Lemriss S, Souiri A, Haddioui A, Tarkka M, Hamdali H. | Microorganisms | 10.3390/microorganisms9071429 | 2021 | ||
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| Biodecolorization and Biodegradation of Azo Dye Reactive Orange-16 by Marine Nocardiopsis sp. | Chittal V, Gracias M, Anu A, Saha P, Bhaskara Rao KV. | Iran J Biotechnol | 10.29252/ijb.1551 | 2019 | ||
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| Structural and mechanistic exploration of acid resistance: kinetic stability facilitates evolution of extremophilic behavior. | Kelch BA, Eagen KP, Erciyas FP, Humphris EL, Thomason AR, Mitsuiki S, Agard DA. | J Mol Biol | 10.1016/j.jmb.2007.02.032 | 2007 | ||
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| Biotechnology | Class IV Lasso Peptides Synergistically Induce Proliferation of Cancer Cells and Sensitize Them to Doxorubicin. | Guerrero-Garzon JF, Madland E, Zehl M, Singh M, Rezaei S, Aachmann FL, Courtade G, Urban E, Ruckert C, Busche T, Kalinowski J, Cao YR, Jiang Y, Jiang CL, Selivanova G, Zotchev SB. | iScience | 10.1016/j.isci.2020.101785 | 2020 | |
| Melanin-Associated Synthesis of SERS-Active Nanostructures and the Application for Monitoring of Intracellular Melanogenesis. | Dong H, Liu Z, Zhong H, Yang H, Zhou Y, Hou Y, Long J, Lin J, Guo Z. | Nanomaterials (Basel) | 10.3390/nano7030070 | 2017 | ||
| Cloning, Expression, and Structural Elucidation of a Biotechnologically Potential Alkaline Serine Protease From a Newly Isolated Haloalkaliphilic Bacillus lehensis JO-26. | Bhatt HB, Singh SP. | Front Microbiol | 10.3389/fmicb.2020.00941 | 2020 | ||
| Enzymology | Genome-guided Investigation of Antibiotic Substances produced by Allosalinactinospora lopnorensis CA15-2(T) from Lop Nor region, China. | Huang C, Leung RK, Guo M, Tuo L, Guo L, Yew WW, Lou I, Lee SMY, Sun C. | Sci Rep | 10.1038/srep20667 | 2016 | |
| Enzymology | Laccase activity of the ascomycete fungus Nectriella pironii and innovative strategies for its production on leaf litter of an urban park. | Goralczyk-Binkowska A, Jasinska A, Dlugonski A, Plocinski P, Dlugonski J. | PLoS One | 10.1371/journal.pone.0231453 | 2020 | |
| Pathogenicity | A Trifecta of New Insights into Ovine Footrot for Infection Drivers, Immune Response, and Host-Pathogen Interactions. | Blanchard AM, Staley CE, Shaw L, Wattegedera SR, Baumbach CM, Michler JK, Rutland C, Back C, Newbold N, Entrican G, Totemeyer S. | Infect Immun | 10.1128/iai.00270-21 | 2021 | |
| Decolorization of azo dyes by a novel aerobic bacterial strain Bacillus cereus strain ROC. | Fareed A, Zaffar H, Bilal M, Hussain J, Jackson C, Naqvi TA. | PLoS One | 10.1371/journal.pone.0269559 | 2022 | ||
| Metabolism | A Bioactive Fraction from Streptomyces sp. Enhances Maize Tolerance against Drought Stress. | Warrad M, Hassan YM, Mohamed MSM, Hagagy N, Al-Maghrabi OA, Selim S, Saleh AM, AbdElgawad H. | J Microbiol Biotechnol | 10.4014/jmb.2003.03034 | 2020 | |
| Phylogeny | The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. | Rainey FA, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E. | Int J Syst Bacteriol | 10.1099/00207713-46-4-1088 | 1996 | |
| Metabolism | Use of Flavin-Containing Monooxygenases for Conversion of Trimethylamine in Salmon Protein Hydrolysates. | Goris M, Puntervoll P, Rojo D, Claussen J, Larsen O, Garcia-Moyano A, Almendral D, Barbas C, Ferrer M, Bjerga GEK. | Appl Environ Microbiol | 10.1128/aem.02105-20 | 2020 | |
| Ketide Synthase (KS) Domain Prediction and Analysis of Iterative Type II PKS Gene in Marine Sponge-Associated Actinobacteria Producing Biosurfactants and Antimicrobial Agents. | Selvin J, Sathiyanarayanan G, Lipton AN, Al-Dhabi NA, Valan Arasu M, Kiran GS. | Front Microbiol | 10.3389/fmicb.2016.00063 | 2016 | ||
| Enzymology | Stenotrophomonas-Like Bacteria Are Widespread Symbionts in Cone Snail Venom Ducts. | Torres JP, Tianero MD, Robes JMD, Kwan JC, Biggs JS, Concepcion GP, Olivera BM, Haygood MG, Schmidt EW. | Appl Environ Microbiol | 10.1128/aem.01418-17 | 2017 | |
| Metabolism | Actinomycetes Enrich Soil Rhizosphere and Improve Seed Quality as well as Productivity of Legumes by Boosting Nitrogen Availability and Metabolism. | AbdElgawad H, Abuelsoud W, Madany MMY, Selim S, Zinta G, Mousa ASM, Hozzein WN. | Biomolecules | 10.3390/biom10121675 | 2020 | |
| Isolation and Identification of Talaromyces sp. Strain Q2 and Its Biocontrol Mechanisms Involved in the Control of Fusarium Wilt. | Tian Y, Zhao Y, Fu X, Yu C, Gao K, Liu H. | Front Microbiol | 10.3389/fmicb.2021.724842 | 2021 | ||
| Metabolism | A bacterial source for mollusk pyrone polyketides. | Lin Z, Torres JP, Ammon MA, Marett L, Teichert RW, Reilly CA, Kwan JC, Hughen RW, Flores M, Tianero MD, Peraud O, Cox JE, Light AR, Villaraza AJ, Haygood MG, Concepcion GP, Olivera BM, Schmidt EW. | Chem Biol | 10.1016/j.chembiol.2012.10.019 | 2013 | |
| Metabolism | Streptomyces luridus So3.2 from Antarctic soil as a novel producer of compounds with bioemulsification potential. | Lamilla C, Braga D, Castro R, Guimaraes C, V A de Castilho L, Freire DMG, Barrientos L. | PLoS One | 10.1371/journal.pone.0196054 | 2018 | |
| Biogenic Silver Nanoparticles: What We Know and What Do We Need to Know? | Rai M, Ingle AP, Trzcinska-Wencel J, Wypij M, Bonde S, Yadav A, Kratosova G, Golinska P. | Nanomaterials (Basel) | 10.3390/nano11112901 | 2021 | ||
| Phylogeny | Shifts in bacterial communities of two Caribbean reef-building coral species affected by white plague disease. | Cardenas A, Rodriguez-R LM, Pizarro V, Cadavid LF, Arevalo-Ferro C. | ISME J | 10.1038/ismej.2011.123 | 2012 | |
| Antibacterial and Antioxidant Activities of Novel Actinobacteria Strain Isolated from Gulf of Khambhat, Gujarat. | Dholakiya RN, Kumar R, Mishra A, Mody KH, Jha B. | Front Microbiol | 10.3389/fmicb.2017.02420 | 2017 | ||
| Antibacterial, Anticancer and Neuroprotective Activities of Rare Actinobacteria from Mangrove Forest Soils. | Azman AS, Othman I, Fang CM, Chan KG, Goh BH, Lee LH. | Indian J Microbiol | 10.1007/s12088-016-0627-z | 2017 | ||
| Pathogenicity | Synthesis of Nm-PHB (nanomelanin-polyhydroxy butyrate) nanocomposite film and its protective effect against biofilm-forming multi drug resistant Staphylococcus aureus. | Kiran GS, Jackson SA, Priyadharsini S, Dobson ADW, Selvin J. | Sci Rep | 10.1038/s41598-017-08816-y | 2017 | |
| Pathogenicity | Evolutionary stability of antibiotic protection in a defensive symbiosis. | Engl T, Kroiss J, Kai M, Nechitaylo TY, Svatos A, Kaltenpoth M. | Proc Natl Acad Sci U S A | 10.1073/pnas.1719797115 | 2018 | |
| Metabolism | A new genome-mining tool redefines the lasso peptide biosynthetic landscape. | Tietz JI, Schwalen CJ, Patel PS, Maxson T, Blair PM, Tai HC, Zakai UI, Mitchell DA. | Nat Chem Biol | 10.1038/nchembio.2319 | 2017 | |
| Phylogeny | A novel taxonomic marker that discriminates between morphologically complex actinomycetes. | Girard G, Traag BA, Sangal V, Mascini N, Hoskisson PA, Goodfellow M, van Wezel GP. | Open Biol | 10.1098/rsob.130073 | 2013 | |
| Intra-molecular chaperone: the role of the N-terminal in conformational selection and kinetic control. | Tsai CJ, Ma B, Nussinov R. | Phys Biol | 10.1088/1478-3975/6/1/013001 | 2009 | ||
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Metabolism | Two strains of airborne Nocardiopsis alba producing different volatile organic compounds (VOCs) as biofungicide for Ganoderma boninense. | Widada J, Damayanti E, Alhakim MR, Yuwono T, Mustofa M | FEMS Microbiol Lett | 10.1093/femsle/fnab138 | 2021 | |
| Novel cell-wall teichoic acid from Nocardiopsis albus subsp. albus as a species-specific marker. | Tul'skaya EM, Shashkov AS, Evtushenko LI, Taran VV, Naumova IB | Microbiology (Reading) | 10.1099/13500872-141-8-1851 | 1995 | ||
| Nocardiopsis eucommiae sp. nov., a novel endophytic actinomycete isolated from leaves of Eucommia ulmoides Oliv. | Mo P, Chen Y, Zou F, Zhou J, Zou W, Gao J. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005654 | 2022 | ||
| Nocardia halotolerans sp. nov., a halotolerant actinomycete isolated from saline soil. | Moshtaghi Nikou M, Ramezani M, Ali Amoozegar M, Rasooli M, Harirchi S, Shahzadeh Fazeli SA, Schumann P, Sproer C, Ventosa A. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000394 | 2015 | ||
| Phylogeny | Brevundimonas denitrificans sp. nov., a denitrifying bacterium isolated from deep subseafloor sediment. | Tsubouchi T, Koyama S, Mori K, Shimane Y, Usui K, Tokuda M, Tame A, Uematsu K, Maruyama T, Hatada Y. | Int J Syst Evol Microbiol | 10.1099/ijs.0.067199-0 | 2014 | |
| Phylogeny | Litorisediminicola beolgyonensis gen. nov., sp. nov., isolated from a coastal sediment. | Yoon JH, Lee SY, Jung YT, Lee JS, Lee KC. | Int J Syst Evol Microbiol | 10.1099/ijs.0.043588-0 | 2013 | |
| Phylogeny | Brevundimonas viscosa sp. nov., isolated from saline soil. | Wang J, Zhang J, Ding K, Xin Y, Pang H. | Int J Syst Evol Microbiol | 10.1099/ijs.0.035352-0 | 2012 | |
| Genetics | Mameliella sediminis sp. nov., a novel polyhydroxyalkanoate-accumulating bacterium. | Zheng WS, Zhai SQ, Zhang MJ, Huang Y. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005274 | 2022 | |
| Phylogeny | Nocardiopsis yanglingensis sp. nov., a thermophilic strain isolated from a compost of button mushrooms. | Yan X, Yan H, Liu Z, Liu X, Mo H, Zhang L. | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9597-7 | 2011 | |
| Enzymology | Nocardiopsis aegyptia sp. nov., isolated from marine sediment. | Sabry SA, Ghanem NB, Abu-Ella GA, Schumann P, Stackebrandt E, Kroppenstedt RM. | Int J Syst Evol Microbiol | 10.1099/ijs.0.02814-0 | 2004 | |
| Phylogeny | Nocardiopsis compostus sp. nov., from the atmosphere of a composting facility. | Kampfer P, Busse HJ, Rainey FA. | Int J Syst Evol Microbiol | 10.1099/00207713-52-2-621 | 2002 | |
| Phylogeny | Nocardiopsis algeriensis sp. nov., an alkalitolerant actinomycete isolated from Saharan soil. | Bouras N, Meklat A, Zitouni A, Mathieu F, Schumann P, Sproer C, Sabaou N, Klenk HP | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0329-7 | 2014 | |
| Phylogeny | Description of Nocardiopsis synnemataformans sp. nov., elevation of Nocardiopsis alba subsp. prasina to Nocardiopsis prasina comb. nov., and designation of Nocardiopsis antarctica and Nocardiopsis alborubida as later subjective synonyms of Nocardiopsis dassonvillei. | Yassin AF, Rainey FA, Burghardt J, Gierth D, Ungerechts J, Lux I, Seifert P, Bal C, Schaal KP | Int J Syst Bacteriol | 10.1099/00207713-47-4-983 | 1997 |
| #10994 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43377 |
| #18489 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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