Nocardiopsis dassonvillei subsp. dassonvillei (DSM 43111, ATCC 23218, IAM 14287)

Name: Nocardiopsis dassonvillei subsp. dassonvillei (DSM 43111, ATCC 23218, IAM 14287)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11166

Type strain

Culture col. no. DSM 43111 ATCC 23218 IAM 14287 IMET 9605 IMRU 509 21 more

NCBI tax ID(s) 446468 2014 568208

Special Collections DSMZ JCM KCTC CIP Literature strains JMRC

History DSMZ <- IMET <- IMRU (Nocardia dassonvillei) <- P. Thibault, Paris JCM <-- DSM 43111 <-- H. Prauser <-- IMRU 509 <-- P. Thibault. CIP <- 2001, CCM <- IMET <- IMRU <- R. E. Gordon <- P. Thibault

Links

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 is a Gram-positive, rod-shaped bacterium that was isolated from Environment, Soil.

Gram-positive rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265447

MTCC 1411,ATCC 23218,NCTC 10488,DSM 43111,IAM 14287,IMET 9605,JCM 7437,CCM 2713,IFO 14626,NRRL B-5397,VKM Ac-797,AS 4.1231,KCTC 9190,CIP 107115,NBRC 14626,BCRC 16260,CCRC 16260,KACC 20027,UAMH 2954,CGMCC 4.2088,CGMCC 4.1231,VTT E-991431

@ref 20215

Last LPSN update 2026-05-29 08:27:30

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Nocardiopsidaceae

Genus Nocardiopsis

Species Nocardiopsis dassonvillei subsp. dassonvillei

Full scientific name Nocardiopsis dassonvillei subsp. dassonvillei (Brocq-Rousseau 1904) Miyashita et al. 1984 (Approved Lists 1980)

BacDive ID	Other strains from **Nocardiopsis dassonvillei subsp. dassonvillei** (2)	Type strain
128650	N. dassonvillei subsp. dassonvillei STI09649(IMET), Kv13,
128651	N. dassonvillei subsp. dassonvillei STI09583, IMET 9583, Agre 504

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
118857	positive	rod-shaped
125438			90.5
125438	positive		93.116

Multimedia

@ref:	10774
multimedia content:	DSM_43111.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43111.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_43111_1.jpg
multimedia.multimedia content:	EM_DSM_43111_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10774	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
40678	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
10774	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
118857	CIP Medium 57	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
10774	positive	growth	28
10774	positive	growth	30
40678	positive	growth	30
67770	positive	growth	28
118857	positive	growth	25-30
118857	negative	growth	10
118857	negative	growth	37
118857	negative	growth	41
118857	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.259
125439	facultative anaerobe	96.658

Compound production

20216

CompoundGlucose isomerase

Halophily

@ref	Salt	Tested relation	Concentration
118857	NaCl	growth	0 %
118857	NaCl	growth	2 %
118857	NaCl	growth	4 %
118857	NaCl	growth	6 %
118857	NaCl	growth	8 %
118857	NaCl	growth	10 %

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₆), MK-10(H₂), MK-10(H₂), MK-10, MK-10(II,III-H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
118857	17057 ChEBI	cellobiose	-	degradation
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
43413	62968 ChEBI	cellulose	+	hydrolysis
118857	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
118857	17108 ChEBI	D-arabinose	-	degradation
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
118857	15824 ChEBI	D-fructose	-	degradation
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
118857	17634 ChEBI	D-glucose	-	degradation
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
118857	16024 ChEBI	D-mannose	-	degradation
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
118857	65327 ChEBI	D-xylose	-	degradation
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
118857	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
118857	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
118857	17716 ChEBI	lactose	-	degradation
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
118857	17306 ChEBI	maltose	-	degradation
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
118857	17632 ChEBI	nitrate	-	reduction
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
118857	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
118857	17814 ChEBI	salicin	-	degradation
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
118857	17992 ChEBI	sucrose	-	degradation
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118857	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
118857	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
118857	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
118857	17234 ChEBI	glucose		-
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
118857	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
118857	beta-galactosidase	-	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
118857	catalase	+	1.11.1.6
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
118857	gamma-glutamyltransferase	+	2.3.2.2
118857	gelatinase	-
68379	gelatinase	-		from API Coryne
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118857	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118857	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
118857	oxidase	-
118857	phenylalanine ammonia-lyase	-	4.3.1.24
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
118857	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
118857	urease	-	3.5.1.5
68379	urease	-	3.5.1.5	from API Coryne
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	Entner Doudoroff pathway	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	threonine metabolism	100	10 of 10
66794	aspartate and asparagine metabolism	100	9 of 9
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	enterobactin biosynthesis	100	3 of 3
66794	starch degradation	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	aerobactin biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	folate polyglutamylation	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	cellulose degradation	100	5 of 5
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	pyrimidine metabolism	86.67	39 of 45
66794	purine metabolism	86.17	81 of 94
66794	photosynthesis	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	glycolysis	82.35	14 of 17
66794	degradation of sugar acids	80	20 of 25
66794	flavin biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	vitamin B12 metabolism	79.41	27 of 34
66794	alanine metabolism	79.31	23 of 29
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	NAD metabolism	77.78	14 of 18
66794	allantoin degradation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	histidine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	arginine metabolism	75	18 of 24
66794	cyclohexanol degradation	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	tryptophan metabolism	73.68	28 of 38
66794	isoprenoid biosynthesis	73.08	19 of 26
66794	methionine metabolism	73.08	19 of 26
66794	proline metabolism	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	d-xylose degradation	72.73	8 of 11
66794	degradation of hexoses	72.22	13 of 18
66794	propanol degradation	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	oxidative phosphorylation	71.43	65 of 91
66794	non-pathway related	71.05	27 of 38
66794	myo-inositol biosynthesis	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	degradation of pentoses	67.86	19 of 28
66794	sulfoquinovose degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glutathione metabolism	64.29	9 of 14
66794	tyrosine metabolism	64.29	9 of 14
66794	ascorbate metabolism	63.64	14 of 22
66794	metabolism of disaccharids	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	carnitine metabolism	62.5	5 of 8
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	aclacinomycin biosynthesis	57.14	4 of 7
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	phenol degradation	55	11 of 20
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	lactate fermentation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	androgen and estrogen metabolism	50	8 of 16
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	CMP-KDO biosynthesis	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	carotenoid biosynthesis	45.45	10 of 22
66794	lipid A biosynthesis	44.44	4 of 9
66794	daunorubicin biosynthesis	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	hydrogen production	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	chlorophyll metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	coenzyme M biosynthesis	30	3 of 10
66794	cholesterol biosynthesis	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
118857	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
10774	-	-	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118857	-	+	+	-	-	+	-	-	-	+	-	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118857	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118857	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	-	-	+	+	+	-	+	+	-	-	+	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	+	-	-	+	+	+	+	+	-	-	+	-	-	-	+	-	+	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	-	+	-	-	+	+	+	-	+	+

Isolation, sampling and environmental information

Isolation

118857

Sample typeEnvironment, Soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10774	2	Risk group (German classification) According to TRBA 466
118857	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM9298v1 assembly for Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111	complete	GCA_000092985	446468.6	646564557	446468	99.26
66792	56553_A01 assembly for Nocardiopsis dassonvillei NCTC10488	complete	GCA_900638215	2014.5	8046265868	2014	99.04
67770	ASM1239634v1 assembly for Nocardiopsis dassonvillei ATCC 23218	contig	GCA_012396345	2014.8	8115128942	2014	35.61

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	N.dassonvillei 16S rRNA gene	X97886	1461	446468
67770	Nocardiopsis dassonvillei gene for 16S ribosomal RNA, partial sequence	D85492	1483	2014
124043	Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111(T) 16S ribosomal RNA gene, partial sequence.	MN686689	468	568208
124043	Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111(T) 16S ribosomal RNA gene, partial sequence.	MN686653	549	568208
124043	Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111(T) 16S ribosomal RNA gene, partial sequence.	MN687834	515	568208
124043	Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111(T) 16S ribosomal RNA gene, partial sequence.	MN686666	525	568208
124043	Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111(T) 16S ribosomal RNA gene, partial sequence.	MN688239	544	568208
124043	Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111(T) 16S ribosomal RNA gene, partial sequence.	MN686612	515	568208

GC content

@ref	GC-content (mol%)	Method
67770	69	thermal denaturation, midpoint method (Tm)
67770	72.73	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM9298v1 assembly for Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
BV-BRC: 446468.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.66	no
125439	gram_stain	BacteriaNetⓘ	positive	85.14	no
125439	spore_formation	BacteriaNetⓘ	yes	70.22	no
125439	motility	BacteriaNetⓘ	no	85.76	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 DSM 43111
NCBI: GCA_000092985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.12	no
125438	anaerobic	anaerobicⓘ	no	97.83	no
125438	aerobic	aerobicⓘ	yes	92.26	no
125438	spore-forming	spore-formingⓘ	yes	86.59	no
125438	thermophilic	thermophileⓘ	no	93.71	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Insights into the biodegradation of polyhydroxyalkanoates by the tropical marine isolate, Nocardiopsis dassonvillei NCIM 5124.	Anjulal H, Singhvi M, Zinjarde S.	3 Biotech	10.1007/s13205-024-04079-3	2024
Phylogeny	Isolation, Screening and Identification of Biosurfactant Producing Strain Nocardiopsis dassonvillei var B2 From Oil Contaminated Soil.	Panatula N, Guntuku G, Palla MS, Muthyala MKK, Meka M, Jagadeeswara Reddy D.	J Basic Microbiol	10.1002/jobm.202400504	2024
Enzymology	Expression in Pichia pastoris of Thermostable Endo-1,4-beta-xylanase from the Actinobacterium Nocardiopsis halotolerans: Properties and Use for Saccharification of Xylan-Containing Products.	Lisov AV, Belova OV, Belov AA, Lisova ZA, Nagel AS, Shadrin AM, Andreeva-Kovalevskaya ZI, Nagornykh MO, Zakharova MV, Leontievsky AA.	Int J Mol Sci	10.3390/ijms25169121	2024
Phylogeny	Fatal pulmonary infection related to Nocardiopsis dassonvillei in a patient with chronic obstructive pulmonary disease.	Scussel R, Lotte R, Gillon J, Chassang M, Boudoumi D, Ruimy R.	New Microbes New Infect	10.1016/j.nmni.2020.100654	2020
	A Mini-Review of Anti-Listerial Compounds from Marine Actinobacteria (1990-2023).	Ngema SS, Madoroba E.	Antibiotics (Basel)	10.3390/antibiotics13040362	2024
	Role of fourteen XRE-DUF397 pairs from Streptomyces coelicolor as regulators of antibiotic production and differentiation. New players in a complex regulatory network.	Riascos C, Martinez-Carrasco A, Diaz M, Santamaria RI.	Front Microbiol	10.3389/fmicb.2023.1217350	2023
	New Insights on Biological Activities, Chemical Compositions, and Classifications of Marine Actinomycetes Antifouling Agents.	Morgan RN, Ali AA, Alshahrani MY, Alshahrani MY, Alshahrani MY, Aboshanab KM.	Microorganisms	10.3390/microorganisms11102444	2023
	An Isotopic Ratio Outlier Analysis Approach for Global Metabolomics of Biosynthetically Talented Actinomycetes.	Carey J, Nguyen T, Korchak J, Beecher C, de Jong F, Lane AL.	Metabolites	10.3390/metabo9090181	2019
Genetics	Mining of Microbial Genomes for the Novel Sources of Nitrilases.	Sharma N, Thakur N, Raj T, Savitri, Bhalla TC.	Biomed Res Int	10.1155/2017/7039245	2017
Metabolism	In vivo characterization of the activities of novel cyclodipeptide oxidases: new tools for increasing chemical diversity of bioproduced 2,5-diketopiperazines in Escherichia coli.	Le Chevalier F, Correia I, Matheron L, Babin M, Moutiez M, Canu N, Gondry M, Lequin O, Belin P.	Microb Cell Fact	10.1186/s12934-020-01432-y	2020
	Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277^T), Which Produces Serine Protease.	Tokovenko B, Ruckert C, Kalinowski J, Mohammadipanah F, Wink J, Rosenkranzer B, Myronovskyi M, Luzhetskyy A.	Genome Announc	10.1128/genomea.00362-17	2017
	Molecular Characterization of Plasmids Harbored by Actinomycetes Isolated From the Great Salt Plains of Oklahoma Using PFGE and Next Generation Whole Genome Sequencing.	Cornell CR, Marasini D, Marasini D, Fakhr MK.	Front Microbiol	10.3389/fmicb.2018.02282	2018
Phylogeny	Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees.	Qiao J, Chen L, Li Y, Wang J, Zhang W, Chen S.	J Bacteriol	10.1128/jb.01522-12	2012
	Next generation sequencing data of a defined microbial mock community.	Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T.	Sci Data	10.1038/sdata.2016.81	2016
	Isolation and characterization of the gene cluster for biosynthesis of the thiopeptide antibiotic TP-1161.	Engelhardt K, Degnes KF, Zotchev SB.	Appl Environ Microbiol	10.1128/aem.01442-10	2010
	Antibiofilm activity of biosynthesized silver and copper nanoparticles using Streptomyces S29.	Elshaer S, Shaaban MI.	AMB Express	10.1186/s13568-023-01647-3	2023
Proteome	The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and physics of nucleic acids and proteins.	Goncearenco A, Berezovsky IN.	Biol Direct	10.1186/s13062-014-0029-2	2014
Metabolism	Genes associated with 2-methylisoborneol biosynthesis in cyanobacteria: isolation, characterization, and expression in response to light.	Wang Z, Xu Y, Shao J, Wang J, Li R.	PLoS One	10.1371/journal.pone.0018665	2011
Metabolism	Natural Product Potential of the Genus Nocardiopsis.	Ibrahim AH, Desoukey SY, Fouad MA, Kamel MS, Gulder TAM, Abdelmohsen UR.	Mar Drugs	10.3390/md16050147	2018
	LightCUD: a program for diagnosing IBD based on human gut microbiome data.	Xu C, Zhou M, Xie Z, Li M, Zhu X, Zhu H.	BioData Min	10.1186/s13040-021-00241-2	2021
Enzymology	Genome-guided Investigation of Antibiotic Substances produced by Allosalinactinospora lopnorensis CA15-2(T) from Lop Nor region, China.	Huang C, Leung RK, Guo M, Tuo L, Guo L, Yew WW, Lou I, Lee SMY, Sun C.	Sci Rep	10.1038/srep20667	2016
	The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu.	Das D, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Yeh A, Zhou J, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.	Protein Sci	10.1002/pro.497	2010
Genetics	Comparative genomic analysis of the genus Nocardiopsis provides new insights into its genetic mechanisms of environmental adaptability.	Li HW, Zhi XY, Yao JC, Zhou Y, Tang SK, Klenk HP, Zhao J, Li WJ.	PLoS One	10.1371/journal.pone.0061528	2013
Metabolism	Genomics of aerobic cellulose utilization systems in actinobacteria.	Anderson I, Abt B, Lykidis A, Klenk HP, Kyrpides N, Ivanova N.	PLoS One	10.1371/journal.pone.0039331	2012
	Gene expression profiling gut microbiota in different races of humans.	Chen L, Zhang YH, Huang T, Cai YD.	Sci Rep	10.1038/srep23075	2016
Metabolism	Comparative studies on similarities and differences of cyclodipeptide oxidases for installation of C-C double bonds at the diketopiperazine ring.	Mikulski L, Schafer J, Brockmeyer K, Kraut R, Li SM.	Appl Microbiol Biotechnol	10.1007/s00253-020-10392-7	2020
Transcriptome	In silico analysis highlights the frequency and diversity of type 1 lantibiotic gene clusters in genome sequenced bacteria.	Marsh AJ, O'Sullivan O, Ross RP, Cotter PD, Hill C.	BMC Genomics	10.1186/1471-2164-11-679	2010
	In silico characterization of pectate lyase protein sequences from different source organisms.	Dubey AK, Yadav S, Kumar M, Singh VK, Sarangi BK, Yadav D.	Enzyme Res	10.4061/2010/950230	2010
Pathogenicity	Effect of sulfonylurea tribenuron methyl herbicide on soil Actinobacteria growth and characterization of resistant strains.	Rachedi K, Zermane F, Tir R, Ayache F, Duran R, Lauga B, Karama S, Simon M, Boulahrouf A.	Braz J Microbiol	10.1016/j.bjm.2017.05.004	2018
Metabolism	Discovery of nuclear-encoded genes for the neurotoxin saxitoxin in dinoflagellates.	Stuken A, Orr RJ, Kellmann R, Murray SA, Neilan BA, Jakobsen KS.	PLoS One	10.1371/journal.pone.0020096	2011
Genetics	Inteins as indicators of gene flow in the halobacteria.	Soucy SM, Fullmer MS, Papke RT, Gogarten JP.	Front Microbiol	10.3389/fmicb.2014.00299	2014
Enzymology	PKMiner: a database for exploring type II polyketide synthases.	Kim J, Yi GS.	BMC Microbiol	10.1186/1471-2180-12-169	2012
Genetics	Developmental biology of Streptomyces from the perspective of 100 actinobacterial genome sequences.	Chandra G, Chater KF.	FEMS Microbiol Rev	10.1111/1574-6976.12047	2014
Metabolism	Biosynthesis of a new UDP-sugar, UDP-2-acetamido-2-deoxyxylose, in the human pathogen Bacillus cereus subspecies cytotoxis NVH 391-98.	Gu X, Glushka J, Lee SG, Bar-Peled M.	J Biol Chem	10.1074/jbc.m110.125872	2010
Metabolism	Cloning and analysis of the planosporicin lantibiotic biosynthetic gene cluster of Planomonospora alba.	Sherwood EJ, Hesketh AR, Bibb MJ.	J Bacteriol	10.1128/jb.02291-12	2013
Enzymology	Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme.	Carretero-Paulet L, Lipska A, Perez-Gil J, Sangari FJ, Albert VA, Rodriguez-Concepcion M.	BMC Evol Biol	10.1186/1471-2148-13-180	2013
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Metabolism	Diversity and evolution of the phenazine biosynthesis pathway.	Mavrodi DV, Peever TL, Mavrodi OV, Parejko JA, Raaijmakers JM, Lemanceau P, Mazurier S, Heide L, Blankenfeldt W, Weller DM, Thomashow LS.	Appl Environ Microbiol	10.1128/aem.02009-09	2010
Phylogeny	Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.	Gao B, Gupta RS.	Microbiol Mol Biol Rev	10.1128/mmbr.05011-11	2012
	Classifying nitrilases as aliphatic and aromatic using machine learning technique.	Sharma N, Verma R, Savitri, Bhalla TC.	3 Biotech	10.1007/s13205-018-1102-9	2018
	Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum.	Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R.	Int J Bacteriol	10.1155/2013/168742	2013
Enzymology	Use of the BioMerieux ID 32C yeast identification system for identification of aerobic actinomycetes of medical importance.	Muir DB, Pritchard RC.	J Clin Microbiol	10.1128/jcm.35.12.3240-3243.1997	1997
	Surfactants tailored by the class Actinobacteria.	Kugler JH, Le Roes-Hill M, Syldatk C, Hausmann R.	Front Microbiol	10.3389/fmicb.2015.00212	2015
Phylogeny	Isolation and identification of endophytic actinobacteria from Citrullus colocynthis (L.) Schrad and their antibacterial properties.	Ali AR, Bahrami Y, Kakaei E, Mohammadzadeh S, Bouk S, Jalilian N.	Microb Cell Fact	10.1186/s12934-022-01936-9	2022
Phylogeny	Characterization of Silver Carbonate Nanoparticles Biosynthesized Using Marine Actinobacteria and Exploring of Their Antimicrobial and Antibiofilm Activity.	Messaoudi O, Benamar I, Azizi A, Albukhaty S, Khane Y, Sulaiman GM, Salem-Bekhit MM, Hamdi K, Ghoummid S, Zoukel A, Messahli I, Kerchich Y, Benaceur F, Salem MM, Bendahou M.	Mar Drugs	10.3390/md21100536	2023
	An airborne actinobacteria Nocardiopsis alba isolated from bioaerosol of a mushroom compost facility.	Pasciak M, Pawlik K, Gamian A, Szponar B, Skora J, Gutarowska B.	Aerobiologia (Bologna)	10.1007/s10453-014-9336-4	2014
	Overexpression, biochemical characterization, and structural modeling of polyhydroxybutyrate depolymerase from Nocardiopsis dassonvillei.	Anjulal H, Saha A, Barvkar VT, Pawar K, Joshi M, Zinjarde SS.	Enzyme Microb Technol	10.1016/j.enzmictec.2025.110767	2026
	Coexpression of the Ectoine Biosynthetic Gene Cluster from Nocardiopsis dassonvillei NCIM 5124 in Escherichia coli by Using a Novel Strategy.	Kadam PM, Barvkar VT, Patil SS, Ahirrao SB, Zinjarde SS.	Curr Microbiol	10.1007/s00284-025-04498-2	2025
Transcriptome	The tropical marine actinomycete Nocardiopsis dassonvillei NCIM 5124 as novel source of ectoine: Genomic and transcriptomic insights.	Kadam P, Barvkar VT, Darshetkar AM, Zinjarde S.	Gene	10.1016/j.gene.2024.148860	2024
Enzymology	Comprehensive updates on the biological features and metabolic potential of the versatile extremophilic actinomycete Nocardiopsis dassonvillei.	Bhairamkar S, Kadam P, Anjulal H, Joshi A, Chaudhari R, Bagul D, Javdekar V, Zinjarde S.	Res Microbiol	10.1016/j.resmic.2023.104171	2024
	Whole genome sequencing and functional analysis of a novel biofilm-eradicating strain Nocardiopsis lucentensis EMB25	Goel N, Zaidi S, Khare SK.	World J Microbiol Biotechnol.		2023
Genetics	Bioactivity of bacteria associated with Red Sea nudibranchs and whole genome sequence of Nocardiopsis dassonvillei RACA-4.	Elfeky HH, Hanora A, Solyman SM.	Mar Genomics	10.1016/j.margen.2022.101004	2023
Genetics	Whole genome sequencing and functional analysis of a novel biofilm-eradicating strain Nocardiopsis lucentensis EMB25.	Goel N, Zaidi S, Khare SK.	World J Microbiol Biotechnol	10.1007/s11274-023-03738-6	2023
	Cytotoxic phenazine and antiallergic phenoxazine alkaloids from an arctic Nocardiopsis dassonvillei SCSIO 502F.	Song Y, Li QY, Cong MJ, Pang XY, Chen B, Liu YH, Liao L, Wang JF.	Nat Prod Bioprospect	10.1007/s13659-023-00408-w	2023
	Evaluation of Antimicrobial Activity by Marine Nocardiopsis dassonvillei against Foodborne Listeria monocytogenes and Shiga Toxin-Producing Escherichia coli.	Ngema SS, Khumalo SH, Ojo MC, Pooe OJ, Malilehe TS, Basson AK, Madoroba E.	Microorganisms	10.3390/microorganisms11102539	2023
	Antibacterial angucyclinone and alpha-pyrone derivatives from desert-derived Nocardiopsis dassonvillei HDN 154151.	Tang Z, Chang Y, Zhu T, Che Q, Li D, Zhang G.	J Antibiot (Tokyo)	10.1038/s41429-022-00526-6	2022
	Effective removal of heavy metals in industrial wastewater with novel bioactive catalyst enabling hybrid approach.	Rajivgandhi G, Gnanamangai BM, Ramachandran G, Chackaravarthy G, Chelliah CK, Maruthupandy M, Alharbi NS, Kadaikunnan S, Li WJ.	Environ Res	10.1016/j.envres.2021.112337	2022
Enzymology	Broad substrate scope C-C oxidation in cyclodipeptides catalysed by a flavin-dependent filament.	Sutherland E, Harding CJ, du Monceau de Bergendal T, Florence GJ, Ackermann K, Bode BE, Synowsky S, Sundaramoorthy R, Czekster CM.	Nat Commun	10.1038/s41467-025-56127-y	2025
	Bacillus cereus is a key microbial determinant of intractable otitis media with effusion.	Fan Y, Chen J, Xu S, Zhou H, Shang Y, Tian X, Wang B, Zhao Y, Shan G, Zhao Y, Zhang P, Chen X.	Commun Med (Lond)	10.1038/s43856-025-00876-w	2025
	Exogenous production of cold-active cellulase from polar Nocardiopsis sp. with increased cellulose hydrolysis efficiency.	Sivasankar P, Poongodi S, Sivakumar K, Al-Qahtani WH, Arokiyaraj S, Jothiramalingam R.	Arch Microbiol	10.1007/s00203-022-02830-z	2022
	Dassonmycins A and B, Polycyclic Thioalkaloids from a Marine Sponge-Derived Nocardiopsis dassonvillei SCSIO 40065.	Zhang X, Chen S, Zhang L, Zhang Q, Zhang W, Chen Y, Zhang W, Zhang H, Zhang C.	Org Lett	10.1021/acs.orglett.1c00328	2021
	Antimicrobial potential of actinomycetes from high altitude Nepalese soils.	Aryal S, Adhikari R, Regmi B, Joshi DR.	Sci Rep	10.1038/s41598-025-09357-5	2025
Phylogeny	Detection of anaerobic and aerobic bacteria from commercial tattoo and permanent makeup inks.	Yoon S, Kondakala S, Foley SL, Moon MS, Huang M-CJ, Periz G, Zang J, Katz LM, Kim S-J, Kweon O.	Appl Environ Microbiol	10.1128/aem.00276-24	2024
	Biochemical, thermodynamic and structural characteristics of a biotechnologically compatible alkaline protease from a haloalkaliphilic, Nocardiopsis dassonvillei OK-18.	Sharma AK, Kikani BA, Singh SP.	Int J Biol Macromol	10.1016/j.ijbiomac.2020.03.006	2020
Pathogenicity	Gold nanoparticles biosynthesized by Nocardiopsis dassonvillei NCIM 5124 enhance osteogenesis in gingival mesenchymal stem cells.	Bennur T, Javdekar V, Tomar GB, Zinjarde S.	Appl Microbiol Biotechnol	10.1007/s00253-020-10508-z	2020
	Genetic and Phenotypic Heterogeneity of the Nocardiopsis alba Strains of Seawater.	Rathore DS, Sheikh MA, Gohel SD, Singh SP.	Curr Microbiol	10.1007/s00284-021-02420-0	2021
	Biosynthesis of Silver Nanoparticles by Marine Actinobacterium Nocardiopsis dassonvillei and Exploring Their Therapeutic Potentials.	Khalil MA, El-Shanshoury AER, Alghamdi MA, Alsalmi FA, Mohamed SF, Sun J, Ali SS.	Front Microbiol	10.3389/fmicb.2021.705673	2021
	Novel marine Nocardiopsis dassonvillei-DS013 mediated silver nanoparticles characterization and its bactericidal potential against clinical isolates.	Dhanaraj S, Thirunavukkarasu S, Allen John H, Pandian S, Salmen SH, Chinnathambi A, Alharbi SA.	Saudi J Biol Sci	10.1016/j.sjbs.2020.01.003	2020
	Expanding the beta-Lactamase Family in the Human Microbiome.	Jia B, Baek JH, Lee JK, Sun Y, Kim KH, Jung JY, Jeon CO.	Adv Sci (Weinh)	10.1002/advs.202403563	2024
Phylogeny	Molecular identification and antibiotic resistance pattern of actinomycetes isolates among immunocompromised patients in Iran, emerging of new infections.	Rahdar HA, Mahmoudi S, Bahador A, Ghiasvand F, Sadeghpour Heravi F, Feizabadi MM.	Sci Rep	10.1038/s41598-021-90269-5	2021
	Isolation, characterization and screening of actinomycetes associated with fijian ant-plant symbioses.	Diarra U, Osborne-Naikatini T.	Microbiology (Reading)	10.1099/mic.0.001410	2023
Metabolism	Purification and characterization of a new thermophilic collagenase from Nocardiopsis dassonvillei NRC2aza and its application in wound healing.	Abood A, Salman AMM, Abdelfattah AM, El-Hakim AE, Abdel-Aty AM, Hashem AM.	Int J Biol Macromol	10.1016/j.ijbiomac.2018.05.030	2018
	Melanin pigments from sediment-associated Nocardiopsis sp. marine actinobacterium and antibacterial potential.	Sundar R, Sivaperumal P.	J Adv Pharm Technol Res	10.4103/japtr.japtr_339_22	2022
	Rhizospheric-Derived Nocardiopsis alba BH35 as an Effective Biocontrol Agent Actinobacterium with Antifungal and Plant Growth-Promoting Effects: In Vitro Studies.	El-Sayed MH, Kobisi AEA, Elsehemy IA, El-Sakhawy MA.	J Microbiol Biotechnol	10.4014/jmb.2301.01001	2023
Pathogenicity	Characterisation and identification of antibacterial compound from marine actinobacteria: In vitro and in silico analysis.	Priyanka S, Jayashree M, Shivani R, Anwesha S, Bhaskara Rao KV, I AE.	J Infect Public Health	10.1016/j.jiph.2018.09.005	2019
	Improving protein hydrolysis and digestibility in Arthrospira platensis biomass through recombinant peptidases (EC 3.4): Opportunities for monogastric animal diets.	Spinola MP, Costa MM, Simoes RS, Fernandes VO, Cardoso V, Pires VMR, Afonso C, Cardoso C, Bandarra NM, Fontes CMGA, Prates JAM.	Heliyon	10.1016/j.heliyon.2024.e41460	2025
	Synergistic Plant-Microbe Interactions between Endophytic Actinobacteria and Their Role in Plant Growth Promotion and Biological Control of Cotton under Salt Stress.	Mohamad OAA, Liu YH, Li L, Ma JB, Huang Y, Gao L, Fang BZ, Wang S, El-Baz AF, Jiang HC, Li WJ.	Microorganisms	10.3390/microorganisms10050867	2022
	Bacterial synthesis of anisotropic gold nanoparticles.	Ahmady IM, Parambath JBM, Elsheikh EAE, Kim G, Han C, Perez-Garcia A, Mohamed AA.	Appl Microbiol Biotechnol	10.1007/s00253-025-13438-w	2025
Phylogeny	Isolation and screening of Thermoactinomycetaceae family members as an extremophilic poor investigated and promising natural source of antimicrobial substances.	Seyed Shirazi SR, Hamedi J.	Iran J Microbiol	10.18502/ijm.v15i1.11920	2023
	Evaluating the Antagonistic Potential of Actinomycete Strains Isolated From Sudan's Soils Against Phytophthora infestans.	Abdelrahman O, Yagi S, El Siddig M, El Hussein A, Germanier F, De Vrieze M, L'Haridon F, Weisskopf L.	Front Microbiol	10.3389/fmicb.2022.827824	2022
Biotechnology	Coproduction of alkaline protease and xylanase from genetically modified Indonesian local Bacillus halodurans CM1 using corncob as an inducing substrate.	Putra IGEP, Ulfah M, Nurhayati N, Helianti I.	Saudi J Biol Sci	10.1016/j.sjbs.2024.103947	2024
	Effect of amino acids on the repression of alkaline protease synthesis in haloalkaliphilic Nocardiopsis dassonvillei.	Sharma AK, Singh SP.	Biotechnol Rep (Amst)	10.1016/j.btre.2016.10.004	2016
Genetics	Metapresence: a tool for accurate species detection in metagenomics based on the genome-wide distribution of mapping reads.	Sanguineti D, Zampieri G, Treu L, Campanaro S.	mSystems	10.1128/msystems.00213-24	2024
Transcriptome	Transcriptome-Wide Identification and Expression Analysis of Genes Encoding Defense-Related Peptides of Filipendula ulmaria in Response to Bipolaris sorokiniana Infection.	Istomina EA, Korostyleva TV, Kovtun AS, Slezina MP, Odintsova TI.	J Fungi (Basel)	10.3390/jof10040258	2024
Enzymology	Nasal vestibulitis due to Nocardiopsis dassonvillei in a diabetic patient.	Shivaprakash MR, Sumangala B, Prasanna H, Yenigalla BM, Munegowda KC, Ravi D, Chakrabarti A.	J Med Microbiol	10.1099/jmm.0.038240-0	2012
	Biodecolorization and Biodegradation of Azo Dye Reactive Orange-16 by Marine Nocardiopsis sp.	Chittal V, Gracias M, Anu A, Saha P, Bhaskara Rao KV.	Iran J Biotechnol	10.29252/ijb.1551	2019
	The Metabolic Potential of Endophytic Actinobacteria Associated with Medicinal Plant Thymus roseus as a Plant-Growth Stimulator.	Mohamad OAA, Liu YH, Huang Y, Li L, Ma JB, Egamberdieva D, Gao L, Fang BZ, Hatab S, Jiang HC, Li WJ.	Microorganisms	10.3390/microorganisms10091802	2022
	Antagonistic Strain Bacillus amyloliquefaciens XZ34-1 for Controlling Bipolaris sorokiniana and Promoting Growth in Wheat.	Yi Y, Shan Y, Liu S, Yang Y, Liu Y, Yin Y, Hou Z, Luan P, Li R.	Pathogens	10.3390/pathogens10111526	2021
	Composition of nutrient media and temperature of cultivation imposes effect on the content of secondary metabolites of Nocardiopsis sp. isolated from a Siberian Cave.	Axenov-Gribanov DV, Morgunova MM, Vasilieva UA, Gamaiunov SV, Dmitrieva Krasnova ME, Pereliaeva EV, Belyshenko AY, Luzhetskyy AN.	3 Biotech	10.1007/s13205-021-02926-1	2021
Genetics	Karakum desert: a unique source of cultivable novel and rare actinomycetes with a remarkable biosynthetic potential.	Saygin H, Sahin N, Goodfellow M.	World J Microbiol Biotechnol	10.1007/s11274-025-04399-3	2025
	The effects of antibiotics and illness on gut microbial composition in the fawn-footed mosaic-tailed rat (Melomys cervinipes).	Rymer TL, Pillay N.	PLoS One	10.1371/journal.pone.0281533	2023
	Screening and Identification of a Streptomyces Strain with Quorum-Sensing Inhibitory Activity and Effect of the Crude Extracts on Virulence Factors of Pseudomonas aeruginosa.	Zhang Z, Sun Y, Yi Y, Bai X, Zhu L, Zhu J, Gu M, Zhu Y, Jiang L.	Microorganisms	10.3390/microorganisms11082079	2023
Metabolism	Insights into the generation of structural diversity in a tRNA-dependent pathway for highly modified bioactive cyclic dipeptides.	Giessen TW, von Tesmar AM, Marahiel MA.	Chem Biol	10.1016/j.chembiol.2013.04.017	2013
Pathogenicity	Antimicrobial compounds from marine actinomycetes.	Wang C, Lu Y, Cao S.	Arch Pharm Res	10.1007/s12272-020-01251-0	2020
Genetics	Qmatey: an automated pipeline for fast exact matching-based alignment and strain-level taxonomic binning and profiling of metagenomes.	Adams AK, Kristy BD, Gorman M, Balint-Kurti P, Yencho GC, Olukolu BA.	Brief Bioinform	10.1093/bib/bbad351	2023
	Diversity and Biocontrol Potential of Cultivable Endophytic Bacteria Associated with Halophytes from the West Aral Sea Basin.	Gao L, Ma J, Liu Y, Huang Y, Mohamad OAA, Jiang H, Egamberdieva D, Li W, Li L.	Microorganisms	10.3390/microorganisms9071448	2021
Enzymology	Purification and characterization of a thermostable xylanase from Saccharopolyspora pathumthaniensis S582 isolated from the gut of a termite.	Sinma K, Khucharoenphaisan K, Kitpreechavanich V, Tokuyama S.	Biosci Biotechnol Biochem	10.1271/bbb.110353	2011
	Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis.	Gautam A, Felderhoff H, Bagci C, Huson DH.	mSystems	10.1128/msystems.01408-21	2022
	Synergistic Impacts of Plant-Growth-Promoting Bacteria and Selenium Nanoparticles on Improving the Nutritional Value and Biological Activities of Three Cultivars of Brassica Sprouts.	AbdElgawad H, Magdy Korany S, Reyad AM, Zahid I, Akhter N, Alsherif E, Sheteiwy MS, Shah AA, Selim S, Hassan AHA, Yaghoubi Khanghahi M, Beemster GTS, Crecchio C.	ACS Omega	10.1021/acsomega.3c02957	2023
	Immunochemical studies of trehalose-containing major glycolipid from Tsukamurella pulmonis.	Pasciak M, Kaczynski Z, Lindner B, Holst O, Gamian A.	Carbohydr Res	10.1016/j.carres.2010.04.026	2010
Metabolism	Biosynthesis and metabolic engineering of 1-hydroxyphenazine in Pseudomonas chlororaphis H18.	Wan Y, Liu H, Xian M, Huang W.	Microb Cell Fact	10.1186/s12934-021-01731-y	2021
Phylogeny	Antimicrobial activity of bacteria isolated from Red Sea marine invertebrates.	El Samak M, Solyman SM, Hanora A.	Biotechnol Rep (Amst)	10.1016/j.btre.2018.e00275	2018
	Estimation of antimicrobial activities and fatty acid composition of actinobacteria isolated from water surface of underground lakes from Badzheyskaya and Okhotnichya caves in Siberia.	Voytsekhovskaya IV, Axenov-Gribanov DV, Murzina SA, Pekkoeva SN, Protasov ES, Gamaiunov SV, Timofeyev MA.	PeerJ	10.7717/peerj.5832	2018
Metabolism	Phylogenetic diversity and biological activity of actinobacteria isolated from the Chukchi Shelf marine sediments in the Arctic Ocean.	Yuan M, Yu Y, Li HR, Dong N, Zhang XH.	Mar Drugs	10.3390/md12031281	2014
	Overexpression of Bacillus circulans alkaline protease in Bacillus subtilis and its potential application for recovery of protein from soybean dregs.	Chen H, Wu J, Huang X, Feng X, Ji H, Zhao L, Wang J.	Front Microbiol	10.3389/fmicb.2022.968439	2022
Metabolism	A new tetrodotoxin-producing actinomycete, Nocardiopsis dassonvillei, isolated from the ovaries of puffer fish Fugu rubripes.	Wu Z, Xie L, Xia G, Zhang J, Nie Y, Hu J, Wang S, Zhang R.	Toxicon	10.1016/j.toxicon.2005.02.005	2005
Enzymology	Exoproduction and Biochemical Characterization of a Novel Serine Protease from Ornithinibacillus caprae L9^T with Hide-Dehairing Activity.	Li X, Zhang Q, Gan L, Jiang G, Tian Y, Shi B.	J Microbiol Biotechnol	10.4014/jmb.2108.08037	2022
	Isolation and characterization of medically important aerobic actinomycetes in soil of iran (2006 - 2007).	Aghamirian MR, Ghiasian SA.	Open Microbiol J	10.2174/1874285800903010053	2009
Genetics	MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes.	Kumar N, Hitch TCA, Haller D, Lagkouvardos I, Clavel T.	Microb Biotechnol	10.1111/1751-7915.13845	2021
	Inoculation with Actinobacteria spp. Isolated from a Hyper-Arid Environment Enhances Tolerance to Salinity in Lettuce Plants (Lactuca sativa L.).	Gonzalez F, Santander C, Ruiz A, Perez R, Moreira J, Vidal G, Aroca R, Santos C, Cornejo P.	Plants (Basel)	10.3390/plants12102018	2023
	Screening of natural phenazine producers for electroactivity in bioelectrochemical systems.	Franco A, Elbahnasy M, Rosenbaum MA.	Microb Biotechnol	10.1111/1751-7915.14199	2023
Phylogeny	Phylogenetic diversity and activity screening of cultivable Actinobacteria isolated from marine sponges and associated environments from the western coast of India.	Baig U, Dahanukar N, Shintre N, Holkar K, Pund A, Lele U, Gujarathi T, Patel K, Jakati A, Singh R, Vidwans H, Tamhane V, Deshpande N, Watve M.	Access Microbiol	10.1099/acmi.0.000242	2021
	Sequencing introduced false positive rare taxa lead to biased microbial community diversity, assembly, and interaction interpretation in amplicon studies.	Jia Y, Zhao S, Guo W, Peng L, Zhao F, Wang L, Fan G, Zhu Y, Xu D, Liu G, Wang R, Fang X, Zhang H, Kristiansen K, Zhang W, Chen J.	Environ Microbiome	10.1186/s40793-022-00436-y	2022
	iChip-Inspired Isolation, Bioactivities and Dereplication of Actinomycetota from Portuguese Beach Sediments.	Dos Santos JDN, Joao SA, Martin J, Vicente F, Reyes F, Lage OM.	Microorganisms	10.3390/microorganisms10071471	2022
	Bacterial Communities in Alkaline Saline Soils Amended with Young Maize Plants or Its (Hemi)Cellulose Fraction.	Perez-Hernandez V, Hernandez-Guzman M, Luna-Guido M, Navarro-Noya YE, Romero-Tepal EM, Dendooven L.	Microorganisms	10.3390/microorganisms9061297	2021
Pathogenicity	Molecular Identification of Selected Streptomyces Strains Isolated from Mexican Tropical Soils and their Anti-Candida Activity.	Escalante-Rendiz D, de-la-Rosa-Garcia S, Tapia-Tussell R, Martin J, Reyes F, Vicente F, Gamboa-Angulo M.	Int J Environ Res Public Health	10.3390/ijerph16111913	2019
Phylogeny	Diversity and frequency of Nocardia spp. in the soil of Isfahan province, Iran.	Kachuei R, Emami M, Mirnejad R, Khoobdel M.	Asian Pac J Trop Biomed	10.1016/s2221-1691(12)60079-3	2012
Phylogeny	High-resolution phylogenetic microbial community profiling.	Singer E, Bushnell B, Coleman-Derr D, Bowman B, Bowers RM, Levy A, Gies EA, Cheng JF, Copeland A, Klenk HP, Hallam SJ, Hugenholtz P, Tringe SG, Woyke T.	ISME J	10.1038/ismej.2015.249	2016
Phylogeny	Rare, suppurative pulmonary infection caused by Nocardiopsis dassonvillei recognized by glycolipid markers.	Mordarska H, Zakrzewska-Czerwinska J, Pasciak M, Szponar B, Rowinski S.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.1998.tb01148.x	1998
Phylogeny	Microbial Flora Associated with the Halophyte-Salsola imbricate and Its Biotechnical Potential.	Bibi F, Strobel GA, Naseer MI, Yasir M, Khalaf Al-Ghamdi AA, Azhar EI.	Front Microbiol	10.3389/fmicb.2018.00065	2018
	Recent Antimicrobial Responses of Halophilic Microbes in Clinical Pathogens.	Santhaseelan H, Dinakaran VT, Dahms HU, Ahamed JM, Murugaiah SG, Krishnan M, Hwang JS, Rathinam AJ.	Microorganisms	10.3390/microorganisms10020417	2022
	Glycosylated Natural Products From Marine Microbes.	Li K, Cai J, Su Z, Yang B, Liu Y, Zhou X, Huang J, Tao H.	Front Chem	10.3389/fchem.2019.00879	2019
Phylogeny	Phylogenetic affiliation and determination of bioactive compounds of bacterial population associated with organs of mud crab, Scylla olivacea.	Zote J, Passari AK, Zothanpuia, Siddaiah CN, Kumar NS, Abd Allah EF, Hashem A, Alqarawi AA, Malik JA, Singh BP.	Saudi J Biol Sci	10.1016/j.sjbs.2018.08.025	2018
Enzymology	Dust-borne bacteria in animal sheds, schools and children's day care centres.	Andersson AM, Weiss N, Rainey F, Salkinoja-Salonen MS.	J Appl Microbiol	10.1046/j.1365-2672.1999.00706.x	1999
Enzymology	Streptomyces flavogriseus HS1: isolation and characterization of extracellular proteases and their compatibility with laundry detergents.	Ghorbel S, Ghorbel S, Kammoun M, Soltana H, Nasri M, Hmidet N.	Biomed Res Int	10.1155/2014/345980	2014
Phylogeny	The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov.	Rainey FA, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E.	Int J Syst Bacteriol	10.1099/00207713-46-4-1088	1996
	A Short-Term Response of Soil Microbial Communities to Cadmium and Organic Substrate Amendment in Long-Term Contaminated Soil by Toxic Elements.	Madrova P, Vetrovsky T, Omelka M, Grunt M, Smutna Y, Rapoport D, Vach M, Baldrian P, Kopecky J, Sagova-Mareckova M.	Front Microbiol	10.3389/fmicb.2018.02807	2018
Enzymology	[Lytic action of lysoamidase from Xanthomonas sp. correlates with the presence of the target ribitol teichoic acids in the cell wall of gram-positive bacteria].	Kulaev IS, Naumova IB, Streshinskaia GM, Tul'skaia EM, Stepnaia OA, Severin AI, Begunova EA.	Mikrobiologiia		1996
Enzymology	Molecular identification of a Nocardiopsis dassonvillei blood isolate.	Beau F, Bollet C, Coton T, Garnotel E, Drancourt M.	J Clin Microbiol	10.1128/jcm.37.10.3366-3368.1999	1999
	Diversity and Antimicrobial Potential of Cultivable Endophytic Actinobacteria Associated With the Medicinal Plant Thymus roseus.	Musa Z, Ma J, Egamberdieva D, Abdelshafy Mohamad OA, Abaydulla G, Liu Y, Li WJ, Li L.	Front Microbiol	10.3389/fmicb.2020.00191	2020
Enzymology	Purification and characterization of alkaline serine protease from an alkalophilic Streptomyces sp.	Yum DY, Chung HC, Bai DH, Oh DH, Yu JH.	Biosci Biotechnol Biochem	10.1271/bbb.58.470	1994
Genetics	Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis.	Hardwick SA, Chen WY, Wong T, Kanakamedala BS, Deveson IW, Ongley SE, Santini NS, Marcellin E, Smith MA, Nielsen LK, Lovelock CE, Neilan BA, Mercer TR.	Nat Commun	10.1038/s41467-018-05555-0	2018
Biotechnology	Marine cosmetics and the blue bioeconomy: From sourcing to success stories.	Rotter A, Varamogianni-Mamatsi D, Zvonar Pobirk A, Gosenca Matjaz M, Cueto M, Diaz-Marrero AR, Jonsdottir R, Sveinsdottir K, Catala TS, Romano G, Aslanbay Guler B, Atak E, Berden Zrimec M, Bosch D, Deniz I, Gaudencio SP, Grigalionyte-Bembic E, Klun K, Zidar L, Coll Rius A, Baebler S, Lukic Bilela L, Rinkevich B, Mandalakis M.	iScience	10.1016/j.isci.2024.111339	2024
Enzymology	Actinomycetoma caused by Nocardiopsis dassonvillei.	Sindhuphak W, Macdonald E, Head E.	Arch Dermatol	10.1001/archderm.1985.01660100112030	1985
	Accumulation of a bioactive benzoisochromanequinone compound kalafungin by a wild type antitumor-medermycin-producing streptomycete strain.	Lu J, He Q, Huang L, Cai X, Guo W, He J, Zhang L, Li A.	PLoS One	10.1371/journal.pone.0117690	2015
	Immunogenic properties of glycolipids of Nocardiopsis dassonvillei.	Mordarska H, Smogor W, Gamian A.	Arch Immunol Ther Exp (Warsz)		1985
Enzymology	Purification and characterization of two types of alkaline serine proteases produced by an alkalophilic actinomycete.	Tsujibo H, Miyamoto K, Hasegawa T, Inamori Y.	J Appl Bacteriol	10.1111/j.1365-2672.1990.tb01544.x	1990
Metabolism	Microbispora sp. LGMB259 endophytic actinomycete isolated from Vochysia divergens (Pantanal, Brazil) producing beta-carbolines and indoles with biological activity.	Savi DC, Shaaban KA, Vargas N, Ponomareva LV, Possiede YM, Thorson JS, Glienke C, Rohr J.	Curr Microbiol	10.1007/s00284-014-0724-3	2015
	Endophytic Nocardiopsis sp. from Zingiber officinale with both antiphytopathogenic mechanisms and antibiofilm activity against clinical isolates.	Sabu R, Soumya KR, Radhakrishnan EK.	3 Biotech	10.1007/s13205-017-0735-4	2017
Pathogenicity	TAN-999 and TAN-1030A, new indolocarbazole alkaloids with macrophage-activating properties.	Tanida S, Takizawa M, Takahashi T, Tsubotani S, Harada S.	J Antibiot (Tokyo)	10.7164/antibiotics.42.1619	1989
Genetics	Comparative genomics reveals evidence of marine adaptation in Salinispora species.	Penn K, Jensen PR.	BMC Genomics	10.1186/1471-2164-13-86	2012
	Global burden of human mycetoma: a systematic review and meta-analysis.	van de Sande WW.	PLoS Negl Trop Dis	10.1371/journal.pntd.0002550	2013
Phylogeny	Molecular-genetic and chemotaxonomic studies on Actinomadura and Nocardiopsis.	Fischer A, Kroppenstedt RM, Stackebrandt E.	J Gen Microbiol	10.1099/00221287-129-11-3433	1983
Enzymology	Sugar-containing lipids in the classification of representative Actinomadura and Nocardiopsis species.	Mordarska H, Gamian A, Carrasco J.	Arch Immunol Ther Exp (Warsz)		1983
	Aquatic model for engine oil degradation by rhamnolipid producing Nocardiopsis VITSISB.	Roy S, Chandni S, Das I, Karthik L, Kumar G, Bhaskara Rao KV.	3 Biotech	10.1007/s13205-014-0199-8	2015
Metabolism	Beta-1,3-glucanase from Delftia tsuruhatensis strain MV01 and its potential application in vinification.	Blattel V, Larisika M, Pfeiffer P, Nowak C, Eich A, Eckelt J, Konig H.	Appl Environ Microbiol	10.1128/aem.01943-10	2011
Enzymology	Survey of human pathogenic actinomycetes and fungi in soil from Rome and other Italian areas.	Polonelli L, Morace G, Barcaioli BM, Cossu AL.	Mycopathologia	10.1007/bf00575087	1981
Phylogeny	Numerical classification of Streptomyces and related genera.	Williams ST, Goodfellow M, Alderson G, Wellington EM, Sneath PH, Sackin MJ.	J Gen Microbiol	10.1099/00221287-129-6-1743	1983
Metabolism	A bacterial source for mollusk pyrone polyketides.	Lin Z, Torres JP, Ammon MA, Marett L, Teichert RW, Reilly CA, Kwan JC, Hughen RW, Flores M, Tianero MD, Peraud O, Cox JE, Light AR, Villaraza AJ, Haygood MG, Concepcion GP, Olivera BM, Schmidt EW.	Chem Biol	10.1016/j.chembiol.2012.10.019	2013
Metabolism	Specificity determinants for the two tRNA substrates of the cyclodipeptide synthase AlbC from Streptomyces noursei.	Moutiez M, Seguin J, Fonvielle M, Belin P, Jacques IB, Favry E, Arthur M, Gondry M.	Nucleic Acids Res	10.1093/nar/gku348	2014
Transcriptome	MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.	Huson DH, Albrecht B, Bagci C, Bessarab I, Gorska A, Jolic D, Williams RBH.	Biol Direct	10.1186/s13062-018-0208-7	2018
Metabolism	The DyP-type peroxidase DtpA is a Tat-substrate required for GlxA maturation and morphogenesis in Streptomyces.	Petrus ML, Vijgenboom E, Chaplin AK, Worrall JA, van Wezel GP, Claessen D.	Open Biol	10.1098/rsob.150149	2016
Metabolism	Novel extracellular PHB depolymerase from Streptomyces ascomycinicus: PHB copolymers degradation in acidic conditions.	Garcia-Hidalgo J, Hormigo D, Arroyo M, de la Mata I.	PLoS One	10.1371/journal.pone.0071699	2013
Metabolism	Microbisporicin gene cluster reveals unusual features of lantibiotic biosynthesis in actinomycetes.	Foulston LC, Bibb MJ.	Proc Natl Acad Sci U S A	10.1073/pnas.1008285107	2010
Phylogeny	Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.	Earl JP, Adappa ND, Krol J, Bhat AS, Balashov S, Ehrlich RL, Palmer JN, Workman AD, Blasetti M, Sen B, Hammond J, Cohen NA, Ehrlich GD, Mell JC.	Microbiome	10.1186/s40168-018-0569-2	2018
Enzymology	C/N ratio drives soil actinobacterial cellobiohydrolase gene diversity.	de Menezes AB, Prendergast-Miller MT, Poonpatana P, Farrell M, Bissett A, Macdonald LM, Toscas P, Richardson AE, Thrall PH.	Appl Environ Microbiol	10.1128/aem.00067-15	2015
Enzymology	Functional characterization of Corynebacterium glutamicum mycothiol S-conjugate amidase.	Si M, Long M, Chaudhry MT, Xu Y, Zhang P, Zhang L, Shen X.	PLoS One	10.1371/journal.pone.0115075	2014
Enzymology	Chitinase genes in lake sediments of Ardley Island, Antarctica.	Xiao X, Yin X, Lin J, Sun L, You Z, Wang P, Wang F.	Appl Environ Microbiol	10.1128/aem.71.12.7904-7909.2005	2005
Metabolism	Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis.	Aravind L, de Souza RF, Iyer LM.	Biol Direct	10.1186/1745-6150-5-48	2010
	A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems.	Zhang D, Iyer LM, Aravind L.	Nucleic Acids Res	10.1093/nar/gkr036	2011
Phylogeny	A new diketopiperazine isolated from a Nocardiopsis strain TRM20105 guided by bioassay against Candida albicans.	Chen H, Wan C, Zhang L	Nat Prod Res	10.1080/14786419.2018.1475389	2018
Enzymology	A new alpha-pyrone from the deep-sea actinomycete Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111(T).	Zou G, Liao XJ, Peng Q, Chen GD, Wei FY, Xu ZX, Zhao BX, Xu SH	J Asian Nat Prod Res	10.1080/10286020.2017.1307186	2017
Enzymology	Cloning, expression and characterization of a novel GH5 exo/endoglucanase of Thermobi fi da halotolerans YIM 90462(T) by genome mining.	Zhang F, Zhang XM, Yin YR, Li WJ	J Biosci Bioeng	10.1016/j.jbiosc.2015.04.012	2015
Enzymology	Cloning, expression, and characterization of an alkaline thermostable GH11 xylanase from Thermobifida halotolerans YIM 90462T.	Zhang F, Chen JJ, Ren WZ, Lin LB, Zhou Y, Zhi XY, Tang SK, Li WJ	J Ind Microbiol Biotechnol	10.1007/s10295-012-1119-8	2012
Genetics	Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).	Sun H, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Djao OD, Rohde M, Sikorski J, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP	Stand Genomic Sci	10.4056/sigs.1363462	2010
Phylogeny	[Isolation and comparative analysis of glycolipid fractions in bifidobacteria].	Novik GI, Astapovich NI, Grzegorzewicz A, Gamian A	Mikrobiologiia		2005
Genetics	A new structural type of teichoic acid and some chemotaxonomic criteria of two species Nocardiopsis dassonvillei and Nocardiopsis antarcticus.	Tul'skaya EM, Streshinskaya GM, Naumova IB, Shashkov AS, Terekhova LP	Arch Microbiol	10.1007/BF00292081	1993
Phylogeny	Reclassification of Streptomyces flavidofuscus as a synonym of Nocardiopsis dassonvillei subsp. dassonvillei.	Tamura T, Ishida Y, Otoguro M, Hatano K, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.65559-0	2008
Phylogeny	Isolation of toxigenic Nocardiopsis strains from indoor environments and description of two new Nocardiopsis Species, N. exhalans sp. nov. and N. umidischolae sp. nov.	Peltola JS, Andersson MA, Kampfer P, Auling G, Kroppenstedt RM, Busse HJ, Salkinoja-Salonen MS, Rainey FA.	Appl Environ Microbiol	10.1128/aem.67.9.4293-4304.2001	2001
Genetics	Nocardiopsis deserti sp. nov., isolated from a high altitude Atacama Desert soil.	Asem MD, Salam N, Idris H, Zhang XT, Bull AT, Li WJ, Goodfellow M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004158	2020
Phylogeny	Nocardiopsis tropica sp. nov., Nocardiopsis trehalosi sp. nov., nom. rev. and Nocardiopsis dassonvillei subsp. albirubida subsp. nov., comb. nov.	Evtushenko LI, Taran VV, Akimov VN, Kroppenstedt RM, Tiedje JM, Stackebrandt E.	Int J Syst Evol Microbiol	10.1099/00207713-50-1-73	2000
Phylogeny	Nocardiopsis dassonvillei subsp. crassaminis subsp. nov., isolated from freshwater sediment, and reappraisal of Nocardiopsis alborubida Grund and Kroppenstedt 1990 emend. Nouioui et al. 2018.	Camacho Pozo MI, Wieme AD, Perez SR, Llaurado Maury G, Snauwaert C, Lescaylle Veranes Y, Pena Zamora L, Schumann P, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijsem.0.004514	2020
Phylogeny	Nocardiopsis ansamitocini sp. nov., a new producer of ansamitocin P-3 of the genus Nocardiopsis.	Zhang YG, Liu Q, Wang HF, Park DJ, Guo JW, Kim CJ, Zhang YM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000703	2015
Phylogeny	Description of Nocardiopsis synnemataformans sp. nov., elevation of Nocardiopsis alba subsp. prasina to Nocardiopsis prasina comb. nov., and designation of Nocardiopsis antarctica and Nocardiopsis alborubida as later subjective synonyms of Nocardiopsis dassonvillei.	Yassin AF, Rainey FA, Burghardt J, Gierth D, Ungerechts J, Lux I, Seifert P, Bal C, Schaal KP	Int J Syst Bacteriol	10.1099/00207713-47-4-983	1997

References

#10774	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43111
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40678	; Curators of the CIP;
#43413	Iain Anderson, Birte Abt, Athanasios Lykidis, Hans-Peter Klenk, Nikos Kyrpides, Natalia Ivanova: Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria. PLoS ONE 7: 2012 ( DOI 10.1371/journal.pone.0039331 , PubMed 22723998 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#118857	Collection of Institut Pasteur ; Curators of the CIP; CIP 107115
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardiopsis dassonvillei subsp. dassonvillei (DSM 43111, ATCC 23218, IAM 14287)

Name and taxonomic classification

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Physiology and metabolism

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Genome browser: GCA_000092985

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